Merged generation history

- Immutable generation epochs now coexist with dimension stacks
- Historical terrain, biomes, structures, and locate behavior remain stable across updates
- Versioned generation kernels preserve the combined runtime contract

adapters/bukkit/nms/v26_2_R1/src/main/java/art/arcane/iris/core/nms/v26_2_R1/CustomBiomeSource.java

@@ -8,9 +8,11 @@ import art.arcane.iris.engine.DimensionStackContext;
 import art.arcane.iris.engine.DimensionStackLayout;
 import art.arcane.iris.engine.DimensionTerrainContext;
 import art.arcane.iris.engine.data.cache.AtomicCache;
+import art.arcane.iris.engine.IrisEngine;
 import art.arcane.iris.engine.framework.Engine;
 import art.arcane.iris.engine.framework.GenerationSessionException;
 import art.arcane.iris.engine.framework.GenerationSessionLease;
+import art.arcane.iris.engine.history.GenerationHistoryRuntimeRouter;
 import art.arcane.iris.engine.object.IrisBiome;
 import art.arcane.iris.engine.object.IrisBiomeCustom;
 import art.arcane.iris.engine.object.IrisDimension;
@@ -40,6 +42,7 @@ import org.bukkit.craftbukkit.CraftWorld;
 
 import java.lang.reflect.Field;
 import java.lang.reflect.Method;
+import java.io.IOException;
 import java.util.ArrayList;
 import java.util.Collections;
 import java.util.HashSet;
@@ -65,14 +68,11 @@ public class CustomBiomeSource extends BiomeSource {
     private final Registry<Biome> biomeRegistry;
     private final AtomicCache<RegistryAccess> registryAccess = new AtomicCache<>();
     private final Holder<Biome> fallbackBiome;
-    private final ConcurrentHashMap<Long, Holder<Biome>> noiseBiomeCache = new ConcurrentHashMap<>();
-    private final ConcurrentHashMap<Long, Holder<Biome>> structureBiomeCache = new ConcurrentHashMap<>();
-    private final ConcurrentHashMap<Long, Holder<Biome>> surfaceStructureBiomeCache = new ConcurrentHashMap<>();
-    private final ConcurrentHashMap<Long, Holder<Biome>> naturalSurfaceStructureBiomeCache = new ConcurrentHashMap<>();
-    private volatile KMap<String, Holder<Biome>> customBiomes;
-    private volatile Map<Biome, Holder<Biome>> vanillaSpawnBiomes;
-    private volatile IrisDimension cacheDimension;
-    private volatile int cacheRuntimeId;
+    private final ConcurrentHashMap<RuntimeNoiseKey, Holder<Biome>> noiseBiomeCache = new ConcurrentHashMap<>();
+    private final ConcurrentHashMap<RuntimeNoiseKey, Holder<Biome>> structureBiomeCache = new ConcurrentHashMap<>();
+    private final ConcurrentHashMap<RuntimeColumnKey, Holder<Biome>> surfaceStructureBiomeCache = new ConcurrentHashMap<>();
+    private final ConcurrentHashMap<RuntimeColumnKey, Holder<Biome>> naturalSurfaceStructureBiomeCache = new ConcurrentHashMap<>();
+    private final ConcurrentHashMap<Integer, RuntimeBiomeState> runtimeBiomeStates = new ConcurrentHashMap<>();
 
     public CustomBiomeSource(long seed, Engine engine, World world) {
         this.engine = engine;
@@ -80,10 +80,10 @@ public class CustomBiomeSource extends BiomeSource {
         this.biomeCustomRegistry = registry().lookup(Registries.BIOME).orElse(null);
         this.biomeRegistry = ((RegistryAccess) getFor(RegistryAccess.Frozen.class, ((CraftServer) Bukkit.getServer()).getHandle().getServer())).lookup(Registries.BIOME).orElse(null);
         this.fallbackBiome = resolveFallbackBiome(this.biomeRegistry, this.biomeCustomRegistry);
-        this.customBiomes = fillCustomBiomes(this.biomeCustomRegistry, engine, this.fallbackBiome);
-        this.vanillaSpawnBiomes = fillVanillaSpawnBiomes(this.biomeCustomRegistry, this.biomeRegistry, engine);
-        this.cacheDimension = engine.getDimension();
-        this.cacheRuntimeId = engine.getCacheID();
+        if (engine instanceof IrisEngine irisEngine) {
+            irisEngine.addGenerationRuntimeRetirementListener(this::evictRuntimeCaches);
+        }
+        runtimeBiomeState();
     }
 
     private static List<Holder<Biome>> getAllBiomes(
@@ -133,7 +133,7 @@ public class CustomBiomeSource extends BiomeSource {
             if (irisBiome.isCustom()) {
                 for (IrisBiomeCustom customBiome : irisBiome.getCustomDerivitives()) {
                     Holder<Biome> customHolder = resolveCustomBiomeHolder(
-                            customRegistry, ownedBiome.dimension(), customBiome.getId());
+                            customRegistry, engine, ownedBiome.dimension(), customBiome.getId());
                     if (customHolder == null) {
                         throw new IllegalStateException("Iris custom visible biome '"
                                 + customBiomeKey(ownedBiome.dimension(), customBiome.getId())
@@ -257,7 +257,7 @@ public class CustomBiomeSource extends BiomeSource {
             if (!isRuntimeAvailable()) {
                 throw new IllegalStateException("Iris possible biome lookup has no active engine runtime");
             }
-            ensureCachesCurrent();
+            runtimeBiomeState();
             World world = BukkitWorldBinding.world(engine.getWorld());
             if (world == null) {
                 throw new IllegalStateException("Iris biome source has no bound Bukkit world");
@@ -284,7 +284,7 @@ public class CustomBiomeSource extends BiomeSource {
                 for (IrisBiomeCustom j : i.getCustomDerivitives()) {
                     String key = customBiomeKey(ownedBiome.dimension(), j.getId());
                     Holder<Biome> holder = resolveCustomBiomeHolder(
-                            customRegistry, ownedBiome.dimension(), j.getId());
+                            customRegistry, engine, ownedBiome.dimension(), j.getId());
                     if (holder == null) {
                         if (fallback != null) {
                             m.put(key, fallback);
@@ -318,7 +318,7 @@ public class CustomBiomeSource extends BiomeSource {
             }
             for (IrisBiomeCustom customBiome : irisBiome.getCustomDerivitives()) {
                 Holder<Biome> customHolder = resolveCustomBiomeHolder(
-                        customRegistry, ownedBiome.dimension(), customBiome.getId());
+                        customRegistry, engine, ownedBiome.dimension(), customBiome.getId());
                 if (customHolder != null) {
                     spawnBiomes.putIfAbsent(customHolder.value(), vanillaHolder);
                 }
@@ -340,8 +340,7 @@ public class CustomBiomeSource extends BiomeSource {
             if (!isRuntimeAvailable()) {
                 return null;
             }
-            ensureCachesCurrent();
-            return vanillaSpawnBiomes.get(biome.value());
+            return runtimeBiomeState().vanillaSpawnBiomes().get(biome.value());
         }
     }
 
@@ -354,7 +353,7 @@ public class CustomBiomeSource extends BiomeSource {
             if (!isRuntimeAvailable()) {
                 return null;
             }
-            ensureCachesCurrent();
+            runtimeBiomeState();
             int quartX = QuartPos.fromBlock(blockX);
             int quartZ = QuartPos.fromBlock(blockZ);
             int sampleX = QuartPos.toBlock(quartX);
@@ -390,15 +389,17 @@ public class CustomBiomeSource extends BiomeSource {
 
     @Override
     public Holder<Biome> getNoiseBiome(int x, int y, int z, Climate.Sampler sampler) {
-        GenerationSessionLease lease = tryAcquireGenerationLease("bukkit_structure_biome");
-        if (lease == null) {
-            throw new IllegalStateException("Iris structure biome lookup was rejected during an engine transition");
-        }
-        try (lease; IrisContext.Scope ignored = IrisContext.open(engine, lease.sessionId(), null)) {
+        int blockX = x << 2;
+        int blockZ = z << 2;
+        try (GenerationHistoryRuntimeRouter.CoordinateScope historyScope =
+                     openHistoryCoordinateScope(blockX, blockZ, "bukkit_structure_biome");
+             GenerationSessionLease lease = requireGenerationLease(
+                     "bukkit_structure_biome",
+                     "Iris structure biome lookup was rejected during an engine transition");
+             IrisContext.Scope ignored = IrisContext.open(engine, lease.sessionId(), null)) {
             if (!isRuntimeAvailable()) {
                 throw new IllegalStateException("Iris structure biome lookup has no active engine runtime");
             }
-            ensureCachesCurrent();
             return getStructureNoiseBiomeWithActiveGenerationLease(x, y, z);
         }
     }
@@ -409,7 +410,8 @@ public class CustomBiomeSource extends BiomeSource {
         }
 
         boolean cacheable = isBiomeCacheable(x, z);
-        long cacheKey = packNoiseKey(x, y, z);
+        RuntimeNoiseKey cacheKey = new RuntimeNoiseKey(
+                engine.getCacheID(), packNoiseKey(x, y, z));
         if (cacheable) {
             Holder<Biome> cachedHolder = structureBiomeCache.get(cacheKey);
             if (cachedHolder != null) {
@@ -455,7 +457,6 @@ public class CustomBiomeSource extends BiomeSource {
             if (!isRuntimeAvailable()) {
                 throw new IllegalStateException("Iris structure ring biome lookup has no active engine runtime");
             }
-            ensureCachesCurrent();
             return findNaturalSurfaceBiomeHorizontal(
                     x, y, z, searchRadius, quartStep, allowed, random);
         }
@@ -533,7 +534,6 @@ public class CustomBiomeSource extends BiomeSource {
             if (!isRuntimeAvailable()) {
                 throw new IllegalStateException("Iris biome radius lookup has no active engine runtime");
             }
-            ensureCachesCurrent();
             int minQuartY = QuartPos.fromBlock(y - radius);
             boolean monumentQuery = radius == 29
                     && y == engine.getMinHeight() + engine.getDimension().getFluidHeight();
@@ -556,20 +556,27 @@ public class CustomBiomeSource extends BiomeSource {
     }
 
     private Holder<Biome> getSurfaceStructureBiomeHolder(int x, int z) {
-        long columnKey = packColumnKey(x, z);
-        Holder<Biome> surfaceHolder = surfaceStructureBiomeCache.get(columnKey);
-        if (surfaceHolder != null) {
-            return surfaceHolder;
+        int blockX = x << 2;
+        int blockZ = z << 2;
+        try (GenerationHistoryRuntimeRouter.CoordinateScope historyScope =
+                     openHistoryCoordinateScope(blockX, blockZ, "bukkit_surface_structure_biome")) {
+            RuntimeColumnKey columnKey = new RuntimeColumnKey(
+                    engine.getCacheID(), packColumnKey(x, z));
+            Holder<Biome> surfaceHolder = surfaceStructureBiomeCache.get(columnKey);
+            if (surfaceHolder != null) {
+                return surfaceHolder;
+            }
+            Holder<Biome> resolvedSurfaceHolder = resolveSurfaceStructureBiomeHolder(x, z);
+            Holder<Biome> existingSurfaceHolder = surfaceStructureBiomeCache.putIfAbsent(
+                    columnKey, resolvedSurfaceHolder);
+            if (existingSurfaceHolder != null) {
+                return existingSurfaceHolder;
+            }
+            if (surfaceStructureBiomeCache.size() > NOISE_BIOME_CACHE_MAX) {
+                surfaceStructureBiomeCache.clear();
+            }
+            return resolvedSurfaceHolder;
         }
-        Holder<Biome> resolvedSurfaceHolder = resolveSurfaceStructureBiomeHolder(x, z);
-        Holder<Biome> existingSurfaceHolder = surfaceStructureBiomeCache.putIfAbsent(columnKey, resolvedSurfaceHolder);
-        if (existingSurfaceHolder != null) {
-            return existingSurfaceHolder;
-        }
-        if (surfaceStructureBiomeCache.size() > NOISE_BIOME_CACHE_MAX) {
-            surfaceStructureBiomeCache.clear();
-        }
-        return resolvedSurfaceHolder;
     }
 
     private Pair<BlockPos, Holder<Biome>> findNaturalSurfaceBiomeHorizontal(
@@ -609,21 +616,27 @@ public class CustomBiomeSource extends BiomeSource {
     }
 
     private Holder<Biome> getNaturalSurfaceStructureBiomeHolder(int x, int z) {
-        long columnKey = packColumnKey(x, z);
-        Holder<Biome> cachedHolder = naturalSurfaceStructureBiomeCache.get(columnKey);
-        if (cachedHolder != null) {
-            return cachedHolder;
+        int blockX = x << 2;
+        int blockZ = z << 2;
+        try (GenerationHistoryRuntimeRouter.CoordinateScope historyScope =
+                     openHistoryCoordinateScope(blockX, blockZ, "bukkit_natural_structure_biome")) {
+            RuntimeColumnKey columnKey = new RuntimeColumnKey(
+                    engine.getCacheID(), packColumnKey(x, z));
+            Holder<Biome> cachedHolder = naturalSurfaceStructureBiomeCache.get(columnKey);
+            if (cachedHolder != null) {
+                return cachedHolder;
+            }
+            Holder<Biome> resolvedHolder = resolveNaturalSurfaceStructureBiomeHolder(x, z);
+            Holder<Biome> existingHolder = naturalSurfaceStructureBiomeCache.putIfAbsent(
+                    columnKey, resolvedHolder);
+            if (existingHolder != null) {
+                return existingHolder;
+            }
+            if (naturalSurfaceStructureBiomeCache.size() > NOISE_BIOME_CACHE_MAX) {
+                naturalSurfaceStructureBiomeCache.clear();
+            }
+            return resolvedHolder;
         }
-        Holder<Biome> resolvedHolder = resolveNaturalSurfaceStructureBiomeHolder(x, z);
-        Holder<Biome> existingHolder = naturalSurfaceStructureBiomeCache.putIfAbsent(
-                columnKey, resolvedHolder);
-        if (existingHolder != null) {
-            return existingHolder;
-        }
-        if (naturalSurfaceStructureBiomeCache.size() > NOISE_BIOME_CACHE_MAX) {
-            naturalSurfaceStructureBiomeCache.clear();
-        }
-        return resolvedHolder;
     }
 
     private boolean isGuaranteedSurfaceBiome(int quartY) {
@@ -671,11 +684,12 @@ public class CustomBiomeSource extends BiomeSource {
     }
 
     public Holder<Biome> getVisibleNoiseBiome(int x, int y, int z, Climate.Sampler sampler) {
-        GenerationSessionLease lease = tryAcquireGenerationLease("bukkit_visible_biome");
-        if (lease == null) {
-            throw new IllegalStateException("Iris visible biome lookup was rejected during an engine transition");
-        }
-        try (lease; IrisContext.Scope ignored = IrisContext.open(engine, lease.sessionId(), null)) {
+        try (GenerationHistoryRuntimeRouter.CoordinateScope historyScope = openHistoryCoordinateScope(
+                     x << 2, z << 2, "bukkit_visible_biome");
+             GenerationSessionLease lease = requireGenerationLease(
+                     "bukkit_visible_biome",
+                     "Iris visible biome lookup was rejected during an engine transition");
+             IrisContext.Scope ignored = IrisContext.open(engine, lease.sessionId(), null)) {
             prepareVisibleBiomeBatch();
             return getVisibleNoiseBiomeWithActiveGenerationLease(x, y, z, sampler);
         }
@@ -685,7 +699,7 @@ public class CustomBiomeSource extends BiomeSource {
         if (!isRuntimeAvailable()) {
             throw new IllegalStateException("Iris visible biome lookup has no active engine runtime");
         }
-        ensureCachesCurrent();
+        runtimeBiomeState();
     }
 
     Holder<Biome> getVisibleNoiseBiomeWithActiveGenerationLease(
@@ -717,7 +731,8 @@ public class CustomBiomeSource extends BiomeSource {
             IrisDimensionCarvingResolver.State resolverState,
             boolean cacheable
     ) {
-        long cacheKey = packNoiseKey(x, y, z);
+        RuntimeNoiseKey cacheKey = new RuntimeNoiseKey(
+                engine.getCacheID(), packNoiseKey(x, y, z));
         if (cacheable) {
             Holder<Biome> cachedHolder = noiseBiomeCache.get(cacheKey);
             if (cachedHolder != null) {
@@ -768,32 +783,71 @@ public class CustomBiomeSource extends BiomeSource {
         }
     }
 
+    private GenerationSessionLease requireGenerationLease(String operation, String rejectionMessage) {
+        GenerationSessionLease lease = tryAcquireGenerationLease(operation);
+        if (lease == null) {
+            throw new IllegalStateException(rejectionMessage);
+        }
+        return lease;
+    }
+
     private boolean isRuntimeAvailable() {
         return !engine.isClosed() && engine.getComplex() != null;
     }
 
-    private void ensureCachesCurrent() {
+    private GenerationHistoryRuntimeRouter.CoordinateScope openHistoryCoordinateScope(
+            int blockX,
+            int blockZ,
+            String operation
+    ) {
+        if (!(engine instanceof IrisEngine irisEngine)) {
+            return null;
+        }
+        try {
+            return irisEngine.openGenerationHistoryCoordinateScope(blockX, blockZ);
+        } catch (IOException failure) {
+            throw new IllegalStateException("Iris " + operation
+                    + " could not route generation history at "
+                    + blockX + "," + blockZ + ".", failure);
+        }
+    }
+
+    private void evictRuntimeCaches(int runtimeId) {
+        runtimeBiomeStates.remove(runtimeId);
+        noiseBiomeCache.keySet().removeIf(key -> key.runtimeId() == runtimeId);
+        structureBiomeCache.keySet().removeIf(key -> key.runtimeId() == runtimeId);
+        surfaceStructureBiomeCache.keySet().removeIf(key -> key.runtimeId() == runtimeId);
+        naturalSurfaceStructureBiomeCache.keySet().removeIf(key -> key.runtimeId() == runtimeId);
+    }
+
+    private RuntimeBiomeState runtimeBiomeState() {
         IrisDimension dimension = engine.getDimension();
         int runtimeId = engine.getCacheID();
-        if (cacheDimension == dimension && cacheRuntimeId == runtimeId) {
-            return;
+        RuntimeBiomeState existing = runtimeBiomeStates.get(runtimeId);
+        if (existing != null) {
+            if (existing.dimension() != dimension) {
+                throw new IllegalStateException("Iris biome runtime cache ID is shared by different dimensions.");
+            }
+            return existing;
         }
-        synchronized (this) {
-            if (cacheDimension == dimension && cacheRuntimeId == runtimeId) {
-                return;
+        synchronized (runtimeBiomeStates) {
+            existing = runtimeBiomeStates.get(runtimeId);
+            if (existing != null) {
+                if (existing.dimension() != dimension) {
+                    throw new IllegalStateException("Iris biome runtime cache ID is shared by different dimensions.");
+                }
+                return existing;
             }
             KMap<String, Holder<Biome>> refreshedCustomBiomes = fillCustomBiomes(
                     biomeCustomRegistry, engine, fallbackBiome);
             Map<Biome, Holder<Biome>> refreshedSpawnBiomes = fillVanillaSpawnBiomes(
                     biomeCustomRegistry, biomeRegistry, engine);
-            noiseBiomeCache.clear();
-            structureBiomeCache.clear();
-            surfaceStructureBiomeCache.clear();
-            naturalSurfaceStructureBiomeCache.clear();
-            customBiomes = refreshedCustomBiomes;
-            vanillaSpawnBiomes = refreshedSpawnBiomes;
-            cacheDimension = dimension;
-            cacheRuntimeId = runtimeId;
+            RuntimeBiomeState created = new RuntimeBiomeState(
+                    dimension,
+                    refreshedCustomBiomes,
+                    refreshedSpawnBiomes);
+            runtimeBiomeStates.put(runtimeId, created);
+            return created;
         }
     }
 
@@ -830,6 +884,14 @@ public class CustomBiomeSource extends BiomeSource {
             IrisDimensionCarvingResolver.State resolverState,
             DimensionStackLayout stackLayout
     ) {
+        int blockX = x << 2;
+        int blockY = y << 2;
+        int blockZ = z << 2;
+        Optional<String> historicalKey = engine.getComplex().historicalPhysicalBiomeKeyAt(
+                blockX, blockY, blockZ);
+        if (historicalKey.isPresent()) {
+            return resolvePhysicalBiomeHolder(historicalKey.get());
+        }
         BiomeResolution resolution = resolveBiomeResolution(
                 x, y, z, resolverState, true, stackLayout);
         if (resolution == null) {
@@ -858,7 +920,7 @@ public class CustomBiomeSource extends BiomeSource {
     private Holder<Biome> resolveCustomHolder(BiomeResolution resolution) {
         IrisBiomeCustom customBiome = resolution.irisBiome.getCustomBiome(resolution.rng, engine, resolution.blockX, resolution.blockY, resolution.blockZ);
         if (customBiome != null) {
-            Holder<Biome> holder = customBiomes.get(customBiomeKey(
+            Holder<Biome> holder = runtimeBiomeState().customBiomes().get(customBiomeKey(
                     resolution.dimension, customBiome.getId()));
             if (holder != null) {
                 return holder;
@@ -872,6 +934,18 @@ public class CustomBiomeSource extends BiomeSource {
         return resolveBiomeResolution(x, y, z, null, false);
     }
 
+    private Holder<Biome> resolvePhysicalBiomeHolder(String physicalKey) {
+        Holder<Biome> holder = resolveBiomeHolder(biomeCustomRegistry, physicalKey);
+        if (holder == null) {
+            holder = resolveBiomeHolder(biomeRegistry, physicalKey);
+        }
+        if (holder == null) {
+            throw new IllegalStateException("Historical Iris biome '" + physicalKey
+                    + "' is not registered in the active world registry.");
+        }
+        return holder;
+    }
+
     private BiomeResolution resolveBiomeResolution(
             int x,
             int y,
@@ -1008,17 +1082,19 @@ public class CustomBiomeSource extends BiomeSource {
 
     private static Holder<Biome> resolveCustomBiomeHolder(
             Registry<Biome> customRegistry,
+            Engine engine,
             IrisDimension dimension,
             String customBiomeId
     ) {
-        if (customRegistry == null || dimension == null
+        if (customRegistry == null || engine == null || dimension == null
                 || customBiomeId == null || customBiomeId.isBlank()) {
             return null;
         }
 
-        Identifier resourceLocation = Identifier.tryParse(customBiomeKey(dimension, customBiomeId));
+        String physicalKey = engine.getData().customBiomeResourceKey(dimension, customBiomeId);
+        Identifier resourceLocation = Identifier.tryParse(physicalKey);
         if (resourceLocation == null) {
-            return null;
+            throw new IllegalStateException("Invalid Iris custom biome resource key '" + physicalKey + "'.");
         }
         Biome biome = customRegistry.getValue(resourceLocation);
         if (biome == null) {
@@ -1170,4 +1246,17 @@ public class CustomBiomeSource extends BiomeSource {
 
     private record OwnedBiome(IrisDimension dimension, IrisBiome biome) {
     }
+
+    private record RuntimeNoiseKey(int runtimeId, long coordinateKey) {
+    }
+
+    private record RuntimeColumnKey(int runtimeId, long coordinateKey) {
+    }
+
+    private record RuntimeBiomeState(
+            IrisDimension dimension,
+            KMap<String, Holder<Biome>> customBiomes,
+            Map<Biome, Holder<Biome>> vanillaSpawnBiomes
+    ) {
+    }
 }

adapters/bukkit/nms/v26_2_R1/src/main/java/art/arcane/iris/core/nms/v26_2_R1/ImportedFeatureStage.java

@@ -62,9 +62,7 @@ final class ImportedFeatureStage {
     private static final String CYCLE_MARKER = "Feature order cycle found";
 
     private final Engine engine;
-    private volatile FeatureTable featureTable;
-    private volatile IrisDimension inertDimension;
-    private volatile int settledRuntimeId;
+    private final ConcurrentHashMap<Integer, RuntimeFeatureState> runtimeStates = new ConcurrentHashMap<>();
 
     ImportedFeatureStage(Engine engine) {
         this.engine = engine;
@@ -76,7 +74,8 @@ final class ImportedFeatureStage {
      * does today.
      */
     BiomeGenerationSettings generationSettings(Holder<Biome> biome) {
-        FeatureTable table = featureTable;
+        RuntimeFeatureState state = currentState();
+        FeatureTable table = state == null ? null : state.featureTable();
         if (table == null) {
             return null;
         }
@@ -87,50 +86,46 @@ final class ImportedFeatureStage {
     /**
      * Builds the table on the first decorated chunk, or leaves the stage inert. A feature-order cycle is
      * reported once here and degrades to features-off; it never reaches chunk generation as a crash.
-     *
-     * <p>The volatile fast path is unlocked, so a prepared stage costs two reads per chunk. The build is
-     * synchronized: every worldgen thread decorating a chunk calls this, and two threads that both found the
-     * stage unprepared would each run {@code FeatureSorter}, whose cycle detection is the expensive part.
      */
     void prepare(WorldGenLevel level) {
         IrisDimension dimension = engine.getDimension();
         int runtimeId = engine.getCacheID();
-        if (settled(dimension, runtimeId)) {
+        if (settled(runtimeStates.get(runtimeId), dimension)) {
             return;
         }
         synchronized (this) {
-            if (settled(dimension, runtimeId)) {
+            if (settled(runtimeStates.get(runtimeId), dimension)) {
                 return;
             }
-            build(level, dimension);
-            settledRuntimeId = runtimeId;
+            runtimeStates.put(runtimeId, build(level, dimension));
         }
     }
 
-    private boolean settled(IrisDimension dimension, int runtimeId) {
-        if (settledRuntimeId != runtimeId) {
-            return false;
-        }
-        FeatureTable current = featureTable;
-        if (current != null && current.dimension() == dimension) {
-            return true;
-        }
-        return inertDimension == dimension;
+    void evictRuntime(int runtimeId) {
+        runtimeStates.remove(runtimeId);
     }
 
-    private void build(WorldGenLevel level, IrisDimension dimension) {
+    private RuntimeFeatureState currentState() {
+        IrisDimension dimension = engine.getDimension();
+        RuntimeFeatureState state = runtimeStates.get(engine.getCacheID());
+        return settled(state, dimension) ? state : null;
+    }
+
+    private static boolean settled(RuntimeFeatureState state, IrisDimension dimension) {
+        return state != null && state.dimension() == dimension;
+    }
+
+    private RuntimeFeatureState build(WorldGenLevel level, IrisDimension dimension) {
         IrisImportedFeatureControl control;
         try {
             control = NativeFeatureGenerationPolicy.control(engine);
         } catch (RuntimeException error) {
             IrisLogging.error("Iris could not read importedFeatures for this dimension; features off: "
                     + error);
-            markInert(dimension);
-            return;
+            return new RuntimeFeatureState(dimension, null);
         }
         if (!control.shouldGenerateFeatures()) {
-            markInert(dimension);
-            return;
+            return new RuntimeFeatureState(dimension, null);
         }
         FeatureTable built;
         try {
@@ -138,23 +133,15 @@ final class ImportedFeatureStage {
         } catch (Throwable error) {
             IrisLogging.error("Iris importedFeatures is off for " + dimensionKey()
                     + ": feature table construction failed: " + error);
-            markInert(dimension);
-            return;
+            return new RuntimeFeatureState(dimension, null);
         }
         if (built == null) {
-            markInert(dimension);
-            return;
+            return new RuntimeFeatureState(dimension, null);
         }
-        featureTable = built;
-        inertDimension = null;
         IrisLogging.info("Iris importedFeatures on for " + dimensionKey() + ": " + built.biomes().size()
                 + " biomes, " + built.steps().size() + " steps, " + built.derivatives().size()
                 + " custom-biome derivative maps");
-    }
-
-    private void markInert(IrisDimension dimension) {
-        featureTable = null;
-        inertDimension = dimension;
+        return new RuntimeFeatureState(dimension, built);
     }
 
     private FeatureTable buildTable(WorldGenLevel level, IrisImportedFeatureControl control,
@@ -217,7 +204,7 @@ final class ImportedFeatureStage {
                 continue;
             }
             for (IrisBiomeCustom customBiome : irisBiome.getCustomDerivitives()) {
-                addKey(keys, engine.getDimension().getCustomBiomeKey(customBiome.getId()));
+                addKey(keys, engine.getData().customBiomeResourceKey(engine.getDimension(), customBiome));
             }
         }
         return keys;
@@ -249,7 +236,10 @@ final class ImportedFeatureStage {
                 continue;
             }
             for (IrisBiomeCustom customBiome : irisBiome.getCustomDerivitives()) {
-                derivatives.put(engine.getDimension().getCustomBiomeKey(customBiome.getId()), derivative);
+                derivatives.put(
+                        engine.getData().customBiomeResourceKey(engine.getDimension(), customBiome),
+                        derivative
+                );
             }
         }
         return derivatives;
@@ -280,7 +270,8 @@ final class ImportedFeatureStage {
      * control is disabled or the table degraded.
      */
     void run(WorldGenLevel level, ChunkAccess chunk, ChunkGenerator owner) {
-        FeatureTable table = featureTable;
+        RuntimeFeatureState state = currentState();
+        FeatureTable table = state == null ? null : state.featureTable();
         if (table == null) {
             return;
         }
@@ -467,4 +458,7 @@ final class ImportedFeatureStage {
                                 List<FeatureSorter.StepFeatureData> steps,
                                 Map<String, Holder<Biome>> derivatives, boolean filtered) {
     }
+
+    private record RuntimeFeatureState(IrisDimension dimension, FeatureTable featureTable) {
+    }
 }

adapters/bukkit/nms/v26_2_R1/src/main/java/art/arcane/iris/core/nms/v26_2_R1/IrisChunkGenerator.java

@@ -7,9 +7,11 @@ import art.arcane.iris.engine.framework.GenerationSessionException;
 import art.arcane.iris.engine.framework.GenerationSessionLease;
 import art.arcane.iris.engine.framework.IrisStructureLocator;
 import art.arcane.iris.engine.framework.NativeStructureOwnershipRecord;
+import art.arcane.iris.engine.framework.NativeStructureOwnershipStore;
 import art.arcane.iris.engine.framework.NativeStructureStartPlan;
 import art.arcane.iris.engine.framework.NativeStructureGenerationPolicy;
 import art.arcane.iris.engine.IrisEngine;
+import art.arcane.iris.engine.history.GenerationHistoryRuntimeRouter;
 import art.arcane.iris.engine.platform.BukkitChunkGenerator;
 import art.arcane.iris.engine.object.IrisDimension;
 import art.arcane.iris.engine.object.IrisDimensionCarvingResolver;
@@ -101,6 +103,7 @@ import java.lang.reflect.Field;
 import java.lang.reflect.Method;
 import java.lang.reflect.ParameterizedType;
 import java.lang.reflect.Type;
+import java.io.IOException;
 import java.util.ArrayList;
 import java.util.Arrays;
 import java.util.Comparator;
@@ -133,8 +136,6 @@ public class IrisChunkGenerator extends CustomChunkGenerator {
     private final int runtimeHeight;
     private final int runtimeSeaLevel;
     private final ConcurrentHashMap<SpawnTableKey, WeightedList<MobSpawnSettings.SpawnerData>> mergedSpawnTables = new ConcurrentHashMap<>();
-    private volatile IrisDimension spawnTableDimension;
-    private volatile int spawnTableRuntimeId;
     private final ImportedFeatureStage importedFeatures;
     private final AtomicReference<StudioStructureState> retainedStudioStructureState = new AtomicReference<>();
     private volatile ReachableStructureCache reachableStructureCache;
@@ -158,9 +159,25 @@ public class IrisChunkGenerator extends CustomChunkGenerator {
         this.runtimeMinY = level.getMinY();
         this.runtimeHeight = level.getHeight();
         this.runtimeSeaLevel = runtimeMinY + engine.getDimension().getFluidHeight();
+        if (engine instanceof IrisEngine irisEngine) {
+            irisEngine.addGenerationRuntimeRetirementListener(this::evictRuntimeCaches);
+        }
         installNativeStructureVolumeIndex(level);
     }
 
+    private void evictRuntimeCaches(int runtimeId) {
+        importedFeatures.evictRuntime(runtimeId);
+        mergedSpawnTables.keySet().removeIf(key -> key.runtimeId() == runtimeId);
+        ReachableStructureCache reachable = reachableStructureCache;
+        if (reachable != null && reachable.runtimeId() == runtimeId) {
+            reachableStructureCache = null;
+        }
+        StructureStepCache steps = structureStepCache;
+        if (steps != null && steps.runtimeId() == runtimeId) {
+            structureStepCache = null;
+        }
+    }
+
     private void installNativeStructureVolumeIndex(ServerLevel level) {
         WeakReference<ServerLevel> levelReference = new WeakReference<>(level);
         WeakReference<ChunkGenerator> generatorReference = new WeakReference<>(this);
@@ -186,7 +203,12 @@ public class IrisChunkGenerator extends CustomChunkGenerator {
         if (level != runtimeLevel || level.getChunkSource().getGenerator() != this) {
             return null;
         }
-        try (GenerationSessionLease lease = requireGenerationLease("bukkit_nms_structure_locate");
+        try (GenerationHistoryRuntimeRouter.RuntimeRoute route = openHistoryRoute(
+                     SectionPos.blockToSectionCoord(pos.getX()),
+                     SectionPos.blockToSectionCoord(pos.getZ()),
+                     "bukkit_nms_structure_locate");
+             GenerationHistoryRuntimeRouter.RuntimeRoute.RuntimeScope runtimeScope = openHistoryRuntimeScope(route);
+             GenerationSessionLease lease = requireGenerationLease("bukkit_nms_structure_locate");
              IrisContext.Scope ignored = IrisContext.open(engine, lease.sessionId(), null)) {
             HolderSet<Structure> reachable = filterReachableStructures(level, holders);
             NativeStructureVanillaLocator.Candidate nativeCandidate =
@@ -365,9 +387,16 @@ public class IrisChunkGenerator extends CustomChunkGenerator {
                 || runtimeLevel.getChunkSource().getGeneratorState() != structureState) {
             return;
         }
+        ChunkPos chunkPos = access.getPos();
         try (BukkitChunkGenerator.GenerationStagePermit stage = requireGenerationStage("bukkit_nms_create_structures");
+             GenerationHistoryRuntimeRouter.RuntimeRoute route = openHistoryRoute(
+                     chunkPos.x(), chunkPos.z(), "bukkit_nms_create_structures");
+             GenerationHistoryRuntimeRouter.RuntimeRoute.RuntimeScope runtimeScope = openHistoryRuntimeScope(route);
              GenerationSessionLease lease = requireGenerationLease("bukkit_nms_create_structures");
              IrisContext.Scope ignored = IrisContext.open(engine, lease.sessionId(), null)) {
+            if (!allowsRoutedDiscreteGeneration(access, ChunkStatus.STRUCTURE_STARTS)) {
+                return;
+            }
             Map<Structure, StructureStart> previousStarts = new HashMap<>(access.getAllStarts());
             super.createStructures(registryAccess, structureState, structureManager, access, templateManager, levelKey);
             Map<Structure, NativeStructureStartPlan> configuredStarts = NativeStructureStartInjector.inject(
@@ -399,15 +428,28 @@ public class IrisChunkGenerator extends CustomChunkGenerator {
             if (!start.isValid() || previousStarts.get(structure) == start) {
                 continue;
             }
-            if (configuredStarts.containsKey(structure)) {
-                continue;
-            }
             Identifier id = registry.getKey(structure);
             String structureId = id == null ? null : id.toString();
             if (structureId == null) {
                 throw NativeStructureGenerationException.failure(
                         "resolution", null, chunkPos.x(), chunkPos.z());
             }
+            BoundingBox footprint = start.getBoundingBox();
+            if (!engine.getComplex().allowsNewGenerationFootprint(
+                    footprint.minX(),
+                    footprint.minZ(),
+                    footprint.maxX(),
+                    footprint.maxZ())) {
+                access.setStartForStructure(structure, StructureStart.INVALID_START);
+                if (configuredStarts.containsKey(structure)) {
+                    NativeStructureOwnershipStore.discard(
+                            engine, structureId, chunkPos.x(), chunkPos.z());
+                }
+                continue;
+            }
+            if (configuredStarts.containsKey(structure)) {
+                continue;
+            }
             boolean undergroundStep = NativeStructureVegetationClearer.isUndergroundStep(structure.step());
             IrisNativeStructureDecision decision;
             try {
@@ -634,7 +676,11 @@ public class IrisChunkGenerator extends CustomChunkGenerator {
         if (runtimeLevel.getChunkSource().getGenerator() != this) {
             return;
         }
+        ChunkPos chunkPos = ichunkaccess.getPos();
         try (BukkitChunkGenerator.GenerationStagePermit stage = requireGenerationStage("bukkit_nms_create_references");
+             GenerationHistoryRuntimeRouter.RuntimeRoute route = openHistoryRoute(
+                     chunkPos.x(), chunkPos.z(), "bukkit_nms_create_references");
+             GenerationHistoryRuntimeRouter.RuntimeRoute.RuntimeScope runtimeScope = openHistoryRuntimeScope(route);
              GenerationSessionLease lease = requireGenerationLease("bukkit_nms_create_references");
              IrisContext.Scope ignored = IrisContext.open(engine, lease.sessionId(), null)) {
             NativeStructureReferenceRepair.createReferences(
@@ -644,7 +690,11 @@ public class IrisChunkGenerator extends CustomChunkGenerator {
 
     @Override
     public CompletableFuture<ChunkAccess> createBiomes(RandomState randomstate, Blender blender, StructureManager structuremanager, ChunkAccess ichunkaccess) {
+        ChunkPos chunkPos = ichunkaccess.getPos();
         try (BukkitChunkGenerator.GenerationStagePermit stage = requireGenerationStage("bukkit_nms_create_biomes");
+             GenerationHistoryRuntimeRouter.RuntimeRoute route = openHistoryRoute(
+                     chunkPos.x(), chunkPos.z(), "bukkit_nms_create_biomes");
+             GenerationHistoryRuntimeRouter.RuntimeRoute.RuntimeScope runtimeScope = openHistoryRuntimeScope(route);
              GenerationSessionLease lease = requireGenerationLease("bukkit_nms_create_biomes");
              IrisContext.Scope ignored = IrisContext.open(engine, lease.sessionId(), null)) {
             customBiomeSource.prepareVisibleBiomeBatch();
@@ -659,31 +709,63 @@ public class IrisChunkGenerator extends CustomChunkGenerator {
 
     @Override
     public void buildSurface(WorldGenRegion regionlimitedworldaccess, StructureManager structuremanager, RandomState randomstate, ChunkAccess ichunkaccess) {
-        delegate.buildSurface(regionlimitedworldaccess, structuremanager, randomstate, ichunkaccess);
+        ChunkPos chunkPos = ichunkaccess.getPos();
+        try (BukkitChunkGenerator.GenerationStagePermit stage = requireGenerationStage("bukkit_nms_build_surface");
+             GenerationHistoryRuntimeRouter.RuntimeRoute route = openHistoryRoute(
+                     chunkPos.x(), chunkPos.z(), "bukkit_nms_build_surface");
+             GenerationHistoryRuntimeRouter.RuntimeRoute.RuntimeScope runtimeScope = openHistoryRuntimeScope(route);
+             GenerationSessionLease lease = requireGenerationLease("bukkit_nms_build_surface");
+             IrisContext.Scope ignored = IrisContext.open(engine, lease.sessionId(), null)) {
+            delegate.buildSurface(regionlimitedworldaccess, structuremanager, randomstate, ichunkaccess);
+        }
     }
 
     @Override
     public void applyCarvers(WorldGenRegion regionlimitedworldaccess, long seed, RandomState randomstate, BiomeManager biomemanager, StructureManager structuremanager, ChunkAccess ichunkaccess) {
-        delegate.applyCarvers(regionlimitedworldaccess, seed, randomstate, biomemanager, structuremanager, ichunkaccess);
+        ChunkPos chunkPos = ichunkaccess.getPos();
+        try (BukkitChunkGenerator.GenerationStagePermit stage = requireGenerationStage("bukkit_nms_apply_carvers");
+             GenerationHistoryRuntimeRouter.RuntimeRoute route = openHistoryRoute(
+                     chunkPos.x(), chunkPos.z(), "bukkit_nms_apply_carvers");
+             GenerationHistoryRuntimeRouter.RuntimeRoute.RuntimeScope runtimeScope = openHistoryRuntimeScope(route);
+             GenerationSessionLease lease = requireGenerationLease("bukkit_nms_apply_carvers");
+             IrisContext.Scope ignored = IrisContext.open(engine, lease.sessionId(), null)) {
+            delegate.applyCarvers(regionlimitedworldaccess, seed, randomstate, biomemanager, structuremanager, ichunkaccess);
+        }
     }
 
     @Override
     public CompletableFuture<ChunkAccess> fillFromNoise(Blender blender, RandomState randomstate, StructureManager structuremanager, ChunkAccess ichunkaccess) {
+        ChunkPos chunkPos = ichunkaccess.getPos();
         BukkitChunkGenerator.GenerationStagePermit stage = requireNoiseGenerationStage(
-                ichunkaccess.getPos(),
+                chunkPos,
                 "bukkit_nms_chunk_pipeline");
-        GenerationSessionLease lease;
+        GenerationHistoryRuntimeRouter.RuntimeRoute route;
         try {
-            lease = requireGenerationLease("bukkit_nms_chunk_pipeline");
+            route = openHistoryRoute(chunkPos.x(), chunkPos.z(), "bukkit_nms_chunk_pipeline");
         } catch (RuntimeException | Error failure) {
             stage.close();
             throw failure;
         }
+        GenerationSessionLease lease;
         try {
-            CompletableFuture<ChunkAccess> pipeline = delegate
-                    .fillFromNoise(blender, randomstate, structuremanager, ichunkaccess)
+            lease = requireGenerationLease("bukkit_nms_chunk_pipeline");
+        } catch (RuntimeException | Error failure) {
+            closeHistoryRoute(route, failure);
+            stage.close();
+            throw failure;
+        }
+        try {
+            CompletableFuture<ChunkAccess> delegatePipeline;
+            try (GenerationHistoryRuntimeRouter.RuntimeRoute.RuntimeScope runtimeScope = openHistoryRuntimeScope(route);
+                 IrisContext.Scope ignored = IrisContext.open(engine, lease.sessionId(), null)) {
+                delegatePipeline = delegate.fillFromNoise(
+                        blender, randomstate, structuremanager, ichunkaccess);
+            }
+            CompletableFuture<ChunkAccess> pipeline = delegatePipeline
                     .thenApply(filled -> {
-                        try (IrisContext.Scope ignored = IrisContext.open(engine, lease.sessionId(), null)) {
+                        try (GenerationHistoryRuntimeRouter.RuntimeRoute.RuntimeScope runtimeScope =
+                                     openHistoryRuntimeScope(route);
+                             IrisContext.Scope ignored = IrisContext.open(engine, lease.sessionId(), null)) {
                             primeWorldgenHeightmaps(filled);
                             return filled;
                         }
@@ -691,24 +773,78 @@ public class IrisChunkGenerator extends CustomChunkGenerator {
             CompletableFuture<ChunkAccess> completion = new CompletableFuture<>();
             pipeline.whenComplete((filled, failure) -> {
                 boolean cancelled = isCancellationFailure(failure);
-                lease.close();
-                stage.close();
-                if (failure == null) {
+                Throwable completionFailure = closeNoisePipelineResources(
+                        failure, lease, route, stage);
+                if (completionFailure == null) {
                     completion.complete(filled);
                 } else if (cancelled) {
                     completion.cancel(false);
                 } else {
-                    completion.completeExceptionally(failure);
+                    completion.completeExceptionally(completionFailure);
                 }
             });
             return completion;
         } catch (RuntimeException | Error failure) {
             lease.close();
+            closeHistoryRoute(route, failure);
             stage.close();
             throw failure;
         }
     }
 
+    private static Throwable closeNoisePipelineResources(
+            Throwable failure,
+            GenerationSessionLease lease,
+            GenerationHistoryRuntimeRouter.RuntimeRoute route,
+            BukkitChunkGenerator.GenerationStagePermit stage
+    ) {
+        Throwable result = failure;
+        try {
+            lease.close();
+        } catch (Throwable closeFailure) {
+            result = appendFailure(result, closeFailure);
+        }
+        try {
+            if (route != null) {
+                route.close();
+            }
+        } catch (Throwable closeFailure) {
+            result = appendFailure(result, closeFailure);
+        }
+        try {
+            stage.close();
+        } catch (Throwable closeFailure) {
+            result = appendFailure(result, closeFailure);
+        }
+        return result;
+    }
+
+    private static void closeHistoryRoute(
+            GenerationHistoryRuntimeRouter.RuntimeRoute route,
+            Throwable failure
+    ) {
+        if (route == null) {
+            return;
+        }
+        try {
+            route.close();
+        } catch (Throwable closeFailure) {
+            if (failure != closeFailure) {
+                failure.addSuppressed(closeFailure);
+            }
+        }
+    }
+
+    private static Throwable appendFailure(Throwable failure, Throwable closeFailure) {
+        if (failure == null) {
+            return closeFailure;
+        }
+        if (failure != closeFailure) {
+            failure.addSuppressed(closeFailure);
+        }
+        return failure;
+    }
+
     private static boolean isCancellationFailure(Throwable failure) {
         Throwable current = failure;
         while (current instanceof CompletionException && current.getCause() != null) {
@@ -739,6 +875,20 @@ public class IrisChunkGenerator extends CustomChunkGenerator {
 
     @Override
     public WeightedList<MobSpawnSettings.SpawnerData> getMobsAt(Holder<Biome> holder, StructureManager structuremanager, MobCategory enumcreaturetype, BlockPos blockposition) {
+        try (GenerationHistoryRuntimeRouter.CoordinateScope route = openHistoryCoordinateScope(
+                     blockposition.getX(), blockposition.getZ(), "bukkit_nms_mob_spawns");
+             GenerationSessionLease lease = requireGenerationLease("bukkit_nms_mob_spawns");
+             IrisContext.Scope ignored = IrisContext.open(engine, lease.sessionId(), null)) {
+            return getMobsAtWithActiveRuntime(holder, structuremanager, enumcreaturetype, blockposition);
+        }
+    }
+
+    private WeightedList<MobSpawnSettings.SpawnerData> getMobsAtWithActiveRuntime(
+            Holder<Biome> holder,
+            StructureManager structuremanager,
+            MobCategory enumcreaturetype,
+            BlockPos blockposition
+    ) {
         Holder<Biome> vanillaSpawnBiome = customBiomeSource.getVanillaSpawnBiome(holder);
         if (vanillaSpawnBiome == null) {
             return delegate.getMobsAt(holder, structuremanager, enumcreaturetype, blockposition);
@@ -759,18 +909,8 @@ public class IrisChunkGenerator extends CustomChunkGenerator {
             return explicitSpawns;
         }
 
-        IrisDimension spawnDimension = engine.getDimension();
         int spawnRuntimeId = engine.getCacheID();
-        if (spawnTableDimension != spawnDimension || spawnTableRuntimeId != spawnRuntimeId) {
-            synchronized (mergedSpawnTables) {
-                if (spawnTableDimension != spawnDimension || spawnTableRuntimeId != spawnRuntimeId) {
-                    mergedSpawnTables.clear();
-                    spawnTableDimension = spawnDimension;
-                    spawnTableRuntimeId = spawnRuntimeId;
-                }
-            }
-        }
-        SpawnTableKey key = new SpawnTableKey(holder.value(), enumcreaturetype);
+        SpawnTableKey key = new SpawnTableKey(spawnRuntimeId, holder.value(), enumcreaturetype);
         return mergedSpawnTables.computeIfAbsent(key, ignored -> mergeSpawnTables(vanillaSpawns, explicitSpawns));
     }
 
@@ -786,19 +926,26 @@ public class IrisChunkGenerator extends CustomChunkGenerator {
 
     @Override
     public void applyBiomeDecoration(WorldGenLevel generatoraccessseed, ChunkAccess ichunkaccess, StructureManager structuremanager, boolean vanilla) {
+        ChunkPos chunkPos = ichunkaccess.getPos();
         try (BukkitChunkGenerator.GenerationStagePermit stage = requireGenerationStage("bukkit_nms_biome_decoration");
+             GenerationHistoryRuntimeRouter.RuntimeRoute route = openHistoryRoute(
+                     chunkPos.x(), chunkPos.z(), "bukkit_nms_biome_decoration");
+             GenerationHistoryRuntimeRouter.RuntimeRoute.RuntimeScope runtimeScope = openHistoryRuntimeScope(route);
              GenerationSessionLease lease = requireGenerationLease("bukkit_nms_biome_decoration");
-             IrisContext.Scope ignored = IrisContext.open(engine, lease.sessionId(), null)) {
-            // Bind-time equivalent for Bukkit: the table is built on the first decorated chunk, which is where a
-            // feature-order cycle is reported once and degraded to features-off.
-            importedFeatures.prepare(generatoraccessseed);
-            addVanillaDecorations(generatoraccessseed, ichunkaccess, structuremanager);
-            placeVanillaStructures(generatoraccessseed, ichunkaccess, structuremanager);
-            // Vanilla's placed-feature pass, on THIS thread. The delegate is still called with
-            // addVanillaDecorations=false below, so the vanilla half never runs twice. Inert unless the
-            // dimension set importedFeatures.enabled.
-            importedFeatures.run(generatoraccessseed, ichunkaccess, this);
-            delegate.applyBiomeDecoration(generatoraccessseed, ichunkaccess, structuremanager, false);
+            IrisContext.Scope ignored = IrisContext.open(engine, lease.sessionId(), null)) {
+            if (allowsRoutedDiscreteGeneration(ichunkaccess, ChunkStatus.FEATURES)) {
+                // Bind-time equivalent for Bukkit: the table is built on the first decorated chunk, which is where a
+                // feature-order cycle is reported once and degraded to features-off.
+                importedFeatures.prepare(generatoraccessseed);
+                addVanillaDecorations(generatoraccessseed, ichunkaccess, structuremanager);
+                placeVanillaStructures(generatoraccessseed, ichunkaccess, structuremanager);
+                // Vanilla's placed-feature pass, on THIS thread. The delegate is still called with
+                // addVanillaDecorations=false below, so the vanilla half never runs twice. Inert unless the
+                // dimension set importedFeatures.enabled.
+                importedFeatures.run(generatoraccessseed, ichunkaccess, this);
+                delegate.applyBiomeDecoration(generatoraccessseed, ichunkaccess, structuremanager, false);
+            }
+            claimGeneratedSemantics(route, "bukkit_nms_biome_decoration");
         }
     }
 
@@ -850,6 +997,14 @@ public class IrisChunkGenerator extends CustomChunkGenerator {
                     List<StructureStart> starts = structureManager.startsForStructure(sectionPos, structure);
                     List<NativePlacement> resolvedPlacements = new ArrayList<>(starts.size());
                     for (StructureStart start : starts) {
+                        BoundingBox footprint = start.getBoundingBox();
+                        if (!engine.getComplex().allowsNewGenerationFootprint(
+                                footprint.minX(),
+                                footprint.minZ(),
+                                footprint.maxX(),
+                                footprint.maxZ())) {
+                            continue;
+                        }
                         NativeStructureOwnershipRecord ownership =
                                 NativeStructureOwnershipRecovery.resolve(
                                         engine, world.getLevel(), structureId, structure, start);
@@ -1001,13 +1156,14 @@ public class IrisChunkGenerator extends CustomChunkGenerator {
     }
 
     private List<List<Structure>> structuresByStep(Registry<Structure> registry) {
+        int runtimeId = engine.getCacheID();
         StructureStepCache cached = structureStepCache;
-        if (cached != null && cached.registry() == registry) {
+        if (cached != null && cached.runtimeId() == runtimeId && cached.registry() == registry) {
             return cached.structures();
         }
         synchronized (this) {
             cached = structureStepCache;
-            if (cached != null && cached.registry() == registry) {
+            if (cached != null && cached.runtimeId() == runtimeId && cached.registry() == registry) {
                 return cached.structures();
             }
             int steps = GenerationStep.Decoration.values().length;
@@ -1022,7 +1178,7 @@ public class IrisChunkGenerator extends CustomChunkGenerator {
                 grouped.set(step, List.copyOf(grouped.get(step)));
             }
             List<List<Structure>> resolved = List.copyOf(grouped);
-            structureStepCache = new StructureStepCache(registry, resolved);
+            structureStepCache = new StructureStepCache(runtimeId, registry, resolved);
             return resolved;
         }
     }
@@ -1054,7 +1210,10 @@ public class IrisChunkGenerator extends CustomChunkGenerator {
 
     @Override
     public void addVanillaDecorations(WorldGenLevel level, ChunkAccess chunkAccess, StructureManager structureManager) {
-        try (GenerationSessionLease lease = engine.acquireGenerationLease("bukkit_nms_heightmaps");
+        ChunkPos chunkPos = chunkAccess.getPos();
+        try (GenerationHistoryRuntimeRouter.CoordinateScope historyScope = openHistoryCoordinateScope(
+                     chunkPos.getMinBlockX(), chunkPos.getMinBlockZ(), "bukkit_nms_heightmaps");
+             GenerationSessionLease lease = engine.acquireGenerationLease("bukkit_nms_heightmaps");
              IrisContext.Scope ignored = IrisContext.open(engine, lease.sessionId(), null)) {
             SectionPos sectionPos = SectionPos.of(chunkAccess.getPos(), level.getMinSectionY());
             BlockPos blockPos = sectionPos.origin();
@@ -1085,22 +1244,40 @@ public class IrisChunkGenerator extends CustomChunkGenerator {
     @Override
     public void spawnOriginalMobs(WorldGenRegion region) {
         ChunkPos center = region.getCenter();
-        Holder<Biome> visibleBiome;
-        if (engine.getDimensionStackContext() == null) {
-            visibleBiome = region.getBiome(center.getWorldPosition().atY(region.getMaxY()));
-        } else {
-            visibleBiome = customBiomeSource.getVisibleSurfaceBiome(
-                    center.getMinBlockX() + 8,
-                    center.getMinBlockZ() + 8);
-            if (visibleBiome == null) {
-                visibleBiome = region.getBiome(center.getWorldPosition().atY(region.getMaxY()));
+        try (BukkitChunkGenerator.GenerationStagePermit stage = requireGenerationStage("bukkit_nms_spawn_original_mobs");
+             GenerationHistoryRuntimeRouter.RuntimeRoute route = openHistoryRoute(
+                     center.x(), center.z(), "bukkit_nms_spawn_original_mobs");
+             GenerationHistoryRuntimeRouter.RuntimeRoute.RuntimeScope runtimeScope = openHistoryRuntimeScope(route);
+             GenerationSessionLease lease = requireGenerationLease("bukkit_nms_spawn_original_mobs");
+             IrisContext.Scope ignored = IrisContext.open(engine, lease.sessionId(), null)) {
+            if (!allowsRoutedDiscreteGeneration(region.getChunk(center.x(), center.z()), ChunkStatus.SPAWN)) {
+                return;
             }
+            Holder<Biome> visibleBiome;
+            if (engine.getDimensionStackContext() == null) {
+                visibleBiome = region.getBiome(center.getWorldPosition().atY(region.getMaxY()));
+            } else {
+                visibleBiome = customBiomeSource.getVisibleSurfaceBiome(
+                        center.getMinBlockX() + 8,
+                        center.getMinBlockZ() + 8);
+                if (visibleBiome == null) {
+                    visibleBiome = region.getBiome(center.getWorldPosition().atY(region.getMaxY()));
+                }
+            }
+            Holder<Biome> vanillaBiome = customBiomeSource.getVanillaSpawnBiome(visibleBiome);
+            WorldgenRandom random = new WorldgenRandom(new LegacyRandomSource(RandomSupport.generateUniqueSeed()));
+            random.setDecorationSeed(region.getSeed(), center.getMinBlockX(), center.getMinBlockZ());
+            NaturalSpawner.spawnMobsForChunkGeneration(
+                    region, vanillaBiome == null ? visibleBiome : vanillaBiome, center, random);
         }
-        Holder<Biome> vanillaBiome = customBiomeSource.getVanillaSpawnBiome(visibleBiome);
-        WorldgenRandom random = new WorldgenRandom(new LegacyRandomSource(RandomSupport.generateUniqueSeed()));
-        random.setDecorationSeed(region.getSeed(), center.getMinBlockX(), center.getMinBlockZ());
-        NaturalSpawner.spawnMobsForChunkGeneration(
-                region, vanillaBiome == null ? visibleBiome : vanillaBiome, center, random);
+    }
+
+    private boolean allowsRoutedDiscreteGeneration(ChunkAccess chunk, ChunkStatus stage) {
+        if (chunk.getPersistedStatus().isOrAfter(stage)) {
+            return false;
+        }
+        ChunkPos chunkPos = chunk.getPos();
+        return engine.getComplex().allowsNewGenerationChunk(chunkPos.x(), chunkPos.z());
     }
 
     private static WeightedList<MobSpawnSettings.SpawnerData> mergeSpawnTables(
@@ -1133,7 +1310,9 @@ public class IrisChunkGenerator extends CustomChunkGenerator {
 
     @Override
     public int getBaseHeight(int i, int j, Heightmap.Types heightmap_type, LevelHeightAccessor levelheightaccessor, RandomState randomstate) {
-        try (GenerationSessionLease lease = engine.acquireGenerationLease("bukkit_nms_base_height");
+        try (GenerationHistoryRuntimeRouter.CoordinateScope route = openHistoryCoordinateScope(
+                     i, j, "bukkit_nms_base_height");
+             GenerationSessionLease lease = engine.acquireGenerationLease("bukkit_nms_base_height");
              IrisContext.Scope ignored = IrisContext.open(engine, lease.sessionId(), null)) {
             boolean ignoreFluid = !heightmap_type.isOpaque().test(Blocks.WATER.defaultBlockState());
             int height = engine.getDimensionStackContext() == null
@@ -1148,7 +1327,9 @@ public class IrisChunkGenerator extends CustomChunkGenerator {
 
     @Override
     public NoiseColumn getBaseColumn(int i, int j, LevelHeightAccessor levelheightaccessor, RandomState randomstate) {
-        try (GenerationSessionLease lease = engine.acquireGenerationLease("bukkit_nms_base_column");
+        try (GenerationHistoryRuntimeRouter.CoordinateScope route = openHistoryCoordinateScope(
+                     i, j, "bukkit_nms_base_column");
+             GenerationSessionLease lease = engine.acquireGenerationLease("bukkit_nms_base_column");
              IrisContext.Scope ignored = IrisContext.open(engine, lease.sessionId(), null)) {
             boolean dimensionStack = engine.getDimensionStackContext() != null;
             int block = dimensionStack
@@ -1181,6 +1362,69 @@ public class IrisChunkGenerator extends CustomChunkGenerator {
         }
     }
 
+    private GenerationHistoryRuntimeRouter.RuntimeRoute openHistoryRoute(
+            int chunkX,
+            int chunkZ,
+            String operation
+    ) {
+        if (!(engine instanceof IrisEngine irisEngine)) {
+            return null;
+        }
+        GenerationHistoryRuntimeRouter router = irisEngine.getGenerationHistoryRuntimeRouter().orElse(null);
+        if (router == null) {
+            if (platformGenerator != null && platformGenerator.getGenerationHistory() != null) {
+                throw new IllegalStateException("Iris " + operation
+                        + " has no generation-history runtime router.");
+            }
+            return null;
+        }
+        try {
+            return router.openRoute(chunkX, chunkZ);
+        } catch (IOException failure) {
+            throw new IllegalStateException("Iris " + operation
+                    + " could not route generation history for chunk "
+                    + chunkX + "," + chunkZ + ".", failure);
+        }
+    }
+
+    private GenerationHistoryRuntimeRouter.CoordinateScope openHistoryCoordinateScope(
+            int blockX,
+            int blockZ,
+            String operation
+    ) {
+        if (!(engine instanceof IrisEngine irisEngine)) {
+            return null;
+        }
+        try {
+            return irisEngine.openGenerationHistoryCoordinateScope(blockX, blockZ);
+        } catch (IOException failure) {
+            throw new IllegalStateException("Iris " + operation
+                    + " could not route generation history at "
+                    + blockX + "," + blockZ + ".", failure);
+        }
+    }
+
+    private static GenerationHistoryRuntimeRouter.RuntimeRoute.RuntimeScope openHistoryRuntimeScope(
+            GenerationHistoryRuntimeRouter.RuntimeRoute route
+    ) {
+        return route == null ? null : route.openRuntimeScope();
+    }
+
+    private static void claimGeneratedSemantics(
+            GenerationHistoryRuntimeRouter.RuntimeRoute route,
+            String operation
+    ) {
+        if (route == null) {
+            return;
+        }
+        try {
+            route.claimGeneratedSemantics();
+        } catch (IOException failure) {
+            throw new IllegalStateException("Iris " + operation
+                    + " could not durably claim generated chunk semantics.", failure);
+        }
+    }
+
     private BukkitChunkGenerator.GenerationStagePermit requireGenerationStage(String operation) {
         return platformGenerator == null
                 ? BukkitChunkGenerator.GenerationStagePermit.noop()
@@ -1252,13 +1496,14 @@ public class IrisChunkGenerator extends CustomChunkGenerator {
         }
     }
 
-    private record SpawnTableKey(Biome biome, MobCategory category) {
+    private record SpawnTableKey(int runtimeId, Biome biome, MobCategory category) {
     }
 
     private record ReachableStructureCache(IrisDimension dimension, int runtimeId, Set<String> keys) {
     }
 
-    private record StructureStepCache(Registry<Structure> registry, List<List<Structure>> structures) {
+    private record StructureStepCache(int runtimeId, Registry<Structure> registry,
+                                      List<List<Structure>> structures) {
     }
 
     record StudioStructureState(

adapters/bukkit/nms/v26_2_R1/src/main/java/art/arcane/iris/core/nms/v26_2_R1/NMSBinding.java

@@ -33,6 +33,7 @@ import art.arcane.iris.util.common.format.C;
 import art.arcane.iris.util.project.hunk.Hunk;
 import art.arcane.iris.util.project.hunk.view.ChunkDataHunkHolder;
 import art.arcane.iris.spi.PlatformBlockState;
+import art.arcane.iris.spi.PlatformGenerationRegistry;
 import art.arcane.iris.util.common.data.IrisCustomData;
 import art.arcane.volmlib.util.json.JSONObject;
 import art.arcane.volmlib.util.mantle.runtime.Mantle;
@@ -57,6 +58,9 @@ import it.unimi.dsi.fastutil.shorts.ShortList;
 import net.bytebuddy.ByteBuddy;
 import net.bytebuddy.agent.builder.AgentBuilder;
 import net.bytebuddy.agent.builder.ResettableClassFileTransformer;
+import net.bytebuddy.description.type.TypeDescription;
+import net.bytebuddy.dynamic.DynamicType;
+import net.bytebuddy.utility.JavaModule;
 import net.bytebuddy.asm.Advice;
 import net.bytebuddy.matcher.ElementMatchers;
 import net.minecraft.core.BlockPos;
@@ -169,7 +173,6 @@ import java.util.List;
 import java.util.Set;
 import java.util.concurrent.CompletableFuture;
 import java.util.concurrent.Executor;
-import java.util.concurrent.TimeUnit;
 import java.util.concurrent.atomic.AtomicBoolean;
 import java.util.concurrent.atomic.AtomicInteger;
 
@@ -181,11 +184,22 @@ public class NMSBinding implements INMSBinding {
     private final AtomicBoolean injected = new AtomicBoolean();
     private volatile ResettableClassFileTransformer levelStorageAccessTransformer;
     private volatile ResettableClassFileTransformer serverLevelTransformer;
+    private volatile ResettableClassFileTransformer pluginClassLoaderTransformer;
+    private boolean pluginClassLoaderCloseDeferred;
     private final AtomicCache<MCAIdMapper<BlockState>> registryCache = new AtomicCache<>();
     private final AtomicCache<MCAPalette<BlockState>> globalCache = new AtomicCache<>();
     private final AtomicCache<RegistryAccess> registryAccess = new AtomicCache<>();
     private final AtomicCache<Method> byIdRef = new AtomicCache<>();
 
+    @Override
+    public PlatformGenerationRegistry generationRegistry() {
+        return new NmsGenerationRegistry(
+                this::registry,
+                "bukkit-generation-registry-v1",
+                "bukkit-v26_2_R1-generated-registry-json-v1"
+        );
+    }
+
     private static Object getFor(Class<?> type, Object source) {
         Object o = fieldFor(type, source);
 
@@ -1544,6 +1558,23 @@ public class NMSBinding implements INMSBinding {
             }
             try {
                 IrisLogging.info("Injecting Bukkit");
+                Agent.requireClassLoaderCloseDeferral();
+                Class<?> loaderCloseType = getClass().getClassLoader().getClass()
+                        .getMethod("close").getDeclaringClass();
+                PluginClassLoaderInjectionListener loaderListener = new PluginClassLoaderInjectionListener();
+                pluginClassLoaderTransformer = new AgentBuilder.Default()
+                        .disableClassFormatChanges()
+                        .with(AgentBuilder.RedefinitionStrategy.RETRANSFORMATION)
+                        .with(AgentBuilder.RedefinitionStrategy.Listener.ErrorEscalating.FAIL_FAST)
+                        .with(loaderListener)
+                        .type(ElementMatchers.is(loaderCloseType))
+                        .transform((builder, typeDescription, classLoader, module, protectionDomain) ->
+                                builder.visit(Advice.to(PluginClassLoaderCloseAdvice.class)
+                                        .on(ElementMatchers.named("close")
+                                                .and(ElementMatchers.takesArguments(0))
+                                                .and(ElementMatchers.returns(void.class)))))
+                        .installOn(Agent.getInstrumentation());
+                loaderListener.requireInstalled();
                 levelStorageAccessTransformer = new AgentBuilder.Default()
                         .disableClassFormatChanges()
                         .with(AgentBuilder.RedefinitionStrategy.RETRANSFORMATION)
@@ -1579,18 +1610,22 @@ public class NMSBinding implements INMSBinding {
                 IrisLogging.reportError(C.RED + "Failed to inject Bukkit", e);
                 ResettableClassFileTransformer partialServerLevel = serverLevelTransformer;
                 ResettableClassFileTransformer partialStorageAccess = levelStorageAccessTransformer;
+                ResettableClassFileTransformer partialPluginClassLoader = pluginClassLoaderTransformer;
                 serverLevelTransformer = null;
                 levelStorageAccessTransformer = null;
+                pluginClassLoaderTransformer = null;
                 for (ResettableClassFileTransformer partial : new ResettableClassFileTransformer[]{
                         partialServerLevel,
-                        partialStorageAccess
+                        partialStorageAccess,
+                        partialPluginClassLoader
                 }) {
                     if (partial == null) {
                         continue;
                     }
                     try {
                         partial.reset(Agent.getInstrumentation(), AgentBuilder.RedefinitionStrategy.RETRANSFORMATION);
-                    } catch (Throwable ignored) {
+                    } catch (Throwable cleanupFailure) {
+                        IrisLogging.reportError("Failed to remove partial Bukkit lifecycle injection", cleanupFailure);
                     }
                 }
                 return false;
@@ -1637,16 +1672,52 @@ public class NMSBinding implements INMSBinding {
     }
 
     @Override
-    public boolean awaitServerShutdownBoundary(long timeout, TimeUnit unit) {
-        MinecraftServer server = ((CraftServer) Bukkit.getServer()).getHandle().getServer();
-        return ServerShutdownBoundary.await(
+    public boolean isServerStopping() {
+        return ((CraftServer) Bukkit.getServer()).getServer().hasStopped();
+    }
+
+    @Override
+    public ServerShutdownBoundary createServerShutdownBoundary() {
+        MinecraftServer server = ((CraftServer) Bukkit.getServer()).getServer();
+        return new ServerShutdownBoundary(
                 () -> server.hasFullyShutdown,
-                server.getRunningThread(),
-                timeout,
-                unit
+                server.getRunningThread()
         );
     }
 
+    @Override
+    public void deferPluginClassLoaderClose() {
+        synchronized (injected) {
+            if (pluginClassLoaderTransformer == null || pluginClassLoaderCloseDeferred) {
+                return;
+            }
+            Agent.retainClassLoader(getClass().getClassLoader());
+            pluginClassLoaderCloseDeferred = true;
+        }
+    }
+
+    @Override
+    public void releasePluginClassLoaderClose() {
+        ResettableClassFileTransformer transformer;
+        boolean releaseLoader;
+        synchronized (injected) {
+            transformer = pluginClassLoaderTransformer;
+            pluginClassLoaderTransformer = null;
+            releaseLoader = pluginClassLoaderCloseDeferred;
+            pluginClassLoaderCloseDeferred = false;
+        }
+        try {
+            if (transformer != null
+                    && !transformer.reset(Agent.getInstrumentation(), AgentBuilder.RedefinitionStrategy.RETRANSFORMATION)) {
+                throw new IllegalStateException("Failed to remove Iris plugin class loader lifecycle injection");
+            }
+        } finally {
+            if (releaseLoader) {
+                Agent.releaseClassLoader(getClass().getClassLoader());
+            }
+        }
+    }
+
     @Override
     public KMap<Material, List<BlockProperty>> getBlockProperties() {
         KMap<Material, List<BlockProperty>> states = new KMap<>();
@@ -1691,6 +1762,39 @@ public class NMSBinding implements INMSBinding {
         return new FlatLevelSource(settings);
     }
 
+    private static final class PluginClassLoaderInjectionListener extends AgentBuilder.Listener.Adapter {
+        private volatile boolean transformed;
+        private volatile Throwable failure;
+
+        @Override
+        public void onTransformation(TypeDescription type, ClassLoader loader, JavaModule module,
+                                     boolean loaded, DynamicType dynamicType) {
+            transformed = true;
+        }
+
+        @Override
+        public void onError(String typeName, ClassLoader loader, JavaModule module,
+                            boolean loaded, Throwable throwable) {
+            failure = throwable;
+        }
+
+        private void requireInstalled() {
+            if (!transformed || failure != null) {
+                throw new IllegalStateException("Iris plugin class loader lifecycle injection failed", failure);
+            }
+        }
+    }
+
+    private static class PluginClassLoaderCloseAdvice {
+        @Advice.OnMethodEnter(skipOn = Advice.OnNonDefaultValue.class)
+        static boolean enter(@Advice.This ClassLoader loader) throws ReflectiveOperationException {
+            Class<?> installer = Class.forName(
+                    "art.arcane.iris.util.project.agent.Installer", true, ClassLoader.getSystemClassLoader());
+            return Boolean.TRUE.equals(installer.getMethod("deferClassLoaderClose", ClassLoader.class)
+                    .invoke(null, loader));
+        }
+    }
+
     private static class ChunkAccessAdvice {
         @Advice.OnMethodEnter(skipOn = Advice.OnNonDefaultValue.class)
         static boolean enter(@Advice.This ChunkAccess access, @Advice.Argument(1) int index) {

adapters/bukkit/nms/v26_2_R1/src/main/java/art/arcane/iris/core/nms/v26_2_R1/NmsGenerationRegistry.java

@@ -0,0 +1,182 @@
+package art.arcane.iris.core.nms.v26_2_R1;
+
+import art.arcane.iris.spi.PlatformGenerationRegistry;
+import com.google.gson.JsonElement;
+import com.google.gson.JsonParser;
+import com.mojang.serialization.Codec;
+import com.mojang.serialization.JsonOps;
+import net.minecraft.core.Registry;
+import net.minecraft.core.RegistryAccess;
+import net.minecraft.core.registries.Registries;
+import net.minecraft.resources.Identifier;
+import net.minecraft.resources.RegistryOps;
+import net.minecraft.resources.ResourceKey;
+import net.minecraft.world.level.biome.Biome;
+import net.minecraft.world.level.dimension.DimensionType;
+
+import java.util.List;
+import java.util.Locale;
+import java.util.Objects;
+import java.util.function.Supplier;
+
+final class NmsGenerationRegistry implements PlatformGenerationRegistry {
+    private static final String BIOME_REGISTRY = "minecraft:worldgen/biome";
+    private static final String STRUCTURE_REGISTRY = "minecraft:worldgen/structure";
+    private static final String DIMENSION_TYPE_REGISTRY = "minecraft:dimension_type";
+    private static final String BLOCK_REGISTRY = "minecraft:block";
+    private static final String ENTITY_TYPE_REGISTRY = "minecraft:entity_type";
+
+    private final Supplier<RegistryAccess> registryAccess;
+    private final String runtimeIdentity;
+    private final String rendererIdentity;
+
+    NmsGenerationRegistry(
+            Supplier<RegistryAccess> registryAccess,
+            String runtimeIdentity,
+            String rendererIdentity
+    ) {
+        this.registryAccess = Objects.requireNonNull(registryAccess, "registryAccess");
+        this.runtimeIdentity = requireText(runtimeIdentity, "runtimeIdentity");
+        this.rendererIdentity = requireText(rendererIdentity, "rendererIdentity");
+    }
+
+    @Override
+    public String runtimeIdentity() {
+        return runtimeIdentity;
+    }
+
+    @Override
+    public String generatedDefinitionRendererIdentity() {
+        return rendererIdentity;
+    }
+
+    @Override
+    public String customBiomeResourceKey(String identitySha256) {
+        return PlatformGenerationRegistry.contentAddressedCustomBiomeResourceKey(identitySha256);
+    }
+
+    @Override
+    public List<String> legacyCustomBiomeResourceKeys(
+            String packName,
+            String dimensionKey,
+            String customBiomeId
+    ) {
+        return List.of(requireText(dimensionKey, "dimensionKey").toLowerCase(Locale.ROOT)
+                + ":" + requireText(customBiomeId, "customBiomeId").toLowerCase(Locale.ROOT));
+    }
+
+    @Override
+    public String dimensionTypeResourceKey(String packName, String dimensionKey, String dimensionTypeKey) {
+        return "iris:" + requireText(dimensionTypeKey, "dimensionTypeKey").toLowerCase(Locale.ROOT);
+    }
+
+    @Override
+    public Definition definition(String registryKey, String resourceKey) {
+        RegistryAccess access = Objects.requireNonNull(registryAccess.get(), "Minecraft registry access");
+        return switch (registryKey) {
+            case BIOME_REGISTRY -> presence(access, Registries.BIOME, registryKey, resourceKey);
+            case STRUCTURE_REGISTRY -> presence(access, Registries.STRUCTURE, registryKey, resourceKey);
+            case DIMENSION_TYPE_REGISTRY -> presence(
+                    access,
+                    Registries.DIMENSION_TYPE,
+                    registryKey,
+                    resourceKey
+            );
+            case BLOCK_REGISTRY -> presence(access, Registries.BLOCK, registryKey, resourceKey);
+            case ENTITY_TYPE_REGISTRY -> presence(access, Registries.ENTITY_TYPE, registryKey, resourceKey);
+            default -> throw new IllegalArgumentException("Unsupported generation registry: " + registryKey);
+        };
+    }
+
+    @Override
+    public Definition canonicalDefinition(String registryKey, String resourceKey, String sourceJson) {
+        RegistryAccess access = Objects.requireNonNull(registryAccess.get(), "Minecraft registry access");
+        return switch (registryKey) {
+            case BIOME_REGISTRY -> canonicalize(access, Biome.DIRECT_CODEC, sourceJson);
+            case DIMENSION_TYPE_REGISTRY -> canonicalize(access, DimensionType.DIRECT_CODEC, sourceJson);
+            default -> throw new IllegalArgumentException(
+                    "Registry does not accept generated JSON definitions: " + registryKey
+            );
+        };
+    }
+
+    @Override
+    public Definition generatedDefinition(String registryKey, String resourceKey) {
+        RegistryAccess access = Objects.requireNonNull(registryAccess.get(), "Minecraft registry access");
+        return switch (registryKey) {
+            case BIOME_REGISTRY -> exactRegistered(
+                    access,
+                    Registries.BIOME,
+                    Biome.DIRECT_CODEC,
+                    resourceKey
+            );
+            case DIMENSION_TYPE_REGISTRY -> exactRegistered(
+                    access,
+                    Registries.DIMENSION_TYPE,
+                    DimensionType.DIRECT_CODEC,
+                    resourceKey
+            );
+            default -> throw new IllegalArgumentException(
+                    "Registry does not contain Iris-generated definitions: " + registryKey
+            );
+        };
+    }
+
+    private static <T> Definition presence(
+            RegistryAccess access,
+            ResourceKey<? extends Registry<T>> registryKey,
+            String registryResourceKey,
+            String resourceKey
+    ) {
+        Registry<T> registry = access.lookupOrThrow(registryKey);
+        Identifier identifier = requireIdentifier(resourceKey);
+        T value = registry.getValue(identifier);
+        if (value == null) {
+            throw new IllegalStateException("Missing registry definition " + registryKey.identifier()
+                    + " / " + resourceKey + ".");
+        }
+        return Definition.resourceIdentity(registryResourceKey, resourceKey);
+    }
+
+    private static <T> Definition canonicalize(RegistryAccess access, Codec<T> codec, String sourceJson) {
+        RegistryOps<JsonElement> ops = RegistryOps.create(JsonOps.INSTANCE, access);
+        JsonElement source = JsonParser.parseString(Objects.requireNonNull(sourceJson, "sourceJson"));
+        T decoded = codec.parse(ops, source).getOrThrow(IllegalArgumentException::new);
+        JsonElement encoded = codec.encodeStart(ops, decoded).getOrThrow(IllegalStateException::new);
+        return Definition.exactJson(encoded.toString());
+    }
+
+    private static <T> Definition exactRegistered(
+            RegistryAccess access,
+            ResourceKey<? extends Registry<T>> registryKey,
+            Codec<T> codec,
+            String resourceKey
+    ) {
+        Registry<T> registry = access.lookupOrThrow(registryKey);
+        Identifier identifier = requireIdentifier(resourceKey);
+        T value = registry.getValue(identifier);
+        if (value == null) {
+            throw new IllegalStateException("Missing generated registry definition "
+                    + registryKey.identifier() + " / " + resourceKey + ".");
+        }
+        RegistryOps<JsonElement> ops = RegistryOps.create(JsonOps.INSTANCE, access);
+        JsonElement encoded = codec.encodeStart(ops, value).getOrThrow(IllegalStateException::new);
+        return Definition.exactJson(encoded.toString());
+    }
+
+    private static Identifier requireIdentifier(String resourceKey) {
+        Identifier identifier = Identifier.tryParse(resourceKey);
+        if (identifier == null) {
+            throw new IllegalArgumentException("Invalid registry resource key: " + resourceKey);
+        }
+        return identifier;
+    }
+
+    private static String requireText(String value, String label) {
+        String required = Objects.requireNonNull(value, label).trim();
+        if (required.isEmpty()) {
+            throw new IllegalArgumentException(label + " must not be blank.");
+        }
+        return required;
+    }
+}

adapters/bukkit/nms/v26_2_R1/src/test/java/art/arcane/iris/core/nms/v26_2_R1/CustomBiomeSourceStructureContractTest.java

@@ -42,10 +42,10 @@ public class CustomBiomeSourceStructureContractTest {
         assertTrue(source.contains("tryAcquireGenerationLease(\"bukkit_spawn_biome\")"));
         assertFalse(source.contains("Iris spawn biome lookup was rejected during an engine transition"));
         assertFalse(source.contains("Iris spawn biome lookup has no active engine runtime"));
-        assertTrue(source.contains("vanillaSpawnBiomes.get(biome.value())"));
-        assertTrue(source.contains("tryAcquireGenerationLease(\"bukkit_structure_biome\")"));
+        assertTrue(source.contains("runtimeBiomeState().vanillaSpawnBiomes().get(biome.value())"));
+        assertTrue(source.contains("requireGenerationLease(\n                     \"bukkit_structure_biome\""));
         assertTrue(source.contains("tryAcquireGenerationLease(\"bukkit_biomes_within\")"));
-        assertTrue(source.contains("tryAcquireGenerationLease(\"bukkit_visible_biome\")"));
+        assertTrue(source.contains("requireGenerationLease(\n                     \"bukkit_visible_biome\""));
         assertTrue(source.contains("if (engine.isClosed())"));
         assertTrue(source.contains("engine.isClosing() || e.isExpectedTeardown()"));
         assertTrue(source.contains("catch (GenerationSessionException e)"));
@@ -140,7 +140,7 @@ public class CustomBiomeSourceStructureContractTest {
         assertTrue(lookupEnd > lookupStart);
         String lookup = source.substring(lookupStart, lookupEnd);
 
-        assertTrue(lookup.contains("tryAcquireGenerationLease(\"bukkit_visible_biome\")"));
+        assertTrue(lookup.contains("requireGenerationLease(\n                     \"bukkit_visible_biome\""));
         assertTrue(lookup.contains("prepareVisibleBiomeBatch()"));
         assertTrue(lookup.contains("getVisibleNoiseBiomeWithActiveGenerationLease(x, y, z, sampler)"));
         assertTrue(lookup.indexOf("prepareVisibleBiomeBatch()")

adapters/bukkit/nms/v26_2_R1/src/test/java/art/arcane/iris/core/nms/v26_2_R1/GenerationHistoryRoutingContractTest.java

@@ -0,0 +1,164 @@
+package art.arcane.iris.core.nms.v26_2_R1;
+
+import org.junit.Test;
+
+import java.io.IOException;
+import java.nio.file.Files;
+import java.nio.file.Path;
+
+import static org.junit.Assert.assertFalse;
+import static org.junit.Assert.assertTrue;
+
+public final class GenerationHistoryRoutingContractTest {
+    @Test
+    public void everyChunkStageScopesItsHistoryRuntimeBeforeSessionAdmission() throws IOException {
+        String source = chunkGeneratorSource();
+
+        assertRoutedStage(source, "public void createStructures(", "private void adjustGeneratedStructures");
+        assertRoutedStage(source, "public void createReferences(", "public CompletableFuture<ChunkAccess> createBiomes");
+        assertRoutedStage(source, "public CompletableFuture<ChunkAccess> createBiomes", "public void buildSurface");
+        assertRoutedStage(source, "public void buildSurface(", "public void applyCarvers(");
+        assertRoutedStage(source, "public void applyCarvers(", "public CompletableFuture<ChunkAccess> fillFromNoise");
+        assertRoutedStage(source, "public void spawnOriginalMobs(", "private boolean allowsRoutedDiscreteGeneration(");
+        assertRoutedStage(
+                source,
+                "public void applyBiomeDecoration(WorldGenLevel generatoraccessseed, ChunkAccess ichunkaccess, StructureManager structuremanager, boolean vanilla)",
+                "public BiomeGenerationSettings getBiomeGenerationSettings");
+
+        String baseHeight = method(source, "public int getBaseHeight(", "public NoiseColumn getBaseColumn(");
+        String baseColumn = method(source, "public NoiseColumn getBaseColumn(", "private GenerationSessionLease requireGenerationLease");
+        assertBefore(baseHeight, "openHistoryCoordinateScope(", "engine.acquireGenerationLease(");
+        assertBefore(baseColumn, "openHistoryCoordinateScope(", "engine.acquireGenerationLease(");
+    }
+
+    @Test
+    public void asyncNoiseKeepsRouteUntilCompletionAndReopensThreadLocalScopes() throws IOException {
+        String source = chunkGeneratorSource();
+        String noise = method(
+                source,
+                "public CompletableFuture<ChunkAccess> fillFromNoise",
+                "private static boolean isCancellationFailure");
+
+        assertBefore(noise, "requireNoiseGenerationStage(", "openHistoryRoute(");
+        assertBefore(noise, "openHistoryRoute(", "requireGenerationLease(");
+        assertTrue(count(noise, "openHistoryRuntimeScope(route)") >= 2);
+        assertBefore(noise, ".thenApply(filled ->", "pipeline.whenComplete(");
+        assertTrue(noise.contains("closeNoisePipelineResources(\n                        failure, lease, route, stage)"));
+    }
+
+    @Test
+    public void transitionBandSuppressesDiscreteGenerationAndCrossingStarts() throws IOException {
+        String source = chunkGeneratorSource();
+        String structures = method(source, "public void createStructures(", "private void adjustGeneratedStructures");
+        String adjustment = method(source, "private void adjustGeneratedStructures", "public ChunkGeneratorStructureState createState");
+        String decoration = method(
+                source,
+                "public void applyBiomeDecoration(WorldGenLevel generatoraccessseed, ChunkAccess ichunkaccess, StructureManager structuremanager, boolean vanilla)",
+                "public BiomeGenerationSettings getBiomeGenerationSettings");
+
+        assertTrue(structures.contains("allowsRoutedDiscreteGeneration(access, ChunkStatus.STRUCTURE_STARTS)"));
+        assertTrue(decoration.contains("allowsRoutedDiscreteGeneration(ichunkaccess, ChunkStatus.FEATURES)"));
+        String discrete = method(source, "private boolean allowsRoutedDiscreteGeneration(",
+                "private static WeightedList<MobSpawnSettings.SpawnerData> mergeSpawnTables(");
+        assertTrue(discrete.contains("chunk.getPersistedStatus().isOrAfter(stage)"));
+        assertTrue(discrete.contains("engine.getComplex().allowsNewGenerationChunk(chunkPos.x(), chunkPos.z())"));
+        assertBefore(decoration, "delegate.applyBiomeDecoration(", "claimGeneratedSemantics(route,");
+        assertTrue(adjustment.contains("start.getBoundingBox()"));
+        assertTrue(adjustment.contains("allowsNewGenerationFootprint("));
+        assertTrue(adjustment.contains("NativeStructureOwnershipStore.discard("));
+    }
+
+    @Test
+    public void biomeCachesAndVisibleHistoricalBiomesAreRuntimeAware() throws IOException {
+        String source = Files.readString(Path.of(System.getProperty("iris.customBiomeSource")))
+                .replace("\r\n", "\n");
+        String visibleResolution = method(
+                source,
+                "private Holder<Biome> resolveVisibleBiomeHolder(",
+                "private Holder<Biome> resolveCustomHolder(");
+        String activeBatch = method(
+                source,
+                "Holder<Biome> getVisibleNoiseBiomeWithActiveGenerationLease(\n            int x,",
+                "private GenerationSessionLease tryAcquireGenerationLease");
+
+        assertTrue(source.contains("record RuntimeNoiseKey(int runtimeId, long coordinateKey)"));
+        assertTrue(source.contains("record RuntimeColumnKey(int runtimeId, long coordinateKey)"));
+        assertTrue(source.contains("ConcurrentHashMap<Integer, RuntimeBiomeState> runtimeBiomeStates"));
+        assertTrue(source.contains("addGenerationRuntimeRetirementListener(this::evictRuntimeCaches)"));
+        assertTrue(source.contains("runtimeBiomeStates.remove(runtimeId)"));
+        assertTrue(source.contains("noiseBiomeCache.keySet().removeIf(key -> key.runtimeId() == runtimeId)"));
+        assertBefore(visibleResolution, "historicalPhysicalBiomeKeyAt(", "resolveBiomeResolution(");
+        assertFalse(activeBatch.contains("openHistoryCoordinateScope("));
+
+        String chunkGenerator = chunkGeneratorSource();
+        assertTrue(chunkGenerator.contains("addGenerationRuntimeRetirementListener(this::evictRuntimeCaches)"));
+        assertTrue(chunkGenerator.contains("mergedSpawnTables.keySet().removeIf(key -> key.runtimeId() == runtimeId)"));
+    }
+
+    @Test
+    public void importedFeatureTablesAreRuntimeScopedAndRetiredCentrally() throws IOException {
+        String stage = Files.readString(Path.of(System.getProperty("iris.nmsChunkGeneratorSource"))
+                        .resolveSibling("ImportedFeatureStage.java"))
+                .replace("\r\n", "\n");
+        String generator = chunkGeneratorSource();
+
+        assertTrue(stage.contains("ConcurrentHashMap<Integer, RuntimeFeatureState> runtimeStates"));
+        assertTrue(stage.contains("runtimeStates.get(engine.getCacheID())"));
+        assertTrue(stage.contains("runtimeStates.remove(runtimeId)"));
+        assertFalse(stage.contains("volatile FeatureTable featureTable"));
+        assertFalse(stage.contains("volatile int settledRuntimeId"));
+        assertTrue(generator.contains("importedFeatures.evictRuntime(runtimeId)"));
+    }
+
+    @Test
+    public void nativeReferencesResolvePolicyInTheOriginRuntime() throws IOException {
+        String source = Files.readString(Path.of(System.getProperty("iris.nativeStructureVolumeIndexSource"))
+                        .resolveSibling("NativeStructureReferenceRepair.java"))
+                .replace("\r\n", "\n");
+        String references = method(source, "public static void createReferences(",
+                "private static GenerationHistoryRuntimeRouter.CoordinateScope openOriginRuntimeScope(");
+
+        assertBefore(references, "openOriginRuntimeScope(engine, originChunkX, originChunkZ)", "scanStart(");
+        assertBefore(references, "scanStart(", "isTargetRelevant(");
+        assertTrue(source.contains("irisEngine.openGenerationHistoryCoordinateScope(chunkX << 4, chunkZ << 4)"));
+        assertFalse(references.contains("allowsNewGenerationFootprint("));
+    }
+
+    private static void assertRoutedStage(String source, String start, String end) {
+        String stage = method(source, start, end);
+        assertBefore(stage, "requireGenerationStage(", "openHistoryRoute(");
+        assertBefore(stage, "openHistoryRoute(", "requireGenerationLease(");
+        assertBefore(stage, "openHistoryRuntimeScope(route)", "requireGenerationLease(");
+    }
+
+    private static String chunkGeneratorSource() throws IOException {
+        return Files.readString(Path.of(System.getProperty("iris.nmsChunkGeneratorSource")))
+                .replace("\r\n", "\n");
+    }
+
+    private static String method(String source, String startToken, String endToken) {
+        int start = source.indexOf(startToken);
+        int end = source.indexOf(endToken, start);
+        assertTrue("Missing source contract token: " + startToken, start >= 0);
+        assertTrue("Missing source contract token: " + endToken, end > start);
+        return source.substring(start, end);
+    }
+
+    private static void assertBefore(String source, String first, String second) {
+        int firstIndex = source.indexOf(first);
+        int secondIndex = source.indexOf(second);
+        assertTrue("Missing source contract token: " + first, firstIndex >= 0);
+        assertTrue("Missing source contract token: " + second, secondIndex >= 0);
+        assertTrue(first + " must occur before " + second, firstIndex < secondIndex);
+    }
+
+    private static int count(String source, String token) {
+        int count = 0;
+        int index = 0;
+        while ((index = source.indexOf(token, index)) >= 0) {
+            count++;
+            index += token.length();
+        }
+        return count;
+    }
+}

adapters/bukkit/nms/v26_2_R1/src/test/java/art/arcane/iris/core/nms/v26_2_R1/IrisChunkGeneratorFailureContractTest.java

@@ -295,26 +295,29 @@ public class IrisChunkGeneratorFailureContractTest {
 
         assertBefore(productionFill,
                 "BukkitChunkGenerator.GenerationStagePermit stage = requireNoiseGenerationStage(",
+                "GenerationHistoryRuntimeRouter.RuntimeRoute route");
+        assertBefore(productionFill,
+                "GenerationHistoryRuntimeRouter.RuntimeRoute route",
                 "GenerationSessionLease lease");
         assertBefore(productionFill,
                 "requireNoiseGenerationStage(",
                 "\"bukkit_nms_chunk_pipeline\")");
         assertBefore(productionFill,
                 "lease = requireGenerationLease(\"bukkit_nms_chunk_pipeline\")",
-                ".fillFromNoise(blender, randomstate, structuremanager, ichunkaccess)");
+                "delegate.fillFromNoise(");
         assertTrue(productionFill.contains("IrisContext.open(engine, lease.sessionId(), null)"));
+        assertTrue(productionFill.contains("openHistoryRuntimeScope(route)"));
         assertBefore(productionFill, "primeWorldgenHeightmaps(filled)", "pipeline.whenComplete(");
         assertTrue(productionFill.contains("CompletableFuture<ChunkAccess> completion = new CompletableFuture<>()"));
-        assertBefore(completion, "boolean cancelled = isCancellationFailure(failure);", "lease.close();");
-        assertBefore(completion, "lease.close();", "stage.close();");
-        assertBefore(completion, "stage.close();", "completion.complete(filled)");
-        assertBefore(completion, "stage.close();", "completion.cancel(false)");
-        assertBefore(completion, "stage.close();", "completion.completeExceptionally(failure)");
+        assertBefore(completion, "boolean cancelled = isCancellationFailure(failure);", "closeNoisePipelineResources(");
+        assertBefore(completion, "closeNoisePipelineResources(", "completion.complete(filled)");
+        assertBefore(completion, "closeNoisePipelineResources(", "completion.cancel(false)");
+        assertBefore(completion, "closeNoisePipelineResources(", "completion.completeExceptionally(completionFailure)");
         assertTrue(completion.contains("else if (cancelled)"));
         assertFalse(completion.contains("pipeline.isCancelled()"));
         assertFalse(completion.contains("finally"));
         assertTrue(productionFill.contains("catch (RuntimeException | Error failure)"));
-        assertTrue(productionFill.contains("lease.close();\n            stage.close();\n            throw failure;"));
+        assertTrue(productionFill.contains("lease.close();\n            closeHistoryRoute(route, failure);\n            stage.close();\n            throw failure;"));
         assertTrue(productionFill.contains("return completion;"));
         assertFalse(productionFill.contains("return pipeline;"));
         assertFalse(productionFill.contains("pipeline.cancel("));
@@ -422,6 +425,9 @@ public class IrisChunkGeneratorFailureContractTest {
         String structures = method(source, "public void createStructures(", "private void adjustGeneratedStructures");
         String references = method(source, "public void createReferences(", "public CompletableFuture<ChunkAccess> createBiomes");
         String biomes = method(source, "public CompletableFuture<ChunkAccess> createBiomes", "public void buildSurface");
+        String surface = method(source, "public void buildSurface(", "public void applyCarvers(");
+        String carvers = method(source, "public void applyCarvers(", "public CompletableFuture<ChunkAccess> fillFromNoise");
+        String mobs = method(source, "public void spawnOriginalMobs(", "private boolean allowsRoutedDiscreteGeneration(");
         String noise = method(source, "public CompletableFuture<ChunkAccess> fillFromNoise", "private static boolean isCancellationFailure");
         String decoration = method(source,
                 "public void applyBiomeDecoration(WorldGenLevel generatoraccessseed, ChunkAccess ichunkaccess, StructureManager structuremanager, boolean vanilla)",
@@ -430,6 +436,9 @@ public class IrisChunkGeneratorFailureContractTest {
         assertStageBeforeLease(structures, "bukkit_nms_create_structures");
         assertStageBeforeLease(references, "bukkit_nms_create_references");
         assertStageBeforeLease(biomes, "bukkit_nms_create_biomes");
+        assertStageBeforeLease(surface, "bukkit_nms_build_surface");
+        assertStageBeforeLease(carvers, "bukkit_nms_apply_carvers");
+        assertStageBeforeLease(mobs, "bukkit_nms_spawn_original_mobs");
         assertBefore(noise,
                 "requireNoiseGenerationStage(",
                 "requireGenerationLease(\"bukkit_nms_chunk_pipeline\")");
@@ -437,7 +446,7 @@ public class IrisChunkGeneratorFailureContractTest {
         assertBefore(decoration,
                 "requireGenerationLease(\"bukkit_nms_biome_decoration\")",
                 "importedFeatures.prepare(generatoraccessseed)");
-        assertEquals(4, occurrences(source, "requireGenerationStage(\"bukkit_nms_"));
+        assertEquals(7, occurrences(source, "requireGenerationStage(\"bukkit_nms_"));
         assertEquals(2, occurrences(source, "requireNoiseGenerationStage("));
         assertFalse(source.contains("GenerationSessionManager"));
     }

adapters/bukkit/nms/v26_2_R1/src/test/java/art/arcane/iris/core/nms/v26_2_R1/NMSBindingShutdownBoundaryContractTest.java

@@ -6,16 +6,48 @@ import java.nio.file.Files;
 import java.nio.file.Path;
 
 import static org.junit.Assert.assertTrue;
+import static org.junit.Assert.assertFalse;
 
 public class NMSBindingShutdownBoundaryContractTest {
+    @Test
+    public void shutdownClassificationUsesTheServerStopFlagInsteadOfPluginEnablement() throws Exception {
+        String source = Files.readString(Path.of(System.getProperty("iris.nmsBindingSource")));
+        String stopping = section(source, "public boolean isServerStopping()", "public ServerShutdownBoundary createServerShutdownBoundary");
+
+        assertTrue(stopping.contains("((CraftServer) Bukkit.getServer()).getServer().hasStopped()"));
+        assertFalse(stopping.contains("isEnabled()"));
+        assertFalse(stopping.contains("isRunning()"));
+    }
+
+    @Test
+    public void pluginLoaderGuardUsesSystemAgentIdentityAndIsRemovedAtRelease() throws Exception {
+        String source = Files.readString(Path.of(System.getProperty("iris.nmsBindingSource")));
+        String injection = section(source, "public boolean injectBukkit()", "public void ensureServerLevelInjection()");
+        String guard = section(source, "private static class PluginClassLoaderCloseAdvice", "private static class ChunkAccessAdvice");
+        String release = section(source, "public void releasePluginClassLoaderClose()", "public KMap<Material, List<BlockProperty>> getBlockProperties");
+
+        assertTrue(injection.contains("Agent.requireClassLoaderCloseDeferral()"));
+        assertTrue(injection.contains("getMethod(\"close\").getDeclaringClass()"));
+        assertTrue(injection.contains("Advice.to(PluginClassLoaderCloseAdvice.class)"));
+        assertTrue(guard.contains("skipOn = Advice.OnNonDefaultValue.class"));
+        assertTrue(guard.contains("ClassLoader.getSystemClassLoader()"));
+        assertTrue(guard.contains("getMethod(\"deferClassLoaderClose\", ClassLoader.class)"));
+        assertTrue(guard.contains(".invoke(null, loader)"));
+        assertFalse(guard.contains("Bukkit.getPluginManager()"));
+        assertTrue(release.indexOf("transformer.reset(") > release.indexOf("pluginClassLoaderCloseDeferred = false"));
+        assertTrue(release.indexOf("Agent.releaseClassLoader(") > release.indexOf("transformer.reset("));
+    }
+
     @Test
     public void shutdownBoundaryUsesPaperFullyShutdownStateAndServerThread() throws Exception {
         String source = Files.readString(Path.of(System.getProperty("iris.nmsBindingSource"))).replace("\r\n", "\n");
-        String boundary = section(source, "public boolean awaitServerShutdownBoundary", "public KMap<Material, List<BlockProperty>> getBlockProperties");
+        String boundary = section(source, "public ServerShutdownBoundary createServerShutdownBoundary", "public KMap<Material, List<BlockProperty>> getBlockProperties");
 
-        assertTrue(boundary.contains("ServerShutdownBoundary.await("));
+        assertTrue(boundary.contains("new ServerShutdownBoundary("));
         assertTrue(boundary.contains("server.hasFullyShutdown"));
         assertTrue(boundary.contains("server.getRunningThread()"));
+        assertTrue(boundary.contains("((CraftServer) Bukkit.getServer()).getServer()"));
+        assertFalse(boundary.contains("getHandle()"));
     }
 
     private static String section(String source, String startMarker, String endMarker) {

adapters/bukkit/nms/v26_2_R1/src/test/java/art/arcane/iris/nativegen/NativeStructureVolumeIndexTest.java

@@ -19,6 +19,7 @@ import org.junit.Test;
 
 import java.nio.file.Files;
 import java.nio.file.Path;
+import java.lang.reflect.Proxy;
 import java.util.List;
 import java.util.concurrent.CountDownLatch;
 import java.util.concurrent.ExecutorService;
@@ -80,6 +81,30 @@ public class NativeStructureVolumeIndexTest {
         assertEquals(coldResolutions, resolver.resolutions());
     }
 
+    @Test
+    public void runtimeBucketsStayIsolatedAndRetirementEvictsOnlyTheirEntries() {
+        AtomicInteger runtimeId = new AtomicInteger(1);
+        Engine engine = runtimeEngine(runtimeId);
+        CountingResolver resolver = new CountingResolver(0, 0);
+        NativeStructureVolumeIndex index = NativeStructureVolumeIndex.forTesting(resolver);
+
+        index.resolve(engine, 0, 0, 15, 15);
+        assertEquals(289, resolver.resolutions());
+        index.resolve(engine, 0, 0, 15, 15);
+        assertEquals(289, resolver.resolutions());
+
+        runtimeId.set(2);
+        index.resolve(engine, 0, 0, 15, 15);
+        assertEquals(578, resolver.resolutions());
+        index.resolve(engine, 0, 0, 15, 15);
+        assertEquals(578, resolver.resolutions());
+
+        index.evictRuntime(1);
+        runtimeId.set(1);
+        index.resolve(engine, 0, 0, 15, 15);
+        assertEquals(867, resolver.resolutions());
+    }
+
     @Test
     public void independentIndexesResolveIdenticalVolumesFromTheSameSeed() {
         NativeStructureVolumeIndex first = NativeStructureVolumeIndex.forTesting(new CountingResolver(0, 0));
@@ -188,12 +213,45 @@ public class NativeStructureVolumeIndexTest {
         assertTrue(source.contains("isStructureChunk("));
     }
 
+    @Test
+    public void originResolutionRoutesAndCachesByScopedRuntime() throws Exception {
+        String source = Files.readString(Path.of(System.getProperty("iris.nativeStructureVolumeIndexSource")));
+
+        assertTrue(source.contains("openHistoryCoordinateScope(engine, chunkX, chunkZ)"));
+        assertTrue(source.contains("new RuntimeChunkKey(runtimeId, chunkKey(chunkX, chunkZ))"));
+        assertTrue(source.contains("addGenerationRuntimeRetirementListener(retirementListener)"));
+        assertTrue(source.contains("originCache.keySet().removeIf(key -> key.runtimeId() == runtimeId)"));
+        assertTrue(source.contains("queryCache.keySet().removeIf(key -> key.runtimeId() == runtimeId)"));
+    }
+
     private static StructureStart swampHut(int chunkX, int chunkZ, int x, int z) {
         Structure source = new SwampHutStructure(new Structure.StructureSettings(HolderSet.empty()));
         SwampHutPiece piece = new SwampHutPiece(RandomSource.create(17L), x, z);
         return new StructureStart(source, new ChunkPos(chunkX, chunkZ), 0, new PiecesContainer(List.of(piece)));
     }
 
+    private static Engine runtimeEngine(AtomicInteger runtimeId) {
+        return (Engine) Proxy.newProxyInstance(
+                Engine.class.getClassLoader(),
+                new Class<?>[]{Engine.class},
+                (proxy, method, arguments) -> {
+                    if (method.getName().equals("getCacheID")) {
+                        return runtimeId.get();
+                    }
+                    if (method.getName().equals("hashCode")) {
+                        return System.identityHashCode(proxy);
+                    }
+                    if (method.getName().equals("equals")) {
+                        return proxy == arguments[0];
+                    }
+                    if (method.getName().equals("toString")) {
+                        return "runtime-engine-" + runtimeId.get();
+                    }
+                    throw new UnsupportedOperationException(method.getName());
+                }
+        );
+    }
+
     private static int findDisjointWindow(int chunkX, int chunkZ) {
         long sourceMask = NativeStructureVolumeIndex.originWindowStripeMask(chunkX, chunkZ);
         for (int candidate = 64; candidate < 16_384; candidate += 17) {

adapters/bukkit/plugin/src/main/java/art/arcane/iris/Iris.java

@@ -55,6 +55,7 @@ import art.arcane.volmlib.util.director.help.DirectorMiniMenu;
 import art.arcane.volmlib.util.localization.BukkitLanguageSwitcher;
 import art.arcane.iris.core.link.MultiverseCoreLink;
 import art.arcane.iris.core.nms.INMS;
+import art.arcane.iris.core.nms.ServerShutdownBoundary;
 import art.arcane.iris.core.gui.BukkitGuiHost;
 import art.arcane.iris.core.gui.PregeneratorJob;
 import art.arcane.iris.core.service.BoardSVC;
@@ -139,6 +140,8 @@ import org.jetbrains.annotations.Nullable;
 
 import java.io.File;
 import java.io.FileOutputStream;
+import java.io.FileDescriptor;
+import java.io.PrintStream;
 import java.io.PrintWriter;
 import java.lang.reflect.Modifier;
 import java.util.ArrayList;
@@ -160,6 +163,7 @@ import java.util.regex.Pattern;
 @SuppressWarnings("CanBeFinal")
 public class Iris extends VolmitPlugin implements Listener, ReloadAware {
     private static final long SERVER_SHUTDOWN_BOUNDARY_TIMEOUT_SECONDS = 300L;
+    private static final PrintStream SHUTDOWN_ERRORS = new PrintStream(new FileOutputStream(FileDescriptor.err), true);
     private static final long SERVER_STOP_PREGEN_TIMEOUT_MILLIS = 30000L;
     private static final Queue<Runnable> syncJobs = new ShurikenQueue<>();
 
@@ -190,6 +194,8 @@ public class Iris extends VolmitPlugin implements Listener, ReloadAware {
     private final AtomicBoolean sharedRuntimeClosed = new AtomicBoolean(false);
     private final AtomicBoolean startupBoundaryRestart = new AtomicBoolean(false);
     private final AtomicBoolean terminalCleanupCompleted = new AtomicBoolean(false);
+    private final AtomicBoolean runtimeTeardownFailed = new AtomicBoolean(false);
+    private volatile boolean generatorDrainCompleted;
     private volatile PlaceholderRegistration papiRegistration;
     private volatile IrisPapiListener papiListener;
     private volatile IrisPapiState papiState;
@@ -206,6 +212,7 @@ public class Iris extends VolmitPlugin implements Listener, ReloadAware {
     private BukkitDebugDump debugDump;
     private volatile SettingsHotloadWatch settingsHotloadWatch;
     private volatile Thread serverLifecycleThread;
+    private volatile ServerShutdownBoundary serverShutdownBoundary;
 
     public static VolmitSender getSender() {
         if (sender == null) {
@@ -427,6 +434,10 @@ public class Iris extends VolmitPlugin implements Listener, ReloadAware {
         if (e == null) {
             return;
         }
+        if (instance != null && instance.serverStopTeardownDeferred.get()) {
+            e.printStackTrace(SHUTDOWN_ERRORS);
+            return;
+        }
 
         boolean debug = false;
         if (instance != null) {
@@ -466,6 +477,11 @@ public class Iris extends VolmitPlugin implements Listener, ReloadAware {
     public static void reportError(String context, Throwable e) {
         Throwable error = e == null ? new IllegalStateException("Unknown Iris failure") : e;
         String message = context == null || context.isBlank() ? "Unhandled Iris failure." : context;
+        if (instance != null && instance.serverStopTeardownDeferred.get()) {
+            SHUTDOWN_ERRORS.println("[Iris] " + message);
+            error.printStackTrace(SHUTDOWN_ERRORS);
+            return;
+        }
 
         try {
             if (instance != null) {
@@ -603,6 +619,8 @@ public class Iris extends VolmitPlugin implements Listener, ReloadAware {
         sharedRuntimeClosed.set(false);
         startupBoundaryRestart.set(false);
         terminalCleanupCompleted.set(false);
+        runtimeTeardownFailed.set(false);
+        generatorDrainCompleted = false;
         deferredShutdownGenerators.clear();
         MultiBurst.burst.reopen();
         MultiBurst.ioBurst.reopen();
@@ -742,6 +760,7 @@ public class Iris extends VolmitPlugin implements Listener, ReloadAware {
     public void addShutdownHook() {
         removeShutdownHook();
         serverLifecycleThread = Thread.currentThread();
+        serverShutdownBoundary = INMS.isBound() ? INMS.get().createServerShutdownBoundary() : null;
         shutdownHook = new Thread(this::runShutdownHook, "Iris-ShutdownHook");
         try {
             Runtime.getRuntime().addShutdownHook(shutdownHook);
@@ -963,6 +982,10 @@ public class Iris extends VolmitPlugin implements Listener, ReloadAware {
                 drainWorldGenerators(reason, timeoutSeconds);
             }
 
+            if (serverStopTeardownDeferred.get() && !generatorDrainCompleted) {
+                return;
+            }
+
             if (services != null && servicesDisabled.compareAndSet(false, true)) {
                 // Only services whose onEnable actually completed; disabling a service that
                 // never initialized runs teardown against uninitialized state.
@@ -970,6 +993,7 @@ public class Iris extends VolmitPlugin implements Listener, ReloadAware {
                     try {
                         service.onDisable();
                     } catch (Throwable e) {
+                        runtimeTeardownFailed.set(true);
                         Iris.reportError("Failed to disable " + service.getClass().getSimpleName() + ".", e);
                     }
                 }
@@ -979,8 +1003,18 @@ public class Iris extends VolmitPlugin implements Listener, ReloadAware {
                 return;
             }
 
-            J.attempt(MultiBurst.burst::close);
-            J.attempt(MultiBurst.ioBurst::close);
+            try {
+                MultiBurst.burst.close();
+            } catch (Throwable failure) {
+                runtimeTeardownFailed.set(true);
+                Iris.reportError("Failed to close Iris generation workers.", failure);
+            }
+            try {
+                MultiBurst.ioBurst.close();
+            } catch (Throwable failure) {
+                runtimeTeardownFailed.set(true);
+                Iris.reportError("Failed to close Iris I/O workers.", failure);
+            }
             clearQueues();
             IrisServices.clear();
         }
@@ -988,6 +1022,7 @@ public class Iris extends VolmitPlugin implements Listener, ReloadAware {
 
     private void quiesceRuntimeForServerShutdown(String reason) {
         serverStopTeardownDeferred.set(true);
+        INMS.get().deferPluginClassLoaderClose();
         JigsawStudioService jigsawStudioService = IrisServices.getOrNull(JigsawStudioService.class);
         if (jigsawStudioService != null) {
             try {
@@ -1060,29 +1095,35 @@ public class Iris extends VolmitPlugin implements Listener, ReloadAware {
             return;
         }
         if (!awaitServerShutdownBoundary()) {
-            Iris.warn("Iris skipped JVM-hook runtime teardown because Paper did not reach its post-world-close boundary.");
+            SHUTDOWN_ERRORS.println("[Iris] Paper did not reach its post-world-close boundary; retaining the runtime and plugin class loader until JVM exit.");
             return;
         }
         finishDeferredRuntimeTeardown("shutdown-hook", 30L);
     }
 
     private boolean awaitServerShutdownBoundary() {
-        if (!INMS.isBound()) {
+        ServerShutdownBoundary boundary = serverShutdownBoundary;
+        if (boundary == null) {
             return true;
         }
         try {
-            return INMS.get().awaitServerShutdownBoundary(
+            return boundary.await(
                     SERVER_SHUTDOWN_BOUNDARY_TIMEOUT_SECONDS,
                     TimeUnit.SECONDS
             );
         } catch (Throwable e) {
-            Iris.reportError("Failed to await Paper's post-world-close shutdown boundary.", e);
+            SHUTDOWN_ERRORS.println("[Iris] Failed to await Paper's post-world-close shutdown boundary.");
+            e.printStackTrace(SHUTDOWN_ERRORS);
             return false;
         }
     }
 
     private void finishDeferredRuntimeTeardown(String reason, long timeoutSeconds) {
         teardownRuntime(reason, timeoutSeconds);
+        if (serverStopTeardownDeferred.get() && !generatorDrainCompleted) {
+            SHUTDOWN_ERRORS.println("[Iris] Runtime cleanup is incomplete; retaining services, pools and the plugin class loader until JVM exit.");
+            return;
+        }
         finishTerminalCleanup();
     }
 
@@ -1094,12 +1135,36 @@ public class Iris extends VolmitPlugin implements Listener, ReloadAware {
         try {
             runPostShutdown();
         } catch (Throwable e) {
+            runtimeTeardownFailed.set(true);
             Iris.reportError("Failed to run Iris post-shutdown cleanup.", e);
         } finally {
+            if (serverStopTeardownDeferred.get() && hasActiveShutdownResources()) {
+                runtimeTeardownFailed.set(true);
+                SHUTDOWN_ERRORS.println("[Iris] Owned background work remains active after cleanup; retaining the plugin class loader until JVM exit.");
+            }
             IrisPlatforms.unbind();
+            if (serverStopTeardownDeferred.get() && runtimeTeardownFailed.get()) {
+                SHUTDOWN_ERRORS.println("[Iris] Runtime cleanup failed; retaining the plugin class loader until JVM exit.");
+            } else {
+                try {
+                    INMS.get().releasePluginClassLoaderClose();
+                } catch (Throwable failure) {
+                    SHUTDOWN_ERRORS.println("[Iris] Failed to release the plugin class loader after runtime cleanup.");
+                    failure.printStackTrace(SHUTDOWN_ERRORS);
+                }
+            }
         }
     }
 
+    private boolean hasActiveShutdownResources() {
+        if (!MultiBurst.burst.isTerminated() || !MultiBurst.ioBurst.isTerminated()) {
+            return true;
+        }
+        return services != null
+                && services.get(PreservationSVC.class) instanceof PreservationSVC preservation
+                && preservation.hasActiveResources();
+    }
+
     private void drainWorldGenerators(String reason, long timeoutSeconds) {
         List<World> irisWorlds = new ArrayList<>();
         List<PlatformChunkGenerator> generators = new ArrayList<>();
@@ -1115,6 +1180,7 @@ public class Iris extends VolmitPlugin implements Listener, ReloadAware {
             }
         }
         if (generators.isEmpty()) {
+            generatorDrainCompleted = true;
             Iris.debug("No Iris worlds to freeze.");
             return;
         }
@@ -1139,12 +1205,15 @@ public class Iris extends VolmitPlugin implements Listener, ReloadAware {
         try {
             CompletableFuture.allOf(closes.toArray(new CompletableFuture<?>[0]))
                     .get(timeoutSeconds, TimeUnit.SECONDS);
-            Iris.debug("All Iris chunk generators parked. Safe to unload.");
+            generatorDrainCompleted = closes.size() == generators.size();
+            if (generatorDrainCompleted) {
+                Iris.debug("All Iris chunk generators parked. Safe to unload.");
+            }
         } catch (TimeoutException e) {
-            Iris.warn("Iris generator drain timed out after " + timeoutSeconds + "s; unload proceeding anyway.");
+            Iris.reportError("Iris generator drain timed out after " + timeoutSeconds + "s.", e);
         } catch (InterruptedException e) {
             Thread.currentThread().interrupt();
-            Iris.warn("Iris generator drain interrupted; unload proceeding.");
+            Iris.reportError("Iris generator drain was interrupted.", e);
         } catch (ExecutionException e) {
             Iris.reportError(e.getCause() == null ? e : e.getCause());
         }

adapters/bukkit/plugin/src/main/java/art/arcane/iris/core/BukkitWorldReconciler.java

@@ -765,13 +765,13 @@ public final class BukkitWorldReconciler {
 
         @Override
         public void requireDimensionLoadable(NamespacedKey worldKey, String dimension) {
-            File snapshotRoot = snapshotRoot(worldKey);
-            IrisWorldGeneratorResolver.requireSnapshotLoadable(snapshotRoot);
             String configuredWorldName = configuredWorldName(worldKey);
             IrisDimension irisDimension = IrisWorldGeneratorResolver.loadDimension(configuredWorldName, dimension);
             if (irisDimension == null) {
                 throw new IllegalStateException("Could not resolve the Iris dimension \"" + dimension + "\".");
             }
+            File snapshotRoot = snapshotRoot(worldKey);
+            IrisWorldGeneratorResolver.requireSnapshotLoadable(snapshotRoot);
         }
 
         private File snapshotRoot(NamespacedKey worldKey) {
@@ -788,7 +788,7 @@ public final class BukkitWorldReconciler {
                 throw new IllegalStateException("Iris world storage does not match the current platform layout for "
                         + worldKey + ".");
             }
-            return IrisWorldStorage.requireFrozenPackRoot(dimensionRoot);
+            return IrisWorldStorage.requireActiveGenerationPackRoot(dimensionRoot);
         }
     }
 }

adapters/bukkit/plugin/src/main/java/art/arcane/iris/core/IrisWorldGeneratorResolver.java

@@ -20,6 +20,7 @@ package art.arcane.iris.core;
 
 import art.arcane.iris.Iris;
 import art.arcane.iris.core.lifecycle.WorldLifecycleStaging;
+import art.arcane.iris.core.lifecycle.WorldReplacementSeed;
 import art.arcane.iris.core.loader.IrisData;
 import art.arcane.iris.core.pack.BrokenPackException;
 import art.arcane.iris.core.pack.PackDownloader;
@@ -32,6 +33,13 @@ import art.arcane.iris.spi.IrisLogging;
 import art.arcane.iris.spi.IrisPlatforms;
 import art.arcane.iris.engine.object.IrisDimension;
 import art.arcane.iris.engine.object.IrisWorld;
+import art.arcane.iris.engine.history.GenerationEpoch;
+import art.arcane.iris.engine.history.GenerationEpochContractFactory;
+import art.arcane.iris.engine.history.GenerationHistory;
+import art.arcane.iris.engine.history.GenerationHistoryPaths;
+import art.arcane.iris.engine.history.GenerationPackFingerprint;
+import art.arcane.iris.engine.history.GenerationRegistryContract;
+import art.arcane.iris.engine.history.GenerationRegistryContractFactory;
 import art.arcane.iris.engine.platform.BukkitChunkGenerator;
 import art.arcane.iris.util.common.plugin.VolmitPlugin;
 import art.arcane.volmlib.util.bukkit.WorldIdentity;
@@ -255,15 +263,21 @@ public final class IrisWorldGeneratorResolver {
         File levelRoot = IrisWorldStorage.levelRoot();
         NamespacedKey worldKey = configuredWorldKey(worldName, levelRoot.getName(), levelRoot);
         String configuredWorldName = IrisWorldStorage.configuredWorldName(worldKey, levelRoot.getName());
-        File pack = IrisWorldStorage.frozenDimensionRoot(
+        File dimensionRoot = IrisWorldStorage.frozenDimensionRoot(
                         Bukkit.getWorldContainer(),
                         levelRoot,
                         configuredWorldName,
                         worldKey
                 )
-                .map(IrisWorldStorage::requireFrozenPackRoot)
                 .orElse(null);
-        IrisDimension dimension = pack == null ? null : IrisData.get(pack).getDimensionLoader().load(id);
+        IrisDimension dimension = null;
+        if (dimensionRoot != null) {
+            long worldSeed = requireStoredWorldSeed(configuredWorldName, dimensionRoot);
+            GenerationHistory history = requireGenerationHistory(dimensionRoot, id, worldSeed);
+            File pack = requireActivePack(history);
+            requireSnapshotLoadable(pack);
+            dimension = requireHistoricalDimension(history, pack, id);
+        }
         if (dimension == null) dimension = IrisData.loadAnyDimension(id, null);
         if (dimension == null) {
             File packsRoot = IrisPlatforms.get().packsFolderNoCreate();
@@ -445,7 +459,7 @@ public final class IrisWorldGeneratorResolver {
             return;
         }
         if (dimensionRoot != null
-                && (IRIS_DIMENSION_NAMESPACE.equals(worldKey.getNamespace()) || hasFrozenPack(dimensionRoot))) {
+                && (IRIS_DIMENSION_NAMESPACE.equals(worldKey.getNamespace()) || hasGenerationStorage(dimensionRoot))) {
             return;
         }
         NamespacedKey messageKey = messageWorldKey(worldName, levelRoot.getName());
@@ -455,9 +469,10 @@ public final class IrisWorldGeneratorResolver {
                 + " type=<pack>; Iris registers them with Multiverse itself.");
     }
 
-    private static boolean hasFrozenPack(File dimensionRoot) {
-        Path packRoot = dimensionRoot.toPath().toAbsolutePath().normalize().resolve("iris").resolve("pack");
-        return Files.isDirectory(packRoot, LinkOption.NOFOLLOW_LINKS);
+    private static boolean hasGenerationStorage(File dimensionRoot) {
+        GenerationHistoryPaths paths = GenerationHistoryPaths.forDimension(dimensionRoot.toPath());
+        return Files.isDirectory(paths.generationRoot(), LinkOption.NOFOLLOW_LINKS)
+                || Files.isDirectory(paths.legacyPackRoot(), LinkOption.NOFOLLOW_LINKS);
     }
 
     private ChunkGenerator resolveFrozenWorldGenerator(String worldName, String id) {
@@ -475,7 +490,9 @@ public final class IrisWorldGeneratorResolver {
             throw new IllegalStateException("Frozen Iris world storage does not match the current platform layout for "
                     + worldKey + ".");
         }
-        File snapshotRoot = IrisWorldStorage.requireFrozenPackRoot(dimensionRoot);
+        long worldSeed = requireStoredWorldSeed(worldName, dimensionRoot);
+        GenerationHistory history = requireGenerationHistory(dimensionRoot, id, worldSeed);
+        File snapshotRoot = requireActivePack(history);
         try {
             requireSnapshotLoadable(snapshotRoot);
         } catch (BrokenPackException exception) {
@@ -487,18 +504,14 @@ public final class IrisWorldGeneratorResolver {
             throw exception;
         }
 
-        IrisDimension dimension = IrisData.get(snapshotRoot).getDimensionLoader().load(id, false);
-        if (dimension == null) {
-            throw new IllegalStateException("Frozen Iris pack snapshot at " + snapshotRoot
-                    + " does not contain dimension " + id + ".");
-        }
+        IrisDimension dimension = requireHistoricalDimension(history, snapshotRoot, id);
 
         Iris.debug("Assuming IrisDimension: " + dimension.getName());
 
         IrisWorld world = IrisWorld.builder()
                 .platformIdentity(worldKey.toString())
                 .name(worldName)
-                .seed(1337)
+                .seed(history.activeEpoch().worldSeed())
                 .worldFolder(dimensionRoot)
                 .minHeight(dimension.getMinHeight())
                 .maxHeight(dimension.getMaxHeight())
@@ -506,7 +519,133 @@ public final class IrisWorldGeneratorResolver {
 
         Iris.debug("Generator Config: " + world);
 
-        return new BukkitChunkGenerator(world, false, snapshotRoot, dimension.getLoadKey());
+        return new BukkitChunkGenerator(world, false, snapshotRoot, dimension.getLoadKey(), history);
+    }
+
+    private static GenerationHistory requireGenerationHistory(
+            File dimensionRoot,
+            String dimensionKey,
+            long worldSeed
+    ) {
+        Path root = dimensionRoot.toPath().toAbsolutePath().normalize();
+        try {
+            Optional<GenerationHistory> current = GenerationHistory.openIfPresent(root, worldSeed);
+            GenerationHistory history = current.isPresent()
+                    ? current.get()
+                    : adoptLegacyGenerationHistory(root, dimensionKey, worldSeed);
+            List<GenerationRegistryContract> retainedContracts = history.manifest()
+                    .epochs()
+                    .stream()
+                    .map(GenerationEpoch::registryContract)
+                    .toList();
+            history.requireRegistryDefinitions(
+                    GenerationRegistryContractFactory.captureRequiredDefinitions(retainedContracts)
+            );
+            return history;
+        } catch (IOException failure) {
+            throw new IllegalStateException("Iris generation history is unusable at " + root + ".", failure);
+        }
+    }
+
+    private static GenerationHistory adoptLegacyGenerationHistory(
+            Path dimensionRoot,
+            String dimensionKey,
+            long worldSeed
+    ) throws IOException {
+        Path legacyPack = GenerationHistoryPaths.forDimension(dimensionRoot).legacyPackRoot();
+        requireSnapshotLoadable(legacyPack.toFile());
+        String fingerprint = GenerationPackFingerprint.compute(
+                legacyPack,
+                GenerationPackFingerprint.CURRENT_VERSION
+        );
+        IrisData data = IrisData.openDatapackCompiler(legacyPack.toFile());
+        try {
+            IrisDimension dimension = data.getDimensionLoader().load(dimensionKey, false);
+            if (dimension == null) {
+                throw new IOException("Legacy Iris pack does not contain dimension " + dimensionKey + ".");
+            }
+            GenerationEpoch.DimensionContract dimensionContract = captureDimensionContract(data, dimension);
+            GenerationRegistryContract registryContract = GenerationRegistryContractFactory.create(
+                    data,
+                    dimension,
+                    fingerprint,
+                    GenerationRegistryContractFactory.CustomBiomeAliasPolicy.RETAIN_LEGACY_ALIASES
+            );
+            return GenerationHistory.adoptLegacyPack(
+                    dimensionRoot,
+                    fingerprint,
+                    worldSeed,
+                    dimensionContract,
+                    registryContract
+            );
+        } finally {
+            data.close();
+        }
+    }
+
+    private static IrisDimension requireHistoricalDimension(
+            GenerationHistory history,
+            File packRoot,
+            String dimensionKey
+    ) {
+        GenerationEpoch epoch = history.activeEpoch();
+        if (!epoch.dimensionContract().dimensionKey().equals(dimensionKey)) {
+            throw new IllegalStateException("Configured dimension " + dimensionKey
+                    + " does not match active generation history dimension "
+                    + epoch.dimensionContract().dimensionKey() + ".");
+        }
+        IrisData data = IrisData.get(packRoot);
+        IrisDimension dimension = data.getDimensionLoader().load(dimensionKey, false);
+        if (dimension == null) {
+            throw new IllegalStateException("Immutable Iris generation pack at " + packRoot
+                    + " does not contain dimension " + dimensionKey + ".");
+        }
+        GenerationEpoch.DimensionContract actualContract = captureDimensionContract(data, dimension);
+        if (!epoch.dimensionContract().equals(actualContract)) {
+            throw new IllegalStateException("Immutable Iris generation pack dimension contract changed at "
+                    + packRoot + ".");
+        }
+        return dimension;
+    }
+
+    private static GenerationEpoch.DimensionContract captureDimensionContract(
+            IrisData data,
+            IrisDimension dimension
+    ) {
+        String dimensionTypeKey = IrisPlatforms.get()
+                .registries()
+                .generationRegistry()
+                .dimensionTypeResourceKey(
+                        data.getDataFolder().getName(),
+                        dimension.getLoadKey(),
+                        dimension.getDimensionTypeKey()
+                );
+        return GenerationEpochContractFactory.create(
+                dimension,
+                dimension.getLoadKey(),
+                dimensionTypeKey
+        );
+    }
+
+    private static File requireActivePack(GenerationHistory history) {
+        try {
+            return history.activePackRoot().toFile();
+        } catch (IOException failure) {
+            throw new IllegalStateException("Active Iris generation pack is unusable.", failure);
+        }
+    }
+
+    private static long requireStoredWorldSeed(String worldName, File dimensionRoot) {
+        Long configuredSeed = IrisWorlds.readBukkitWorldSeed(worldName);
+        if (configuredSeed != null) {
+            return configuredSeed;
+        }
+        try {
+            return WorldReplacementSeed.readAuthoritativeSeed(dimensionRoot.toPath());
+        } catch (IOException failure) {
+            throw new IllegalStateException("Iris world " + worldName
+                    + " has no authoritative generation seed.", failure);
+        }
     }
 
     private record FreshValidation(

adapters/bukkit/plugin/src/main/java/art/arcane/iris/core/PendingWorldReplacementManager.java

@@ -164,24 +164,28 @@ public final class PendingWorldReplacementManager implements Listener {
             boolean configurationApplied = false;
             try {
                 Files.createDirectory(paths.stage());
-                IrisDimension installed = Iris.service(StudioSVC.class).installIntoWorld(
-                        requiredSender,
-                        requiredDimension,
-                        paths.stage().toFile()
-                );
-                if (installed == null) {
-                    throw new IOException("Iris could not stage the dimension pack.");
-                }
-                requireCompatibleEnvironment(target.slotKind(), installed.getEnvironment());
                 long effectiveSeed = WorldReplacementSeed.stageAuthoritativeSeed(
                         paths.target(),
                         paths.stage(),
                         seedSelection
                 );
+                IrisDimension installed = Iris.service(StudioSVC.class).installIntoWorld(
+                        requiredSender,
+                        requiredDimension,
+                        paths.stage().toFile(),
+                        effectiveSeed
+                );
+                if (installed == null) {
+                    throw new IOException("Iris could not stage the dimension pack.");
+                }
+                requireCompatibleEnvironment(target.slotKind(), installed.getEnvironment());
                 if (target.slotKind() == SlotKind.VANILLA_OVERWORLD) {
                     WorldReplacementEntryGuard.stage(target.levelRoot(), paths.stage(), transactionId);
                 }
-                File stagedPack = paths.stage().resolve("iris/pack").toFile();
+                File stagedPack = IrisWorldStorage.requireActiveGenerationPackRoot(
+                        paths.stage().toFile(),
+                        effectiveSeed
+                );
                 IrisWorldGeneratorResolver.requireSnapshotLoadable(stagedPack);
                 String packFingerprint = WorldReplacementFilesystem.fingerprintPack(stagedPack.toPath());
                 transaction = new Transaction(
@@ -806,7 +810,10 @@ public final class PendingWorldReplacementManager implements Listener {
             validatePublishedWorldRuntime(runtimeState, transaction, target.slotKind());
             ReplacementPaths paths = WorldReplacementFilesystem.paths(target, transaction.id());
             String fingerprint = WorldReplacementFilesystem.fingerprintPack(
-                    paths.target().resolve("iris/pack"));
+                    IrisWorldStorage.requireActiveGenerationPackRoot(
+                            paths.target().toFile(),
+                            transaction.seed()
+                    ).toPath());
             if (!transaction.packFingerprint().equals(fingerprint)) {
                 throw new IOException("The replacement pack changed before runtime verification.");
             }

adapters/bukkit/plugin/src/main/java/art/arcane/iris/core/commands/CommandDeveloper.java

@@ -176,7 +176,7 @@ public class CommandDeveloper implements DirectorExecutor {
         return z ^ (z >>> 31);
     }
 
-    @Director(description = "Update the pack of a world (UNSAFE!)", descriptionKey = "iris.director.commanddeveloper.director.update_pack_world_unsafe", name = "update-world", aliases = "^world")
+    @Director(description = "Stage a world generation update", descriptionKey = "iris.director.commanddeveloper.director.stage_world_generation_update", name = "update-world", aliases = "^world")
     public void updateWorld(
             @Param(description = "The world to update", descriptionKey = "iris.director.commanddeveloper.param.world_update", contextual = true, contextualOverride = true)
             World world,
@@ -202,7 +202,7 @@ public class CommandDeveloper implements DirectorExecutor {
                 LifecycleOperationCoordinator.OperationKind.PACK_PUBLISH,
                 pack.getLoadKey()
         )) {
-            Iris.service(StudioSVC.class).replaceIntoWorld(sender(), pack, folder);
+            Iris.service(StudioSVC.class).replaceIntoWorld(sender(), pack, folder, world.getSeed());
         } catch (LifecycleOperationCoordinator.BusyException e) {
             sender().sendMessage(C.YELLOW + e.getMessage());
         }

adapters/bukkit/plugin/src/main/java/art/arcane/iris/core/commands/CommandFind.java

@@ -28,8 +28,8 @@ import art.arcane.iris.engine.framework.Engine;
 import art.arcane.iris.engine.framework.IrisStructureLocator;
 import art.arcane.iris.engine.framework.NativeStructureGenerationPolicy;
 import art.arcane.iris.engine.framework.StructureReachability;
+import art.arcane.iris.engine.history.GenerationSemanticQueries;
 import art.arcane.iris.engine.hydrology.HydrologyFeatureQuery;
-import art.arcane.iris.engine.hydrology.HydrologyFeatureRef;
 import art.arcane.iris.engine.hydrology.runtime.IrisHydrologyRuntime;
 import art.arcane.iris.engine.object.IrisBiome;
 import art.arcane.iris.engine.object.IrisNativeStructureDecision;
@@ -41,8 +41,10 @@ import art.arcane.iris.spi.IrisPlatforms;
 import art.arcane.iris.spi.PlatformStructureHooks;
 import art.arcane.iris.util.common.director.DirectorExecutor;
 import art.arcane.iris.util.common.director.specialhandlers.HydrologyTypeHandler;
-import art.arcane.iris.util.common.director.specialhandlers.ObjectHandler;
+import art.arcane.iris.engine.history.GenerationFindCatalog;
+import art.arcane.iris.util.common.director.specialhandlers.LocatableObjectHandler;
 import art.arcane.iris.util.common.director.specialhandlers.ReachableBiomeHandler;
+import art.arcane.iris.util.common.director.specialhandlers.ReachableRegionHandler;
 import art.arcane.iris.util.common.director.specialhandlers.StructureHandler;
 import art.arcane.iris.util.common.format.C;
 import art.arcane.iris.util.common.plugin.VolmitSender;
@@ -90,7 +92,7 @@ public class CommandFind implements DirectorExecutor {
 
     @Director(description = "Find a region", descriptionKey = "iris.director.commandfind.director.find_region")
     public void region(
-            @Param(description = "The region to look for", descriptionKey = "iris.director.commandfind.param.region_look")
+            @Param(description = "The region to look for", descriptionKey = "iris.director.commandfind.param.region_look", customHandler = ReachableRegionHandler.class)
             IrisRegion region,
             @Param(description = "Should you be teleported", descriptionKey = "iris.director.commandfind.param.should_you_be_teleported_2", defaultValue = "true")
             boolean teleport
@@ -138,10 +140,6 @@ public class CommandFind implements DirectorExecutor {
             return;
         }
         IrisHydrologyRuntime runtime = activeEngine.getComplex().getHydrologyRuntime();
-        if (runtime == null) {
-            commandSender.sendMessage(C.YELLOW + "Hydrology is not active in this world.");
-            return;
-        }
         HydrologyFeatureQuery query;
         try {
             query = HydrologyFeatureQuery.parse(type);
@@ -150,15 +148,19 @@ public class CommandFind implements DirectorExecutor {
             return;
         }
         Location origin = target.getLocation();
-        int requestedDistance = Math.min(8192, runtime.settings().routing().tileSize() * 15);
-        int maximumDistance = runtime.maximumFeatureSearchDistance(
-                origin.getBlockX(), origin.getBlockZ(), requestedDistance);
+        int requestedDistance = runtime == null
+                ? 8192
+                : Math.min(8192, runtime.settings().routing().tileSize() * 15);
+        int maximumDistance = runtime == null
+                ? requestedDistance
+                : runtime.maximumFeatureSearchDistance(
+                        origin.getBlockX(), origin.getBlockZ(), requestedDistance);
         commandSender.sendMessage(C.GRAY + "Searching accepted hydrology plans for " + type + "...");
         J.a(() -> {
             try {
-                HydrologyFeatureRef feature = runtime.nearestFeature(
-                        query.types(),
-                        query.profileKey(),
+                GenerationSemanticQueries.RiverResult feature = GenerationSemanticQueries.nearestRiver(
+                        activeEngine,
+                        query,
                         origin.getBlockX(),
                         origin.getBlockZ(),
                         maximumDistance,
@@ -171,15 +173,14 @@ public class CommandFind implements DirectorExecutor {
                                     + maximumDistance + " blocks.");
                     return;
                 }
-                int worldY = feature.y() + activeEngine.getDimension().getMinHeight();
                 String label = type + " hydrology feature";
                 if (!teleport) {
                     sendStructureMessage(target, commandSender,
-                            C.GREEN + "Found " + label + " at " + feature.x() + ", " + worldY + ", " + feature.z() + ".");
+                            C.GREEN + "Found " + label + " at " + feature.x() + ", " + feature.y() + ", " + feature.z() + ".");
                     return;
                 }
                 Location destination = new Location(
-                        target.getWorld(), feature.x(), worldY, feature.z());
+                        target.getWorld(), feature.x(), feature.y(), feature.z());
                 prepareStructureTeleport(
                         target, target.getWorld(), commandSender, label, destination, true);
             } catch (Throwable error) {
@@ -233,6 +234,12 @@ public class CommandFind implements DirectorExecutor {
                 registered, decision, nativePlacement, locatableNativePlacement,
                 locatableEditablePlacement, nativeGenerationEnabled, reachable);
 
+        if (route != StructureLookupRoute.NATIVE && route != StructureLookupRoute.IRIS
+                && GenerationFindCatalog.hasRetainedStructurePlacement(e, structureKey)) {
+            locateIrisStructure(e, structureKey, commandSender);
+            return;
+        }
+
         if (route == StructureLookupRoute.UNKNOWN) {
             commandSender.sendMessage(IrisLanguage.text(BukkitCommandMessages.COMMAND_FIND_UNKNOWN_STRUCTURE, MessageArgument.untrusted("structureKey", structureKey)));
             return;
@@ -672,7 +679,7 @@ public class CommandFind implements DirectorExecutor {
         J.a(() -> {
             try {
                 IrisStructureLocator.LocateResult result =
-                        IrisStructureLocator.locate(engine, structure, blockX, blockZ, 1024);
+                        GenerationSemanticQueries.nearestStructure(engine, structure, blockX, blockZ, 1024);
                 if (result.status() == IrisStructureLocator.LocateStatus.SEARCH_LIMIT_REACHED) {
                     sendStructureMessage(target, commandSender,
                             C.YELLOW + "Unable to locate " + structure
@@ -697,7 +704,7 @@ public class CommandFind implements DirectorExecutor {
 
     @Director(description = "Find an object", descriptionKey = "iris.director.commandfind.director.find_object")
     public void object(
-            @Param(description = "The object to look for", descriptionKey = "iris.director.commandfind.param.object_look", customHandler = ObjectHandler.class)
+            @Param(description = "The object to look for", descriptionKey = "iris.director.commandfind.param.object_look", customHandler = LocatableObjectHandler.class)
             String object,
             @Param(description = "Should you be teleported", descriptionKey = "iris.director.commandfind.param.should_you_be_teleported_4", defaultValue = "true")
             boolean teleport
@@ -721,7 +728,7 @@ public class CommandFind implements DirectorExecutor {
             }
         }
 
-        if (e.hasObjectPlacement(object)) {
+        if (GenerationFindCatalog.hasObjectPlacement(e, object)) {
             EngineBukkitOps.gotoObject(e, object, player(), teleport);
             return;
         }

adapters/bukkit/plugin/src/main/java/art/arcane/iris/core/service/CommandSVC.java

@@ -279,12 +279,14 @@ public class CommandSVC implements IrisService, CommandExecutor, TabCompleter, D
 
     private DirectorExecutionResult runDirector(CommandSender sender, String label, String[] args) {
         dispatchSenders.set(sender);
+        DirectorContext.touch(new VolmitSender(sender));
         try (LanguageAudience.Scope audience = LanguageAudience.open(sender instanceof Player player ? player.getUniqueId() : null)) {
             return getDirector().execute(new DirectorInvocation(new BukkitDirectorSender(sender), label, Arrays.asList(args)));
         } catch (Throwable e) {
             Iris.warn("Director command execution failed: " + e.getClass().getSimpleName() + " " + e.getMessage());
             return DirectorExecutionResult.notHandled();
         } finally {
+            DirectorContext.remove();
             dispatchSenders.remove();
         }
     }

adapters/bukkit/plugin/src/test/java/art/arcane/iris/IrisShutdownOrderingTest.java

@@ -9,6 +9,40 @@ import static org.junit.Assert.assertFalse;
 import static org.junit.Assert.assertTrue;
 
 public class IrisShutdownOrderingTest {
+    @Test
+    public void serverStopHoldsThePluginLoaderUntilTerminalCleanupCompletes() throws Exception {
+        String source = Files.readString(Path.of(System.getProperty("iris.startupSource")));
+        String quiesce = section(source, "private void quiesceRuntimeForServerShutdown", "private void startPostStopFinisher");
+        String cleanup = section(source, "private void finishTerminalCleanup()", "private void drainWorldGenerators");
+        String teardown = section(source, "private void teardownRuntime", "private void quiesceRuntimeForServerShutdown");
+        String deferred = section(source, "private void finishDeferredRuntimeTeardown", "private void finishTerminalCleanup");
+
+        assertOrdered(quiesce, "serverStopTeardownDeferred.set(true)", "deferPluginClassLoaderClose()",
+                "jigsawStudioService.quiesceForServerShutdown()");
+        assertOrdered(cleanup, "runPostShutdown()", "hasActiveShutdownResources()", "IrisPlatforms.unbind()",
+                "runtimeTeardownFailed.get()", "releasePluginClassLoaderClose()");
+        assertTrue(cleanup.contains("!MultiBurst.burst.isTerminated() || !MultiBurst.ioBurst.isTerminated()"));
+        assertTrue(cleanup.contains("preservation.hasActiveResources()"));
+        assertOrdered(teardown, "drainWorldGenerators(reason, timeoutSeconds)", "!generatorDrainCompleted",
+                "return;", "service.onDisable()");
+        assertOrdered(deferred, "teardownRuntime(reason, timeoutSeconds)", "!generatorDrainCompleted",
+                "SHUTDOWN_ERRORS.println", "return;", "finishTerminalCleanup()");
+    }
+
+    @Test
+    public void deferredShutdownErrorsBypassClosedLoggingServices() throws Exception {
+        String source = Files.readString(Path.of(System.getProperty("iris.startupSource")));
+        String throwableReport = section(source, "public static void reportError(Throwable e)",
+                "public static void reportError(String context, Throwable e)");
+        String contextualReport = section(source, "public static void reportError(String context, Throwable e)",
+                "public static void dump()");
+
+        assertOrdered(throwableReport, "serverStopTeardownDeferred.get()",
+                "e.printStackTrace(SHUTDOWN_ERRORS)", "boolean debug = false");
+        assertOrdered(contextualReport, "serverStopTeardownDeferred.get()",
+                "SHUTDOWN_ERRORS.println(", "error.printStackTrace(SHUTDOWN_ERRORS)", "Iris.error(message)");
+    }
+
     @Test
     public void drainWorldGenerators_closesGeneratorsWithoutEagerMantleSave() throws Exception {
         String source = Files.readString(Path.of(System.getProperty("iris.startupSource")));
@@ -18,6 +52,22 @@ public class IrisShutdownOrderingTest {
         assertFalse("Shutdown must not close Mantle plates before generation drains", drain.contains("saveAllNow()"));
     }
 
+    @Test
+    public void shutdownBoundaryIsPreparedBeforeHookRegistrationAndDoesNotUseClosedBindings() throws Exception {
+        String source = Files.readString(Path.of(System.getProperty("iris.startupSource")));
+        String registration = section(source, "public void addShutdownHook()", "public void removeShutdownHook()");
+        String boundary = section(source, "private boolean awaitServerShutdownBoundary()",
+                "private void finishDeferredRuntimeTeardown");
+
+        assertOrdered(registration, "createServerShutdownBoundary()", "new Thread(this::runShutdownHook",
+                "Runtime.getRuntime().addShutdownHook");
+        assertTrue(boundary.contains("boundary.await("));
+        assertFalse(boundary.contains("INMS.get()"));
+        assertFalse(boundary.contains("Iris.reportError"));
+        assertTrue(source.contains("new FileOutputStream(FileDescriptor.err)"));
+        assertOrdered(boundary, "SHUTDOWN_ERRORS.println(", "e.printStackTrace(SHUTDOWN_ERRORS)", "return false;");
+    }
+
     @Test
     public void serverStop_defersRuntimeTeardownUntilPaperShutdownBoundary() throws Exception {
         String source = Files.readString(Path.of(System.getProperty("iris.startupSource")));
@@ -43,6 +93,7 @@ public class IrisShutdownOrderingTest {
                 "finishDeferredRuntimeTeardown(\"startup-boundary-restart-hook\", 30L)",
                 "return;",
                 "awaitServerShutdownBoundary()",
+                "SHUTDOWN_ERRORS.println",
                 "finishDeferredRuntimeTeardown(\"shutdown-hook\", 30L)");
         assertOrdered(finisher,
                 "finisher.setDaemon(false)",
@@ -85,8 +136,8 @@ public class IrisShutdownOrderingTest {
         assertOrdered(teardown,
                 "drainWorldGenerators(reason, timeoutSeconds)",
                 "service.onDisable()",
-                "MultiBurst.burst::close",
-                "MultiBurst.ioBurst::close");
+                "MultiBurst.burst.close()",
+                "MultiBurst.ioBurst.close()");
         assertTrue("Engine service must retain its generator close behind deferred service teardown",
                 engineDisable.contains("startClose("));
         assertTrue("Studio service must retain its generator close behind deferred service teardown",

adapters/bukkit/plugin/src/test/java/art/arcane/iris/core/IrisWorldGeneratorResolverTest.java

@@ -195,7 +195,7 @@ public class IrisWorldGeneratorResolverTest {
     }
 
     @Test
-    public void configuredWorldResolutionUsesOnlyFrozenWorldLocalSnapshot() throws Exception {
+    public void configuredWorldResolutionUsesOnlyActiveImmutableGenerationPack() throws Exception {
         String source = Files.readString(Path.of(
                 "src/main/java/art/arcane/iris/core/IrisWorldGeneratorResolver.java")).replace("\r\n", "\n");
         int resolverStart = source.indexOf("private ChunkGenerator resolveFrozenWorldGenerator(");
@@ -208,26 +208,32 @@ public class IrisWorldGeneratorResolverTest {
                 "Frozen Iris world storage does not match the current platform layout",
                 currentPlatformRoot
         );
-        int snapshotRoot = resolver.indexOf("IrisWorldStorage.requireFrozenPackRoot(dimensionRoot)");
+        int history = resolver.indexOf("requireGenerationHistory(dimensionRoot, id, worldSeed)");
+        int snapshotRoot = resolver.indexOf("requireActivePack(history)", history);
         int validation = resolver.indexOf("requireSnapshotLoadable(snapshotRoot)");
-        int exactLoad = resolver.indexOf(
-                "IrisData.get(snapshotRoot).getDimensionLoader().load(id, false)"
-        );
+        int exactLoad = resolver.indexOf("requireHistoricalDimension(history, snapshotRoot, id)");
         int canonicalIdentity = resolver.indexOf(".platformIdentity(worldKey.toString())");
+        int historicalSeed = resolver.indexOf(".seed(history.activeEpoch().worldSeed())");
         int resolvedStorage = resolver.indexOf(".worldFolder(dimensionRoot)");
 
         assertTrue(dimensionRoot >= 0);
         assertTrue(currentPlatformRoot > dimensionRoot);
         assertTrue(layoutRefusal > currentPlatformRoot);
-        assertTrue(snapshotRoot > layoutRefusal);
+        assertTrue(history > layoutRefusal);
+        assertTrue(snapshotRoot > history);
         assertTrue(validation > snapshotRoot);
         assertTrue(exactLoad > validation);
         assertTrue(canonicalIdentity > exactLoad);
-        assertTrue(resolvedStorage > canonicalIdentity);
+        assertTrue(historicalSeed > canonicalIdentity);
+        assertTrue(resolvedStorage > historicalSeed);
         assertFalse(resolver.contains("loadDimension("));
         assertFalse(resolver.contains("loadAnyDimension("));
         assertFalse(resolver.contains("replaceIntoWorld("));
         assertFalse(resolver.contains("installIntoWorld("));
+        assertFalse(resolver.contains(".seed(1337)"));
+        assertTrue(resolver.contains("GenerationHistory.openIfPresent(root, worldSeed)"));
+        assertTrue(resolver.contains("GenerationHistory.adoptLegacyPack("));
+        assertTrue(resolver.contains("GenerationRegistryContractFactory.captureRequiredDefinitions("));
     }
 
     @Test

adapters/bukkit/plugin/src/test/java/art/arcane/iris/core/commands/CommandDeveloperGenerationHistoryTest.java

@@ -0,0 +1,26 @@
+package art.arcane.iris.core.commands;
+
+import org.junit.Test;
+
+import java.nio.file.Files;
+import java.nio.file.Path;
+
+import static org.junit.Assert.assertFalse;
+import static org.junit.Assert.assertTrue;
+
+public final class CommandDeveloperGenerationHistoryTest {
+    @Test
+    public void updateWorldStagesThePackWithTheLiveWorldSeed() throws Exception {
+        String source = Files.readString(Path.of(
+                "src/main/java/art/arcane/iris/core/commands/CommandDeveloper.java"
+        )).replace("\r\n", "\n");
+        int updateStart = source.indexOf("public void updateWorld(");
+        int updateEnd = source.indexOf("@Director(description = \"Test\"", updateStart);
+        String update = source.substring(updateStart, updateEnd);
+
+        assertTrue(update.contains(
+                "replaceIntoWorld(sender(), pack, folder, world.getSeed())"
+        ));
+        assertFalse(update.contains("iris/pack"));
+    }
+}

adapters/bukkit/plugin/src/test/java/art/arcane/iris/core/commands/CommandFindRiverContractTest.java

@@ -0,0 +1,26 @@
+package art.arcane.iris.core.commands;
+
+import org.junit.Test;
+
+import java.io.IOException;
+import java.nio.file.Files;
+import java.nio.file.Path;
+
+import static org.junit.Assert.assertFalse;
+import static org.junit.Assert.assertTrue;
+
+public final class CommandFindRiverContractTest {
+    @Test
+    public void riverLookupMergesRecordedAndEligibleActiveFeatures() throws IOException {
+        String source = Files.readString(Path.of(System.getProperty("iris.commandFindSource")));
+        int methodStart = source.indexOf("public void river(");
+        int methodEnd = source.indexOf("public void structure(", methodStart);
+        String method = source.substring(methodStart, methodEnd);
+
+        assertTrue(method.contains("GenerationSemanticQueries.nearestRiver("));
+        assertTrue(method.contains("runtime == null"));
+        assertTrue(method.contains("feature.y()"));
+        assertFalse(method.contains("runtime.nearestFeature("));
+        assertFalse(method.contains("feature.y() + activeEngine.getDimension().getMinHeight()"));
+    }
+}

adapters/bukkit/plugin/src/test/java/art/arcane/iris/core/commands/CommandFindStructureHistoryContractTest.java

@@ -0,0 +1,27 @@
+package art.arcane.iris.core.commands;
+
+import org.junit.Test;
+
+import java.io.IOException;
+import java.nio.file.Files;
+import java.nio.file.Path;
+
+import static org.junit.Assert.assertFalse;
+import static org.junit.Assert.assertTrue;
+
+public final class CommandFindStructureHistoryContractTest {
+    @Test
+    public void admitsRetainedStructuresBeforeActiveOnlyRejectionsAndUsesSemanticSearch() throws IOException {
+        String source = Files.readString(Path.of(System.getProperty("iris.commandFindSource")));
+        int structureStart = source.indexOf("public void structure(");
+        int retainedAdmission = source.indexOf("GenerationFindCatalog.hasRetainedStructurePlacement(e, structureKey)", structureStart);
+        int unknownRejection = source.indexOf("if (route == StructureLookupRoute.UNKNOWN)", structureStart);
+        assertTrue(retainedAdmission > structureStart && retainedAdmission < unknownRejection);
+
+        int locateStart = source.indexOf("private void locateIrisStructure(");
+        int locateEnd = source.indexOf("public void object(", locateStart);
+        String locate = source.substring(locateStart, locateEnd);
+        assertTrue(locate.contains("GenerationSemanticQueries.nearestStructure("));
+        assertFalse(locate.contains("IrisStructureLocator.locate("));
+    }
+}

adapters/bukkit/plugin/src/test/java/art/arcane/iris/core/runtime/BukkitEngineLifecycleContractTest.java

@@ -30,7 +30,7 @@ public class BukkitEngineLifecycleContractTest {
         String baseHeight = method(source, "public int getBaseHeight(");
         assertTrue(baseHeight.contains("currentEngine.acquireGenerationLease(\"bukkit_base_height\")"));
         assertTrue(baseHeight.contains("IrisContext.open(currentEngine, lease.sessionId(), null)"));
-        assertTrue(baseHeight.contains("catch (GenerationSessionException e)"));
+        assertTrue(baseHeight.contains("catch (GenerationSessionException | IOException e)"));
 
         String generation = method(source, "public void generateNoise(");
         assertTrue(generation.contains("throw new IllegalStateException"));

adapters/bukkit/plugin/src/test/java/art/arcane/iris/core/service/CommandSVCFindParsingTest.java

@@ -0,0 +1,155 @@
+package art.arcane.iris.core.service;
+
+import art.arcane.iris.Iris;
+import art.arcane.iris.core.commands.CommandIris;
+import art.arcane.iris.core.tools.IrisToolbelt;
+import art.arcane.iris.engine.framework.Engine;
+import art.arcane.iris.engine.history.GenerationFindCatalog;
+import art.arcane.iris.engine.object.IrisBiome;
+import art.arcane.iris.engine.object.IrisRegion;
+import art.arcane.iris.engine.platform.EngineBukkitOps;
+import art.arcane.iris.engine.platform.PlatformChunkGenerator;
+import art.arcane.iris.util.common.director.DirectorContext;
+import art.arcane.volmlib.util.collection.KList;
+import art.arcane.volmlib.util.director.DirectorEngineOptions;
+import art.arcane.volmlib.util.director.compat.DirectorEngineFactory;
+import art.arcane.volmlib.util.director.runtime.DirectorExecutionDispatcher;
+import art.arcane.volmlib.util.director.runtime.DirectorExecutionResult;
+import art.arcane.volmlib.util.director.runtime.DirectorRuntimeEngine;
+import art.arcane.volmlib.util.plugin.ComponentMessenger;
+import org.bukkit.World;
+import org.bukkit.command.CommandSender;
+import org.bukkit.entity.Player;
+import org.junit.Test;
+import org.mockito.MockedStatic;
+
+import java.lang.reflect.Method;
+import java.util.ArrayList;
+import java.util.List;
+import java.util.UUID;
+
+import static org.junit.Assert.assertEquals;
+import static org.junit.Assert.assertFalse;
+import static org.junit.Assert.assertNull;
+import static org.junit.Assert.assertSame;
+import static org.junit.Assert.assertTrue;
+import static org.mockito.ArgumentMatchers.eq;
+import static org.mockito.ArgumentMatchers.same;
+import static org.mockito.Mockito.mock;
+import static org.mockito.Mockito.mockStatic;
+import static org.mockito.Mockito.times;
+import static org.mockito.Mockito.when;
+
+public class CommandSVCFindParsingTest {
+    @Test
+    public void registeredBiomeHandlerResolvesActiveThenRemovedNamesDuringParsing() throws Exception {
+        Fixture fixture = new Fixture();
+        TestCommandService service = new TestCommandService(DirectorExecutionDispatcher.IMMEDIATE);
+        IrisBiome plateau = biome("plateau");
+        IrisBiome meadow = biome("meadow");
+        try (MockedStatic<IrisToolbelt> toolbelt = mockStatic(IrisToolbelt.class);
+             MockedStatic<GenerationFindCatalog> catalog = mockStatic(GenerationFindCatalog.class);
+             MockedStatic<EngineBukkitOps> operations = mockStatic(EngineBukkitOps.class)) {
+            toolbelt.when(() -> IrisToolbelt.access(fixture.world)).thenReturn(fixture.generator);
+            catalog.when(() -> GenerationFindCatalog.biomes(fixture.engine))
+                    .thenReturn(new KList<>(plateau, meadow));
+
+            assertTrue(execute(service, fixture.player, "biome", "biome=plateau").isSuccess());
+            assertNull(DirectorContext.get());
+            assertTrue(execute(service, fixture.player, "biome", "biome=meadow").isSuccess());
+            assertNull(DirectorContext.get());
+
+            operations.verify(() -> EngineBukkitOps.gotoBiome(same(fixture.engine), same(plateau), same(fixture.player), eq(true)));
+            operations.verify(() -> EngineBukkitOps.gotoBiome(same(fixture.engine), same(meadow), same(fixture.player), eq(true)));
+            catalog.verify(() -> GenerationFindCatalog.biomes(fixture.engine), times(2));
+            catalog.verifyNoMoreInteractions();
+        }
+    }
+
+    @Test
+    public void registeredHistoricalHandlersParseBeforeDeferredInvocationAndClearFailedContext() throws Exception {
+        Fixture fixture = new Fixture();
+        List<Runnable> queued = new ArrayList<>();
+        TestCommandService service = new TestCommandService((mode, action) -> queued.add(action));
+        IrisBiome meadow = biome("meadow");
+        IrisRegion oldRegion = new IrisRegion();
+        oldRegion.setLoadKey("old-region");
+        try (MockedStatic<IrisToolbelt> toolbelt = mockStatic(IrisToolbelt.class);
+             MockedStatic<GenerationFindCatalog> catalog = mockStatic(GenerationFindCatalog.class);
+             MockedStatic<EngineBukkitOps> operations = mockStatic(EngineBukkitOps.class);
+             MockedStatic<ComponentMessenger> messages = mockStatic(ComponentMessenger.class)) {
+            toolbelt.when(() -> IrisToolbelt.access(fixture.world)).thenReturn(fixture.generator);
+            catalog.when(() -> GenerationFindCatalog.biomes(fixture.engine)).thenReturn(new KList<>(meadow));
+            catalog.when(() -> GenerationFindCatalog.regions(fixture.engine)).thenReturn(new KList<>(oldRegion));
+            catalog.when(() -> GenerationFindCatalog.objectKeys(fixture.engine)).thenReturn(new KList<>("old-tree"));
+            operations.when(() -> EngineBukkitOps.gotoBiome(fixture.engine, meadow, fixture.player, true))
+                    .thenAnswer(invocation -> {
+                        assertSame(fixture.player, DirectorContext.get().player());
+                        return null;
+                    });
+
+            assertTrue(execute(service, fixture.player, "biome", "biome=meadow").isSuccess());
+            assertTrue(execute(service, fixture.player, "region", "region=old-region").isSuccess());
+            assertTrue(execute(service, fixture.player, "object", "object=old-tree").isSuccess());
+            assertEquals(3, queued.size());
+            assertNull(DirectorContext.get());
+
+            queued.getFirst().run();
+            assertNull(DirectorContext.get());
+            operations.verify(() -> EngineBukkitOps.gotoBiome(fixture.engine, meadow, fixture.player, true));
+
+            DirectorExecutionResult rejected = execute(service, fixture.player, "biome", "biome=authoring-only");
+            assertFalse(rejected.isSuccess());
+            assertTrue(rejected.getMessage().contains("Cannot convert"));
+            assertEquals(3, queued.size());
+            assertNull(DirectorContext.get());
+            catalog.verify(() -> GenerationFindCatalog.regions(fixture.engine));
+            catalog.verify(() -> GenerationFindCatalog.objectKeys(fixture.engine));
+        }
+    }
+
+    private static DirectorExecutionResult execute(CommandSVC service, Player player, String command, String argument)
+            throws Exception {
+        Method run = CommandSVC.class.getDeclaredMethod("runDirector", CommandSender.class, String.class, String[].class);
+        run.setAccessible(true);
+        return (DirectorExecutionResult) run.invoke(service, player, "iris",
+                new String[]{"find", command, argument, "teleport=true"});
+    }
+
+    private static IrisBiome biome(String key) {
+        IrisBiome biome = new IrisBiome();
+        biome.setLoadKey(key);
+        return biome;
+    }
+
+    private static final class Fixture {
+        private final Engine engine = mock(Engine.class);
+        private final Player player = mock(Player.class);
+        private final World world = mock(World.class);
+        private final PlatformChunkGenerator generator = mock(PlatformChunkGenerator.class);
+
+        private Fixture() {
+            when(player.getWorld()).thenReturn(world);
+            when(player.getUniqueId()).thenReturn(UUID.fromString("00000000-0000-0000-0000-000000000001"));
+            when(generator.getEngine()).thenReturn(engine);
+        }
+    }
+
+    private static final class TestCommandService extends CommandSVC {
+        private final DirectorRuntimeEngine director;
+
+        private TestCommandService(DirectorExecutionDispatcher dispatcher) {
+            try (MockedStatic<Iris> iris = mockStatic(Iris.class)) {
+                director = DirectorEngineFactory.create(new CommandIris(), DirectorEngineOptions.builder()
+                        .dispatcher(dispatcher)
+                        .invocationHook(this)
+                        .build());
+            }
+        }
+
+        @Override
+        public DirectorRuntimeEngine getDirector() {
+            return director;
+        }
+    }
+}

adapters/fabric/build.gradle

@@ -26,6 +26,8 @@ plugins {
     alias(libs.plugins.shadow)
 }
 
+apply from: file('../../gradle/modded-generation-kernel-seals.gradle')
+
 Properties rootProperties = new Properties()
 file('../../gradle.properties').withInputStream { InputStream stream -> rootProperties.load(stream) }
 String irisVersion = providers.gradleProperty('irisVersion').getOrElse(rootProperties.getProperty('irisVersion', '4.1.0-26.2'))
@@ -163,6 +165,7 @@ dependencies {
         "art.arcane:core:${irisVersion}".toString(),
         "art.arcane:spi:${irisVersion}".toString(),
         libs.paralithic,
+        libs.asm,
         libs.lru,
         libs.caffeine,
         libs.dom4j,

adapters/forge/build.gradle

@@ -26,6 +26,8 @@ plugins {
     alias(libs.plugins.shadow)
 }
 
+apply from: file('../../gradle/modded-generation-kernel-seals.gradle')
+
 Properties rootProperties = new Properties()
 file('../../gradle.properties').withInputStream { InputStream stream -> rootProperties.load(stream) }
 String irisVersion = providers.gradleProperty('irisVersion').getOrElse(rootProperties.getProperty('irisVersion', '4.1.0-26.2'))
@@ -162,6 +164,7 @@ dependencies {
         "art.arcane:core:${irisVersion}".toString(),
         "art.arcane:spi:${irisVersion}".toString(),
         libs.paralithic,
+        libs.asm,
         libs.lru,
         libs.caffeine,
         libs.dom4j,

adapters/minecraft-common/src/main/java/art/arcane/iris/nativegen/NativeStructureReferenceRepair.java

@@ -1,9 +1,11 @@
 package art.arcane.iris.nativegen;
 
+import art.arcane.iris.engine.IrisEngine;
 import art.arcane.iris.engine.framework.Engine;
 import art.arcane.iris.engine.framework.NativeStructureGenerationPolicy;
 import art.arcane.iris.engine.framework.NativeStructureOwnershipRecord;
 import art.arcane.iris.engine.framework.NativeStructureOwnershipStore;
+import art.arcane.iris.engine.history.GenerationHistoryRuntimeRouter;
 import art.arcane.iris.engine.object.IrisNativeStructureDecision;
 import art.arcane.iris.spi.IrisLogging;
 import it.unimi.dsi.fastutil.longs.LongOpenHashSet;
@@ -23,6 +25,7 @@ import net.minecraft.world.level.levelgen.structure.Structure;
 import net.minecraft.world.level.levelgen.structure.StructureStart;
 
 import java.util.ArrayList;
+import java.io.IOException;
 import java.util.HashMap;
 import java.util.List;
 import java.util.Map;
@@ -48,14 +51,17 @@ public final class NativeStructureReferenceRepair {
              originChunkX <= target.x() + REFERENCE_DISTANCE_CHUNKS; originChunkX++) {
             for (int originChunkZ = target.z() - REFERENCE_DISTANCE_CHUNKS;
                  originChunkZ <= target.z() + REFERENCE_DISTANCE_CHUNKS; originChunkZ++) {
-                ChunkAccess originChunk = level.getChunk(
-                        originChunkX, originChunkZ, ChunkStatus.STRUCTURE_STARTS);
-                for (Map.Entry<Structure, StructureStart> entry : originChunk.getAllStarts().entrySet()) {
-                    ScannedStart start = scanStart(
-                            engine, serverLevel, structureManager, targetChunk, registry,
-                            originChunk, entry.getKey(), entry.getValue());
-                    if (start != null && isTargetRelevant(engine, targetChunk, start)) {
-                        starts.add(start);
+                try (GenerationHistoryRuntimeRouter.CoordinateScope ignored =
+                             openOriginRuntimeScope(engine, originChunkX, originChunkZ)) {
+                    ChunkAccess originChunk = level.getChunk(
+                            originChunkX, originChunkZ, ChunkStatus.STRUCTURE_STARTS);
+                    for (Map.Entry<Structure, StructureStart> entry : originChunk.getAllStarts().entrySet()) {
+                        ScannedStart start = scanStart(
+                                engine, serverLevel, structureManager, targetChunk, registry,
+                                originChunk, entry.getKey(), entry.getValue());
+                        if (start != null && isTargetRelevant(engine, targetChunk, start)) {
+                            starts.add(start);
+                        }
                     }
                 }
             }
@@ -75,6 +81,22 @@ public final class NativeStructureReferenceRepair {
         }
     }
 
+    private static GenerationHistoryRuntimeRouter.CoordinateScope openOriginRuntimeScope(
+            Engine engine,
+            int chunkX,
+            int chunkZ
+    ) {
+        if (!(engine instanceof IrisEngine irisEngine)) {
+            return null;
+        }
+        try {
+            return irisEngine.openGenerationHistoryCoordinateScope(chunkX << 4, chunkZ << 4);
+        } catch (IOException failure) {
+            throw new IllegalStateException("Unable to resolve native structure references for origin "
+                    + chunkX + "," + chunkZ + " through generation history.", failure);
+        }
+    }
+
     private static boolean isTargetRelevant(
             Engine engine, ChunkAccess targetChunk, ScannedStart scanned) {
         StructureStart start = scanned.start();

adapters/minecraft-common/src/main/java/art/arcane/iris/nativegen/NativeStructureVolumeIndex.java

@@ -1,11 +1,13 @@
 package art.arcane.iris.nativegen;
 
+import art.arcane.iris.engine.IrisEngine;
 import art.arcane.iris.engine.framework.Engine;
 import art.arcane.iris.engine.framework.NativeStructureGenerationPolicy;
 import art.arcane.iris.engine.framework.NativeStructureOwnershipRecord;
 import art.arcane.iris.engine.framework.NativeStructurePlacementPlanner;
 import art.arcane.iris.engine.framework.NativeStructureStartPlan;
 import art.arcane.iris.engine.framework.NativeStructureVolume;
+import art.arcane.iris.engine.history.GenerationHistoryRuntimeRouter;
 import art.arcane.iris.engine.object.IrisNativeStructureDecision;
 import art.arcane.iris.spi.IrisLogging;
 import art.arcane.volmlib.util.collection.KList;
@@ -28,6 +30,7 @@ import net.minecraft.world.level.levelgen.structure.StructureSet;
 import net.minecraft.world.level.levelgen.structure.StructureStart;
 import net.minecraft.world.level.levelgen.structure.templatesystem.StructureTemplateManager;
 
+import java.io.IOException;
 import java.util.Collections;
 import java.util.LinkedHashMap;
 import java.util.Map;
@@ -38,6 +41,7 @@ import java.util.concurrent.CompletableFuture;
 import java.util.concurrent.ConcurrentHashMap;
 import java.util.concurrent.locks.ReentrantLock;
 import java.util.function.IntBinaryOperator;
+import java.util.function.IntConsumer;
 import java.util.function.Supplier;
 
 /**
@@ -60,13 +64,14 @@ public final class NativeStructureVolumeIndex {
 
     private final Context context;
     private final OriginResolver origins;
-    private final Map<Long, KList<NativeStructureVolume>> originCache = lru(MAX_CACHED_ORIGIN_CHUNKS);
-    private final Map<Long, KList<NativeStructureVolume>> queryCache = lru(MAX_CACHED_QUERY_CHUNKS);
-    private final ConcurrentHashMap<Long, CompletableFuture<KList<NativeStructureVolume>>> originBuilds =
+    private final Map<RuntimeChunkKey, KList<NativeStructureVolume>> originCache = lru(MAX_CACHED_ORIGIN_CHUNKS);
+    private final Map<RuntimeChunkKey, KList<NativeStructureVolume>> queryCache = lru(MAX_CACHED_QUERY_CHUNKS);
+    private final ConcurrentHashMap<RuntimeChunkKey, CompletableFuture<KList<NativeStructureVolume>>> originBuilds =
             new ConcurrentHashMap<>();
-    private final ConcurrentHashMap<Long, CompletableFuture<KList<NativeStructureVolume>>> queryBuilds =
+    private final ConcurrentHashMap<RuntimeChunkKey, CompletableFuture<KList<NativeStructureVolume>>> queryBuilds =
             new ConcurrentHashMap<>();
     private final ReentrantLock[] originWindowStripes = createOriginWindowStripes();
+    private final IntConsumer retirementListener = this::evictRuntime;
 
     private NativeStructureVolumeIndex(Context context) {
         this.context = Objects.requireNonNull(context, "Native structure volume context must not be null");
@@ -79,13 +84,25 @@ public final class NativeStructureVolumeIndex {
     }
 
     public static void install(Engine engine, Context context) {
-        Objects.requireNonNull(engine, "Native structure volume index requires an engine");
-        INDEXES.put(engine, new NativeStructureVolumeIndex(context));
+        Engine requiredEngine = Objects.requireNonNull(engine, "Native structure volume index requires an engine");
+        NativeStructureVolumeIndex installed = new NativeStructureVolumeIndex(context);
+        synchronized (INDEXES) {
+            NativeStructureVolumeIndex previous = INDEXES.put(requiredEngine, installed);
+            if (previous != null) {
+                previous.detachRetirementListener(requiredEngine);
+            }
+            installed.attachRetirementListener(requiredEngine);
+        }
     }
 
     public static void uninstall(Engine engine) {
         if (engine != null) {
-            INDEXES.remove(engine);
+            synchronized (INDEXES) {
+                NativeStructureVolumeIndex removed = INDEXES.remove(engine);
+                if (removed != null) {
+                    removed.detachRetirementListener(engine);
+                }
+            }
         }
     }
 
@@ -121,6 +138,7 @@ public final class NativeStructureVolumeIndex {
     }
 
     KList<NativeStructureVolume> resolve(Engine engine, int minX, int minZ, int maxX, int maxZ) {
+        int runtimeId = runtimeId(engine);
         int fromChunkX = Math.min(minX, maxX) >> 4;
         int toChunkX = Math.max(minX, maxX) >> 4;
         int fromChunkZ = Math.min(minZ, maxZ) >> 4;
@@ -128,7 +146,7 @@ public final class NativeStructureVolumeIndex {
         KList<NativeStructureVolume> matches = null;
         for (int chunkX = fromChunkX; chunkX <= toChunkX; chunkX++) {
             for (int chunkZ = fromChunkZ; chunkZ <= toChunkZ; chunkZ++) {
-                for (NativeStructureVolume volume : chunkVolumes(engine, chunkX, chunkZ)) {
+                for (NativeStructureVolume volume : chunkVolumes(engine, runtimeId, chunkX, chunkZ)) {
                     if (!volume.intersectsRect(minX, minZ, maxX, maxZ)) {
                         continue;
                     }
@@ -144,8 +162,13 @@ public final class NativeStructureVolumeIndex {
         return matches == null ? NativeStructureVolume.NONE : matches;
     }
 
-    private KList<NativeStructureVolume> chunkVolumes(Engine engine, int chunkX, int chunkZ) {
-        return cached(queryCache, queryBuilds, chunkKey(chunkX, chunkZ),
+    private KList<NativeStructureVolume> chunkVolumes(
+            Engine engine,
+            int runtimeId,
+            int chunkX,
+            int chunkZ
+    ) {
+        return cached(queryCache, queryBuilds, new RuntimeChunkKey(runtimeId, chunkKey(chunkX, chunkZ)),
                 () -> buildChunkVolumes(engine, chunkX, chunkZ));
     }
 
@@ -196,8 +219,16 @@ public final class NativeStructureVolumeIndex {
     }
 
     KList<NativeStructureVolume> originVolumes(Engine engine, int chunkX, int chunkZ) {
-        return cached(originCache, originBuilds, chunkKey(chunkX, chunkZ),
-                () -> origins.volumesAt(engine, chunkX, chunkZ));
+        try (GenerationHistoryRuntimeRouter.CoordinateScope ignored =
+                     openHistoryCoordinateScope(engine, chunkX, chunkZ)) {
+            int runtimeId = runtimeId(engine);
+            return cached(
+                    originCache,
+                    originBuilds,
+                    new RuntimeChunkKey(runtimeId, chunkKey(chunkX, chunkZ)),
+                    () -> origins.volumesAt(engine, chunkX, chunkZ)
+            );
+        }
     }
 
     private KList<NativeStructureVolume> buildOriginVolumes(Engine engine, int chunkX, int chunkZ) {
@@ -362,9 +393,23 @@ public final class NativeStructureVolumeIndex {
         return target;
     }
 
-    private KList<NativeStructureVolume> cached(Map<Long, KList<NativeStructureVolume>> cache,
-                                                ConcurrentHashMap<Long, CompletableFuture<KList<NativeStructureVolume>>> builds,
-                                                long key, Supplier<KList<NativeStructureVolume>> loader) {
+    void evictRuntime(int runtimeId) {
+        synchronized (originCache) {
+            originCache.keySet().removeIf(key -> key.runtimeId() == runtimeId);
+        }
+        synchronized (queryCache) {
+            queryCache.keySet().removeIf(key -> key.runtimeId() == runtimeId);
+        }
+        originBuilds.keySet().removeIf(key -> key.runtimeId() == runtimeId);
+        queryBuilds.keySet().removeIf(key -> key.runtimeId() == runtimeId);
+    }
+
+    private KList<NativeStructureVolume> cached(
+            Map<RuntimeChunkKey, KList<NativeStructureVolume>> cache,
+            ConcurrentHashMap<RuntimeChunkKey, CompletableFuture<KList<NativeStructureVolume>>> builds,
+            RuntimeChunkKey key,
+            Supplier<KList<NativeStructureVolume>> loader
+    ) {
         synchronized (cache) {
             KList<NativeStructureVolume> hit = cache.get(key);
             if (hit != null) {
@@ -392,7 +437,9 @@ public final class NativeStructureVolumeIndex {
         try {
             KList<NativeStructureVolume> built = loader.get();
             synchronized (cache) {
-                cache.put(key, built);
+                if (builds.get(key) == future) {
+                    cache.put(key, built);
+                }
             }
             future.complete(built);
             return built;
@@ -451,15 +498,52 @@ public final class NativeStructureVolumeIndex {
         }
     }
 
-    private static Map<Long, KList<NativeStructureVolume>> lru(int capacity) {
+    private static GenerationHistoryRuntimeRouter.CoordinateScope openHistoryCoordinateScope(
+            Engine engine,
+            int chunkX,
+            int chunkZ
+    ) {
+        if (!(engine instanceof IrisEngine irisEngine)) {
+            return null;
+        }
+        try {
+            return irisEngine.openGenerationHistoryCoordinateScope(chunkX << 4, chunkZ << 4);
+        } catch (IOException failure) {
+            throw new IllegalStateException("Unable to route native structure origin "
+                    + chunkX + "," + chunkZ + " through generation history.", failure);
+        }
+    }
+
+    private static int runtimeId(Engine engine) {
+        return engine == null ? 0 : engine.getCacheID();
+    }
+
+    private void attachRetirementListener(Engine engine) {
+        if (engine instanceof IrisEngine irisEngine) {
+            irisEngine.addGenerationRuntimeRetirementListener(retirementListener);
+        }
+    }
+
+    private void detachRetirementListener(Engine engine) {
+        if (engine instanceof IrisEngine irisEngine) {
+            irisEngine.removeGenerationRuntimeRetirementListener(retirementListener);
+        }
+    }
+
+    private static Map<RuntimeChunkKey, KList<NativeStructureVolume>> lru(int capacity) {
         return new LinkedHashMap<>(16, 0.75F, true) {
             @Override
-            protected boolean removeEldestEntry(Map.Entry<Long, KList<NativeStructureVolume>> eldest) {
+            protected boolean removeEldestEntry(
+                    Map.Entry<RuntimeChunkKey, KList<NativeStructureVolume>> eldest
+            ) {
                 return size() > capacity;
             }
         };
     }
 
+    private record RuntimeChunkKey(int runtimeId, long chunkKey) {
+    }
+
     /**
      * The generator, biome source and structure state arrive as suppliers so an installed index never holds the
      * level (and through it the engine) strongly. That keeps the weakly keyed registry collectable on world unload.

adapters/modded-common/src/main/java/art/arcane/iris/modded/IrisModdedBiomeSource.java

@@ -22,9 +22,11 @@ import art.arcane.iris.core.loader.IrisData;
 import art.arcane.iris.engine.DimensionStackContext;
 import art.arcane.iris.engine.DimensionStackLayout;
 import art.arcane.iris.engine.DimensionTerrainContext;
+import art.arcane.iris.engine.IrisEngine;
 import art.arcane.iris.engine.framework.Engine;
 import art.arcane.iris.engine.framework.GenerationSessionException;
 import art.arcane.iris.engine.framework.GenerationSessionLease;
+import art.arcane.iris.engine.history.GenerationHistoryRuntimeRouter;
 import art.arcane.iris.engine.object.IrisBiome;
 import art.arcane.iris.engine.object.IrisBiomeCustom;
 import art.arcane.iris.engine.object.IrisDimension;
@@ -51,6 +53,7 @@ import net.minecraft.world.level.biome.Climate;
 import net.minecraft.world.level.levelgen.structure.Structure;
 import net.minecraft.world.level.levelgen.structure.StructureSet;
 
+import java.io.IOException;
 import java.util.ArrayList;
 import java.util.Collections;
 import java.util.HashSet;
@@ -72,7 +75,6 @@ final class IrisModdedBiomeSource extends BiomeSource {
 
     private final BiomeSource serializedSource;
     private final Set<String> warnedUnresolvedBiomeKeys = ConcurrentHashMap.newKeySet();
-    private final Set<StructureStateBiomeSource> structureStateSources = ConcurrentHashMap.newKeySet();
     // Pack generation. Every cache on this source is keyed by it, which is what keeps memoized tables from
     // surviving a repoint with the previous pack's content.
     private final AtomicLong packGeneration = new AtomicLong();
@@ -105,9 +107,12 @@ final class IrisModdedBiomeSource extends BiomeSource {
         possibleStructureBiomeKeys = null;
         biomeKeySets = null;
         possibleBiomesCache = null;
-        for (StructureStateBiomeSource source : structureStateSources) {
-            source.clearCache();
-        }
+    }
+
+    void evictRuntime(int runtimeIdentity) {
+        visibleBiomeCache.evictRuntime(runtimeIdentity);
+        structureBiomeCache.evictRuntime(runtimeIdentity);
+        surfaceStructureBiomeCache.evictRuntime(runtimeIdentity);
     }
 
     /**
@@ -141,7 +146,6 @@ final class IrisModdedBiomeSource extends BiomeSource {
             }
         });
         StructureStateBiomeSource source = new StructureStateBiomeSource(this, Set.copyOf(possible));
-        structureStateSources.add(source);
         return source;
     }
 
@@ -308,15 +312,19 @@ final class IrisModdedBiomeSource extends BiomeSource {
         if (engine == null) {
             return serializedSource.getNoiseBiome(quartX, quartY, quartZ, sampler);
         }
-        GenerationSessionLease lease = tryAcquireGenerationLease(engine, "modded_structure_biome");
-        if (lease == null) {
-            throw new IllegalStateException("Iris structure biome lookup was rejected during an engine transition");
-        }
-        try (lease; IrisContext.Scope ignored = IrisContext.open(engine, lease.sessionId(), null)) {
-            if (!isReady(engine)) {
-                throw new IllegalStateException("Iris structure biome lookup has no active engine runtime");
+        GenerationHistoryRuntimeRouter.CoordinateScope historyScope = openHistoryCoordinateScope(
+                engine, quartX << 2, quartZ << 2, "modded_structure_biome");
+        try (historyScope) {
+            GenerationSessionLease lease = tryAcquireGenerationLease(engine, "modded_structure_biome");
+            if (lease == null) {
+                throw new IllegalStateException("Iris structure biome lookup was rejected during an engine transition");
+            }
+            try (lease; IrisContext.Scope ignored = IrisContext.open(engine, lease.sessionId(), null)) {
+                if (!isReady(engine)) {
+                    throw new IllegalStateException("Iris structure biome lookup has no active engine runtime");
+                }
+                return getNoiseBiome(engine, quartX, quartY, quartZ, sampler);
             }
-            return getNoiseBiome(engine, quartX, quartY, quartZ, sampler);
         }
     }
 
@@ -394,16 +402,17 @@ final class IrisModdedBiomeSource extends BiomeSource {
                 QuartPos.toBlock(quartZ)
         );
         long key = packNoiseKey(quartX, quartY, quartZ);
+        int runtimeIdentity = engine.getCacheID();
         BiomeHolderTable cache = structureBiomeCache;
         if (cacheable) {
-            Holder<Biome> cached = cache.get(key);
+            Holder<Biome> cached = cache.get(runtimeIdentity, key);
             if (cached != null) {
                 return cached;
             }
         }
         Holder<Biome> resolved = resolveStructureBiome(engine, quartX, quartY, quartZ, sampler);
         if (cacheable) {
-            cache.put(key, resolved);
+            cache.put(runtimeIdentity, key, resolved);
         }
         return resolved;
     }
@@ -413,16 +422,20 @@ final class IrisModdedBiomeSource extends BiomeSource {
         if (engine == null) {
             return serializedSource.getNoiseBiome(quartX, quartY, quartZ, sampler);
         }
-        GenerationSessionLease lease = tryAcquireGenerationLease(engine, "modded_visible_biome");
-        if (lease == null) {
-            throw new IllegalStateException("Iris visible biome lookup was rejected during an engine transition");
-        }
-        try (lease; IrisContext.Scope ignored = IrisContext.open(engine, lease.sessionId(), null)) {
-            if (!isReady(engine)) {
-                throw new IllegalStateException("Iris visible biome lookup has no active engine runtime");
+        GenerationHistoryRuntimeRouter.CoordinateScope historyScope = openHistoryCoordinateScope(
+                engine, quartX << 2, quartZ << 2, "modded_visible_biome");
+        try (historyScope) {
+            GenerationSessionLease lease = tryAcquireGenerationLease(engine, "modded_visible_biome");
+            if (lease == null) {
+                throw new IllegalStateException("Iris visible biome lookup was rejected during an engine transition");
+            }
+            try (lease; IrisContext.Scope ignored = IrisContext.open(engine, lease.sessionId(), null)) {
+                if (!isReady(engine)) {
+                    throw new IllegalStateException("Iris visible biome lookup has no active engine runtime");
+                }
+                return getVisibleNoiseBiomeWithActiveGenerationLease(
+                        engine, quartX, quartY, quartZ, sampler);
             }
-            return getVisibleNoiseBiomeWithActiveGenerationLease(
-                    engine, quartX, quartY, quartZ, sampler);
         }
     }
 
@@ -439,16 +452,18 @@ final class IrisModdedBiomeSource extends BiomeSource {
                 QuartPos.toBlock(quartZ)
         );
         long key = packNoiseKey(quartX, quartY, quartZ);
+        int runtimeIdentity = engine.getCacheID();
         BiomeHolderTable cache = visibleBiomeCache;
         if (cacheable) {
-            Holder<Biome> cached = cache.get(key);
+            Holder<Biome> cached = cache.get(runtimeIdentity, key);
             if (cached != null) {
                 return cached;
             }
         }
-        Holder<Biome> resolved = resolveVisibleBiome(engine, quartX, quartY, quartZ, sampler);
+        Holder<Biome> resolved = resolveVisibleBiome(
+                engine, quartX, quartY, quartZ, sampler, null);
         if (cacheable) {
-            cache.put(key, resolved);
+            cache.put(runtimeIdentity, key, resolved);
         }
         return resolved;
     }
@@ -458,45 +473,50 @@ final class IrisModdedBiomeSource extends BiomeSource {
         if (engine == null) {
             return null;
         }
-        GenerationSessionLease lease = tryAcquireGenerationLease(engine, "modded_surface_spawn_biome");
-        if (lease == null) {
-            return null;
-        }
-        try (lease; IrisContext.Scope ignored = IrisContext.open(engine, lease.sessionId(), null)) {
-            if (!isReady(engine)) {
+        GenerationHistoryRuntimeRouter.CoordinateScope historyScope = openHistoryCoordinateScope(
+                engine, blockX, blockZ, "modded_surface_spawn_biome");
+        try (historyScope) {
+            GenerationSessionLease lease = tryAcquireGenerationLease(engine, "modded_surface_spawn_biome");
+            if (lease == null) {
                 return null;
             }
-            Registry<Biome> registry = biomeRegistry();
-            if (registry == null) {
-                return null;
-            }
-            int quartX = QuartPos.fromBlock(blockX);
-            int quartZ = QuartPos.fromBlock(blockZ);
-            int sampleX = QuartPos.toBlock(quartX);
-            int sampleZ = QuartPos.toBlock(quartZ);
-            boolean cacheable = isBiomeCacheable(engine, sampleX, sampleZ);
-            DimensionStackContext stackContext = engine.getDimensionStackContext();
-            DimensionStackLayout.Layer layer = stackContext == null
-                    ? null
-                    : stackContext.getLayout(sampleX, sampleZ).surfaceLayer();
-            int internalY = layer == null
-                    ? Engine.hostHeight(engine, sampleX, sampleZ, true)
-                    : layer.clippedSurfaceY();
-            int quartY = QuartPos.fromBlock(internalY + engine.getMinHeight());
-            long key = packNoiseKey(quartX, quartY, quartZ);
-            BiomeHolderTable cache = visibleBiomeCache;
-            if (cacheable) {
-                Holder<Biome> cached = cache.get(key);
-                if (cached != null) {
-                    return cached;
+            try (lease; IrisContext.Scope ignored = IrisContext.open(engine, lease.sessionId(), null)) {
+                if (!isReady(engine)) {
+                    return null;
                 }
+                Registry<Biome> registry = biomeRegistry();
+                if (registry == null) {
+                    return null;
+                }
+                int quartX = QuartPos.fromBlock(blockX);
+                int quartZ = QuartPos.fromBlock(blockZ);
+                int sampleX = QuartPos.toBlock(quartX);
+                int sampleZ = QuartPos.toBlock(quartZ);
+                boolean cacheable = isBiomeCacheable(engine, sampleX, sampleZ);
+                DimensionStackContext stackContext = engine.getDimensionStackContext();
+                DimensionStackLayout.Layer layer = stackContext == null
+                        ? null
+                        : stackContext.getLayout(sampleX, sampleZ).surfaceLayer();
+                int internalY = layer == null
+                        ? Engine.hostHeight(engine, sampleX, sampleZ, true)
+                        : layer.clippedSurfaceY();
+                int quartY = QuartPos.fromBlock(internalY + engine.getMinHeight());
+                long key = packNoiseKey(quartX, quartY, quartZ);
+                int runtimeIdentity = engine.getCacheID();
+                BiomeHolderTable cache = visibleBiomeCache;
+                if (cacheable) {
+                    Holder<Biome> cached = cache.get(runtimeIdentity, key);
+                    if (cached != null) {
+                        return cached;
+                    }
+                }
+                Holder<Biome> resolved = resolveVisibleBiome(
+                        engine, quartX, quartY, quartZ, null, null);
+                if (cacheable) {
+                    cache.put(runtimeIdentity, key, resolved);
+                }
+                return resolved;
             }
-            Holder<Biome> resolved = resolveVisibleBiome(
-                    engine, quartX, quartY, quartZ, null);
-            if (cacheable) {
-                cache.put(key, resolved);
-            }
-            return resolved;
         }
     }
 
@@ -535,13 +555,19 @@ final class IrisModdedBiomeSource extends BiomeSource {
         if (lease == null) {
             throw new IllegalStateException("Iris biome radius lookup was rejected during an engine transition");
         }
-        try (lease; IrisContext.Scope ignored = IrisContext.open(engine, lease.sessionId(), null)) {
-            if (!isReady(engine)) {
-                throw new IllegalStateException("Iris biome radius lookup has no active engine runtime");
+        boolean surfaceQuery;
+        try (lease) {
+            try (GenerationHistoryRuntimeRouter.CoordinateScope historyScope = openHistoryCoordinateScope(
+                         engine, x, z, "modded_biomes_within");
+                 IrisContext.Scope ignored = IrisContext.open(engine, lease.sessionId(), null)) {
+                if (!isReady(engine)) {
+                    throw new IllegalStateException("Iris biome radius lookup has no active engine runtime");
+                }
+                boolean monumentQuery = isMonumentSurfaceBiomeQuery(
+                        y, radius, engine.getMinHeight(), engine.getDimension().getFluidHeight());
+                surfaceQuery = monumentQuery || isGuaranteedSurfaceBiome(minQuartY, engine.getMinHeight());
             }
-            boolean monumentQuery = isMonumentSurfaceBiomeQuery(
-                    y, radius, engine.getMinHeight(), engine.getDimension().getFluidHeight());
-            if (!monumentQuery && !isGuaranteedSurfaceBiome(minQuartY, engine.getMinHeight())) {
+            if (!surfaceQuery) {
                 return super.getBiomesWithin(x, y, z, radius, sampler);
             }
             int minQuartX = QuartPos.fromBlock(x - radius);
@@ -552,7 +578,11 @@ final class IrisModdedBiomeSource extends BiomeSource {
             Set<Holder<Biome>> biomes = new HashSet<>(columns);
             for (int quartZ = minQuartZ; quartZ <= maxQuartZ; quartZ++) {
                 for (int quartX = minQuartX; quartX <= maxQuartX; quartX++) {
-                    biomes.add(getSurfaceStructureBiome(engine, quartX, quartZ, sampler));
+                    try (GenerationHistoryRuntimeRouter.CoordinateScope historyScope = openHistoryCoordinateScope(
+                                 engine, quartX << 2, quartZ << 2, "modded_biomes_within");
+                         IrisContext.Scope ignored = IrisContext.open(engine, lease.sessionId(), null)) {
+                        biomes.add(getSurfaceStructureBiome(engine, quartX, quartZ, sampler));
+                    }
                 }
             }
             return biomes;
@@ -562,13 +592,14 @@ final class IrisModdedBiomeSource extends BiomeSource {
     private Holder<Biome> getSurfaceStructureBiome(Engine engine, int quartX, int quartZ,
                                                    Climate.Sampler sampler) {
         long key = packColumnKey(quartX, quartZ);
+        int runtimeIdentity = engine.getCacheID();
         BiomeHolderTable cache = surfaceStructureBiomeCache;
-        Holder<Biome> cached = cache.get(key);
+        Holder<Biome> cached = cache.get(runtimeIdentity, key);
         if (cached != null) {
             return cached;
         }
         Holder<Biome> resolved = resolveSurfaceStructureBiome(engine, quartX, quartZ, sampler);
-        cache.put(key, resolved);
+        cache.put(runtimeIdentity, key, resolved);
         return resolved;
     }
 
@@ -618,11 +649,6 @@ final class IrisModdedBiomeSource extends BiomeSource {
         return resolved;
     }
 
-    private Holder<Biome> resolveVisibleBiome(Engine engine, int quartX, int quartY, int quartZ,
-                                              Climate.Sampler sampler) {
-        return resolveVisibleBiome(engine, quartX, quartY, quartZ, sampler, null);
-    }
-
     private Holder<Biome> resolveVisibleBiome(
             Engine engine,
             int quartX,
@@ -637,20 +663,21 @@ final class IrisModdedBiomeSource extends BiomeSource {
         if (resolution == null || registry == null) {
             return serializedSource.getNoiseBiome(quartX, quartY, quartZ, sampler);
         }
-        return resolveVisibleBiome(
-                engine, registry, resolution, quartX, quartY, quartZ, sampler);
-    }
-
-    private Holder<Biome> resolveVisibleBiome(
-            Engine engine,
-            Registry<Biome> registry,
-            BiomeResolution resolution,
-            int quartX,
-            int quartY,
-            int quartZ,
-            Climate.Sampler sampler
-    ) {
+        String historicalBiomeKey = engine.getComplex().historicalPhysicalBiomeKeyAt(
+                resolution.blockX(),
+                resolution.blockY(),
+                resolution.blockZ()).orElse(null);
+        if (historicalBiomeKey != null) {
+            Holder<Biome> historical = resolveHolder(registry, historicalBiomeKey);
+            if (historical == null) {
+                throw new IllegalStateException("Historical Iris biome '" + historicalBiomeKey
+                        + "' is not registered at block " + resolution.blockX() + ","
+                        + resolution.blockY() + "," + resolution.blockZ());
+            }
+            return historical;
+        }
         String biomeKey;
+        String unresolvedBiomeKey;
         if (resolution.irisBiome().isCustom()) {
             IrisBiomeCustom customBiome = resolution.irisBiome().getCustomBiome(
                     resolution.rng(), engine, resolution.blockX(), resolution.blockY(), resolution.blockZ());
@@ -658,18 +685,27 @@ final class IrisModdedBiomeSource extends BiomeSource {
                 return fallbackBiome(registry, "custom derivative of '"
                         + resolution.irisBiome().getLoadKey() + "'", quartX, quartY, quartZ, sampler);
             }
-            biomeKey = customBiomeRef(
+            String logicalBiomeKey = customBiomeRef(
                     resolution.packName(), resolution.dimension(), customBiome.getId());
+            biomeKey = resolution.dimension() == engine.getDimension()
+                    && resolution.data() == engine.getData()
+                    ? ModdedWorldgenIds.biomeRef(engine, customBiome.getId())
+                    : resolution.data().customBiomeResourceKey(resolution.dimension(), customBiome);
+            unresolvedBiomeKey = logicalBiomeKey.equals(biomeKey)
+                    ? biomeKey
+                    : logicalBiomeKey + " mapped to " + biomeKey;
         } else if (resolution.underground()) {
             biomeKey = resolution.irisBiome().getGroundBiomeKey(
                     resolution.rng(), engine, resolution.blockX(), resolution.blockY(), resolution.blockZ());
+            unresolvedBiomeKey = biomeKey;
         } else {
             biomeKey = resolution.irisBiome().getSkyBiomeKey(
                     resolution.rng(), engine, resolution.blockX(), resolution.blockY(), resolution.blockZ());
+            unresolvedBiomeKey = biomeKey;
         }
         Holder<Biome> resolved = resolveHolder(registry, biomeKey);
         return resolved == null
-                ? fallbackBiome(registry, biomeKey, quartX, quartY, quartZ, sampler)
+                ? fallbackBiome(registry, unresolvedBiomeKey, quartX, quartY, quartZ, sampler)
                 : resolved;
     }
 
@@ -784,43 +820,30 @@ final class IrisModdedBiomeSource extends BiomeSource {
         );
     }
 
-    private Holder<Biome> resolveRequiredStructureBiome(int quartX, int quartY, int quartZ) {
+    private Holder<Biome> resolveRequiredStructureBiome(
+            int quartX,
+            int quartY,
+            int quartZ,
+            Climate.Sampler sampler
+    ) {
         IrisModdedChunkGenerator current = generator;
         if (current == null) {
             throw new IllegalStateException("Iris structure biome source is not bound to its generator");
         }
         Engine engine = current.awaitStructureEngine();
-        GenerationSessionLease lease = tryAcquireGenerationLease(engine, "modded_structure_state_biome");
-        if (lease == null) {
-            throw new IllegalStateException("Iris structure biome lookup was rejected during an engine transition");
-        }
-        try (lease; IrisContext.Scope ignored = IrisContext.open(engine, lease.sessionId(), null)) {
-            if (!isReady(engine)) {
-                throw new IllegalStateException("Iris structure biome lookup has no active engine runtime");
+        GenerationHistoryRuntimeRouter.CoordinateScope historyScope = openHistoryCoordinateScope(
+                engine, quartX << 2, quartZ << 2, "modded_structure_state_biome");
+        try (historyScope) {
+            GenerationSessionLease lease = tryAcquireGenerationLease(engine, "modded_structure_state_biome");
+            if (lease == null) {
+                throw new IllegalStateException("Iris structure biome lookup was rejected during an engine transition");
             }
-            Registry<Biome> registry = biomeRegistry();
-            if (registry == null) {
-                throw new IllegalStateException("Iris structure biome lookup has no biome registry");
+            try (lease; IrisContext.Scope ignored = IrisContext.open(engine, lease.sessionId(), null)) {
+                if (!isReady(engine)) {
+                    throw new IllegalStateException("Iris structure biome lookup has no active engine runtime");
+                }
+                return getNoiseBiome(engine, quartX, quartY, quartZ, sampler);
             }
-            IrisBiome irisBiome;
-            if (isGuaranteedSurfaceBiome(quartY, engine.getMinHeight())) {
-                irisBiome = resolveSurfaceStructureBiome(engine, quartX << 2, quartZ << 2);
-            } else {
-                BiomeResolution resolution = resolveStructureBiomeResolution(
-                        engine, quartX, quartY, quartZ);
-                irisBiome = resolution == null ? null : resolution.irisBiome();
-            }
-            if (irisBiome == null) {
-                throw new IllegalStateException("Iris returned no structure biome at quart "
-                        + quartX + "," + quartY + "," + quartZ);
-            }
-            String derivativeKey = irisBiome.getStructureDerivativeKey();
-            Holder<Biome> resolved = resolveHolder(registry, derivativeKey);
-            if (resolved == null) {
-                throw new IllegalStateException("Iris structure biome derivative '" + derivativeKey
-                        + "' is not registered at quart " + quartX + "," + quartY + "," + quartZ);
-            }
-            return resolved;
         }
     }
 
@@ -875,6 +898,30 @@ final class IrisModdedBiomeSource extends BiomeSource {
         return current == null ? null : current.structureEngineOrNull();
     }
 
+    private GenerationHistoryRuntimeRouter.CoordinateScope openHistoryCoordinateScope(
+            Engine engine,
+            int blockX,
+            int blockZ,
+            String operation
+    ) {
+        IrisModdedChunkGenerator current = generator;
+        if (current != null && current.allowsGenerationHistoryBypass(engine)) {
+            return null;
+        }
+        if (!(engine instanceof IrisEngine irisEngine)) {
+            throw new IllegalStateException("Iris " + operation + " requires an IrisEngine runtime.");
+        }
+        GenerationHistoryRuntimeRouter router = irisEngine.getGenerationHistoryRuntimeRouter().orElseThrow(() ->
+                new IllegalStateException("Iris " + operation
+                        + " requires an attached generation-history runtime router."));
+        try {
+            return router.openCoordinateScope(blockX, blockZ);
+        } catch (IOException failure) {
+            throw new IllegalStateException("Iris " + operation + " could not route block "
+                    + blockX + "," + blockZ + " through generation history.", failure);
+        }
+    }
+
     private GenerationSessionLease tryAcquireGenerationLease(Engine engine, String operation) {
         if (engine == null || engine.isClosed()) {
             return null;
@@ -950,8 +997,9 @@ final class IrisModdedBiomeSource extends BiomeSource {
             if (!isReady(engine)) {
                 throw new IllegalStateException("Iris structure biome key lookup has no active engine runtime");
             }
-            Set<String> structureRequired = collectStructureBiomeKeys(
-                    engine.getDimension(), engine.getData());
+            LinkedHashSet<String> structureRequired = new LinkedHashSet<>(collectStructureBiomeKeys(
+                    engine.getDimension(), engine.getData()));
+            structureRequired.addAll(IrisModdedChunkGenerator.retainedBiomeKeys(engine));
             LinkedHashSet<String> visibleRequired = new LinkedHashSet<>();
             LinkedHashSet<String> visibleEmittable = new LinkedHashSet<>();
             boolean visibleFallbackPossible = false;
@@ -959,11 +1007,8 @@ final class IrisModdedBiomeSource extends BiomeSource {
                 IrisBiome irisBiome = ownedBiome.biome();
                 if (irisBiome.isCustom()) {
                     for (IrisBiomeCustom customBiome : irisBiome.getCustomDerivitives()) {
-                        String customKey = customBiomeRef(
-                                ownedBiome.data().getDataFolder().getName(),
-                                ownedBiome.dimension(),
-                                customBiome.getId()
-                        );
+                        String customKey = ownedBiome.data().customBiomeResourceKey(
+                                ownedBiome.dimension(), customBiome);
                         visibleRequired.add(customKey);
                         visibleEmittable.add(customKey);
                     }
@@ -1035,6 +1080,7 @@ final class IrisModdedBiomeSource extends BiomeSource {
                 irisBiome,
                 underground,
                 dimension,
+                data,
                 data.getDataFolder().getName(),
                 blockX,
                 blockY,
@@ -1181,6 +1227,7 @@ final class IrisModdedBiomeSource extends BiomeSource {
             IrisBiome irisBiome,
             boolean underground,
             IrisDimension dimension,
+            IrisData data,
             String packName,
             int blockX,
             int blockY,
@@ -1224,35 +1271,36 @@ final class IrisModdedBiomeSource extends BiomeSource {
 
         private volatile AtomicReferenceArray<Entry> table;
 
-        Holder<Biome> get(long key) {
+        Holder<Biome> get(int runtimeIdentity, long key) {
             AtomicReferenceArray<Entry> slots = table;
             if (slots == null) {
                 return null;
             }
-            int home = home(key);
+            int home = home(runtimeIdentity, key);
             for (int probe = 0; probe < PROBE_LIMIT; probe++) {
                 Entry entry = slots.get((home + probe) & MASK);
                 if (entry == null) {
                     return null;
                 }
-                if (entry.key() == key) {
+                if (entry.runtimeIdentity() == runtimeIdentity && entry.key() == key) {
                     return entry.value();
                 }
             }
             return null;
         }
 
-        void put(long key, Holder<Biome> value) {
+        void put(int runtimeIdentity, long key, Holder<Biome> value) {
             AtomicReferenceArray<Entry> slots = table;
             if (slots == null) {
                 slots = install();
             }
-            int home = home(key);
-            Entry entry = new Entry(key, value);
+            int home = home(runtimeIdentity, key);
+            Entry entry = new Entry(runtimeIdentity, key, value);
             for (int probe = 0; probe < PROBE_LIMIT; probe++) {
                 int slot = (home + probe) & MASK;
                 Entry existing = slots.get(slot);
-                if (existing == null || existing.key() == key) {
+                if (existing == null
+                        || (existing.runtimeIdentity() == runtimeIdentity && existing.key() == key)) {
                     slots.set(slot, entry);
                     return;
                 }
@@ -1260,6 +1308,19 @@ final class IrisModdedBiomeSource extends BiomeSource {
             slots.set(home, entry);
         }
 
+        void evictRuntime(int runtimeIdentity) {
+            AtomicReferenceArray<Entry> slots = table;
+            if (slots == null) {
+                return;
+            }
+            for (int index = 0; index < slots.length(); index++) {
+                Entry entry = slots.get(index);
+                if (entry != null && entry.runtimeIdentity() == runtimeIdentity) {
+                    slots.compareAndSet(index, entry, null);
+                }
+            }
+        }
+
         private synchronized AtomicReferenceArray<Entry> install() {
             AtomicReferenceArray<Entry> existing = table;
             if (existing != null) {
@@ -1270,29 +1331,25 @@ final class IrisModdedBiomeSource extends BiomeSource {
             return created;
         }
 
-        private static int home(long key) {
-            long mixed = key * 0x9E3779B97F4A7C15L;
+        private static int home(int runtimeIdentity, long key) {
+            long mixed = (key ^ ((long) runtimeIdentity * 0xC2B2AE3D27D4EB4FL))
+                    * 0x9E3779B97F4A7C15L;
             return (int) ((mixed ^ (mixed >>> 32)) & MASK);
         }
 
-        private record Entry(long key, Holder<Biome> value) {
+        private record Entry(int runtimeIdentity, long key, Holder<Biome> value) {
         }
     }
 
     private static final class StructureStateBiomeSource extends BiomeSource {
         private final IrisModdedBiomeSource delegate;
         private final Set<Holder<Biome>> possibleBiomes;
-        private volatile BiomeHolderTable resolvedBiomes = new BiomeHolderTable();
 
         private StructureStateBiomeSource(IrisModdedBiomeSource delegate, Set<Holder<Biome>> possibleBiomes) {
             this.delegate = delegate;
             this.possibleBiomes = possibleBiomes;
         }
 
-        private void clearCache() {
-            resolvedBiomes = new BiomeHolderTable();
-        }
-
         @Override
         protected MapCodec<? extends BiomeSource> codec() {
             throw new UnsupportedOperationException("Structure state biome sources are not serializable");
@@ -1305,15 +1362,7 @@ final class IrisModdedBiomeSource extends BiomeSource {
 
         @Override
         public Holder<Biome> getNoiseBiome(int x, int y, int z, Climate.Sampler sampler) {
-            long key = packNoiseKey(x, y, z);
-            BiomeHolderTable cache = resolvedBiomes;
-            Holder<Biome> cached = cache.get(key);
-            if (cached != null) {
-                return cached;
-            }
-            Holder<Biome> resolved = delegate.resolveRequiredStructureBiome(x, y, z);
-            cache.put(key, resolved);
-            return resolved;
+            return delegate.resolveRequiredStructureBiome(x, y, z, sampler);
         }
 
         @Override

adapters/modded-common/src/main/java/art/arcane/iris/modded/IrisModdedChunkGenerator.java

@@ -20,11 +20,17 @@ package art.arcane.iris.modded;
 
 import art.arcane.iris.core.loader.IrisData;
 import art.arcane.iris.core.pack.PackValidationRegistry;
+import art.arcane.iris.engine.IrisEngine;
 import art.arcane.iris.engine.framework.Engine;
-import art.arcane.iris.engine.framework.NativeFeatureGenerationPolicy;
 import art.arcane.iris.engine.framework.GenerationSessionException;
 import art.arcane.iris.engine.framework.GenerationSessionLease;
+import art.arcane.iris.engine.framework.NativeFeatureGenerationPolicy;
 import art.arcane.iris.engine.framework.NativeStructureStartPlan;
+import art.arcane.iris.engine.history.GenerationEpoch;
+import art.arcane.iris.engine.history.GenerationHistory;
+import art.arcane.iris.engine.history.GenerationHistoryRuntimeRouter;
+import art.arcane.iris.engine.history.GenerationRegistryContract;
+import art.arcane.iris.engine.history.GenerationRegistryContractFactory;
 import art.arcane.iris.engine.object.IrisDimension;
 import art.arcane.iris.engine.object.IrisImportedStructureControl;
 import art.arcane.iris.nativegen.NativeStructureStartInjector;
@@ -73,6 +79,7 @@ import net.minecraft.world.level.chunk.ChunkAccess;
 import net.minecraft.world.level.chunk.ChunkGenerator;
 import net.minecraft.world.level.chunk.ChunkGeneratorStructureState;
 import net.minecraft.world.level.chunk.LevelChunkSection;
+import net.minecraft.world.level.chunk.status.ChunkStatus;
 import net.minecraft.world.level.levelgen.Heightmap;
 import net.minecraft.world.level.levelgen.LegacyRandomSource;
 import net.minecraft.world.level.levelgen.RandomState;
@@ -85,18 +92,25 @@ import net.minecraft.world.level.levelgen.structure.StructureStart;
 import net.minecraft.world.level.levelgen.structure.templatesystem.StructureTemplateManager;
 
 import java.io.File;
+import java.io.IOException;
+import java.nio.file.Path;
 import java.util.Arrays;
+import java.util.Collection;
 import java.util.EnumSet;
 import java.util.HashMap;
+import java.util.LinkedHashSet;
 import java.util.List;
 import java.util.Map;
 import java.util.Objects;
 import java.util.Set;
 import java.util.TreeSet;
+import java.util.concurrent.CancellationException;
 import java.util.concurrent.CompletableFuture;
+import java.util.concurrent.CompletionException;
 import java.util.concurrent.TimeUnit;
 import java.util.concurrent.atomic.AtomicBoolean;
 import java.util.function.IntBinaryOperator;
+import java.util.function.IntConsumer;
 
 public final class IrisModdedChunkGenerator extends ChunkGenerator {
     // Vanilla-shaped fallback for an unbound generator (matches IrisDimension defaults). getMinY,
@@ -127,16 +141,20 @@ public final class IrisModdedChunkGenerator extends ChunkGenerator {
     private final ModdedSpawnTableMerger spawnTables = new ModdedSpawnTableMerger(this);
     private final ModdedImportedFeatureStage importedFeatures;
     private final AtomicBoolean announced = new AtomicBoolean(false);
+    private final IntConsumer generationRuntimeRetirementListener = this::retireGenerationRuntimeCaches;
     private volatile boolean unloading;
     private volatile Engine engine;
     private volatile String activePack;
     private volatile String activeDimensionKey;
+    private volatile Path immutablePackRoot;
+    private volatile ModdedGenerationMode generationMode = ModdedGenerationMode.PERSISTENT_RESTORE;
     private volatile long seedOverride = Long.MIN_VALUE;
     private volatile long lastChunkGenAt = 0L;
     private volatile Set<String> configuredStructureBiomeKeys;
     private volatile ModdedDimensionMetadata.ConfiguredPack configuredPack;
     private volatile ModdedDimensionMetadata.DimensionMetadata heightMetadata;
     private volatile ServerLevel boundLevel;
+    private volatile IrisEngine retirementListenerEngine;
 
     public IrisModdedChunkGenerator(BiomeSource biomeSource, String dimensionKey) {
         this(biomeSource, dimensionKey, new IrisModdedBiomeSource(biomeSource));
@@ -169,12 +187,39 @@ public final class IrisModdedChunkGenerator extends ChunkGenerator {
     }
 
     public synchronized void repoint(String pack, String packDimensionKey, long seed) {
+        repoint(
+                pack,
+                packDimensionKey,
+                seed,
+                null,
+                ModdedGenerationMode.PERSISTENT_RESTORE
+        );
+    }
+
+    synchronized void repoint(String pack, String packDimensionKey, long seed, Path packRoot) {
+        repoint(
+                pack,
+                packDimensionKey,
+                seed,
+                packRoot,
+                ModdedGenerationMode.PERSISTENT_RESTORE
+        );
+    }
+
+    synchronized void repoint(
+            String pack,
+            String packDimensionKey,
+            long seed,
+            Path packRoot,
+            ModdedGenerationMode generationMode
+    ) {
         ServerLevel level = boundLevel();
         if (level != null) {
+            this.generationMode = generationMode;
             repointAndBind(level, pack, packDimensionKey, seed);
             return;
         }
-        applyUnboundConfiguration(pack, packDimensionKey, seed);
+        applyUnboundConfiguration(pack, packDimensionKey, seed, packRoot, generationMode);
     }
 
     synchronized void repointAndBind(ServerLevel level, String pack, String packDimensionKey, long seed) {
@@ -185,7 +230,13 @@ public final class IrisModdedChunkGenerator extends ChunkGenerator {
         requireGlobalStructureGeneration(
                 level.getServer().getWorldGenSettings().options().generateStructures(), dimensionKey);
         Engine activeEngine = engineIfBound();
-        Engine replacement = ModdedWorldEngines.prepareReplacement(level, pack, packDimensionKey, seed);
+        Engine replacement = ModdedWorldEngines.prepareReplacement(
+                level,
+                pack,
+                packDimensionKey,
+                seed,
+                generationMode
+        );
         try {
             if (activeEngine != null) {
                 requireStructureBiomeUniverseCompatible(
@@ -213,13 +264,15 @@ public final class IrisModdedChunkGenerator extends ChunkGenerator {
         this.activePack = pack;
         this.activeDimensionKey = packDimensionKey;
         this.seedOverride = seed;
+        this.engine = replacement;
+        bindGenerationRuntimeRetirementListener(replacement);
+        this.immutablePackRoot = replacement.getData().getDataFolder().toPath().toAbsolutePath().normalize();
         this.configuredStructureBiomeKeys = null;
         this.configuredPack = null;
         this.heightMetadata = engineHeights(replacement);
         this.engineBinding.reset();
         this.announced.set(false);
         resetRuntimeCaches();
-        this.engine = replacement;
         this.engineBinding.complete(replacement);
         // Bind time: a feature-order cycle in the new pack is reported here, once, and degrades to features-off.
         // Never waits on a build owned by another thread: this method owns the generator monitor and the build
@@ -242,10 +295,12 @@ public final class IrisModdedChunkGenerator extends ChunkGenerator {
     }
 
     private void clearEngineBinding() {
+        unbindGenerationRuntimeRetirementListener();
         this.engine = null;
         this.boundLevel = null;
         this.configuredStructureBiomeKeys = null;
         this.configuredPack = null;
+        this.immutablePackRoot = null;
         this.engineBinding.reset();
         this.announced.set(false);
         this.structureBiomeSource.clearCaches();
@@ -254,10 +309,19 @@ public final class IrisModdedChunkGenerator extends ChunkGenerator {
         this.spawnTables.resetVanillaSpawnBiomes();
     }
 
-    private void applyUnboundConfiguration(String pack, String packDimensionKey, long seed) {
+    private void applyUnboundConfiguration(
+            String pack,
+            String packDimensionKey,
+            long seed,
+            Path packRoot,
+            ModdedGenerationMode generationMode
+    ) {
+        unbindGenerationRuntimeRetirementListener();
         this.activePack = pack;
         this.activeDimensionKey = packDimensionKey;
         this.seedOverride = seed;
+        this.immutablePackRoot = packRoot == null ? null : packRoot.toAbsolutePath().normalize();
+        this.generationMode = Objects.requireNonNull(generationMode, "generationMode");
         this.engine = null;
         this.boundLevel = null;
         this.configuredStructureBiomeKeys = null;
@@ -272,7 +336,13 @@ public final class IrisModdedChunkGenerator extends ChunkGenerator {
     }
 
     public synchronized void resetToDefault() {
-        repoint(defaultPack, defaultDimensionKey, Long.MIN_VALUE);
+        repoint(
+                defaultPack,
+                defaultDimensionKey,
+                Long.MIN_VALUE,
+                null,
+                ModdedGenerationMode.PERSISTENT_RESTORE
+        );
     }
 
     public String activePack() {
@@ -312,7 +382,12 @@ public final class IrisModdedChunkGenerator extends ChunkGenerator {
                                                                      BlockPos pos, int radius,
                                                                      boolean findUnexplored) {
         Engine current = engine();
-        try (GenerationSessionLease lease = requireGenerationLease(current, "modded_structure_locate");
+        int chunkX = Math.floorDiv(pos.getX(), 16);
+        int chunkZ = Math.floorDiv(pos.getZ(), 16);
+        try (GenerationHistoryRuntimeRouter.RuntimeRoute route = openHistoryRoute(
+                     current, chunkX, chunkZ, "modded_structure_locate");
+             GenerationHistoryRuntimeRouter.RuntimeRoute.RuntimeScope runtimeScope = openHistoryRuntimeScope(route);
+             GenerationSessionLease lease = requireGenerationLease(current, "modded_structure_locate");
              IrisContext.Scope ignored = IrisContext.open(current, lease.sessionId(), null)) {
             HolderSet<Structure> reachable = nativeStructures.filterReachableNativeStructures(
                     level, holders, current);
@@ -481,14 +556,22 @@ public final class IrisModdedChunkGenerator extends ChunkGenerator {
                 return existing;
             }
             try {
-                Engine created = ModdedWorldEngines.get(level, activePack, activeDimensionKey, seedOverride);
+                Engine created = ModdedWorldEngines.get(
+                        level,
+                        activePack,
+                        activeDimensionKey,
+                        seedOverride,
+                        generationMode
+                );
                 requireCompletedShutdown(created);
                 if (created.isClosed() || created.getComplex() == null) {
                     throw new IllegalStateException("Iris generator '" + dimensionKey
                             + "' created an engine without a ready biome complex");
                 }
                 engine = created;
+                bindGenerationRuntimeRetirementListener(created);
                 boundLevel = level;
+                immutablePackRoot = created.getData().getDataFolder().toPath().toAbsolutePath().normalize();
                 heightMetadata = engineHeights(created);
                 configuredStructureBiomeKeys = null;
                 structureBiomeSource.clearCaches();
@@ -649,10 +732,14 @@ public final class IrisModdedChunkGenerator extends ChunkGenerator {
             }
             Engine current = engine;
             if (current != null && !current.isClosed() && !current.isClosing()) {
+                Set<String> retained = retainedBiomeKeys(current);
+                if (!retained.isEmpty()) {
+                    configuredStructureBiomeKeys = retained;
+                    return retained;
+                }
                 try (GenerationSessionLease lease = current.acquireGenerationLease("modded_configured_biome_keys");
                      IrisContext.Scope ignored = IrisContext.open(current, lease.sessionId(), null)) {
-                    Set<String> resolved = ModdedDimensionMetadata.collectConfiguredBiomeKeys(
-                            current.getAllBiomes(), current.getDimension().getLoadKey());
+                    Set<String> resolved = ModdedDimensionMetadata.collectConfiguredBiomeKeys(current);
                     configuredStructureBiomeKeys = resolved;
                     return resolved;
                 } catch (GenerationSessionException e) {
@@ -669,6 +756,27 @@ public final class IrisModdedChunkGenerator extends ChunkGenerator {
         }
     }
 
+    static Set<String> retainedBiomeKeys(Engine engine) {
+        if (!(engine instanceof IrisEngine irisEngine)) {
+            return Set.of();
+        }
+        GenerationHistoryRuntimeRouter router = irisEngine.getGenerationHistoryRuntimeRouter().orElse(null);
+        if (router == null) {
+            return Set.of();
+        }
+        LinkedHashSet<String> keys = new LinkedHashSet<>();
+        Collection<GenerationEpoch> epochs = router.history().manifest().epochs();
+        for (GenerationEpoch epoch : epochs) {
+            GenerationRegistryContract contract = epoch.registryContract();
+            for (GenerationRegistryContract.PhysicalResourceKey key : contract.definitions().keySet()) {
+                if (GenerationRegistryContractFactory.BIOME_REGISTRY.equals(key.registryKey())) {
+                    keys.add(key.resourceKey());
+                }
+            }
+        }
+        return Set.copyOf(keys);
+    }
+
     private static ModdedDimensionMetadata.DimensionMetadata engineHeights(Engine engine) {
         IrisDimension dimension = engine.getDimension();
         int minY = engine.getMinHeight();
@@ -713,8 +821,15 @@ public final class IrisModdedChunkGenerator extends ChunkGenerator {
             if (configuredPack != null) {
                 return configuredPack;
             }
-            PackValidationRegistry.requireLoadable(activePack);
-            File packDirectory = ModdedWorldEngines.resolvePack(activePack, activeDimensionKey);
+            Path packRoot = immutablePackRoot;
+            File packDirectory;
+            if (packRoot == null) {
+                PackValidationRegistry.requireLoadable(activePack);
+                packDirectory = ModdedWorldEngines.resolvePack(activePack, activeDimensionKey);
+            } else {
+                PackValidationRegistry.requireLoadable(packRoot);
+                packDirectory = packRoot.toFile();
+            }
             IrisData data = IrisData.get(packDirectory);
             IrisDimension dimension = data.getDimensionLoader().load(activeDimensionKey);
             if (dimension == null) {
@@ -800,36 +915,54 @@ public final class IrisModdedChunkGenerator extends ChunkGenerator {
     @Override
     public WeightedList<MobSpawnSettings.SpawnerData> getMobsAt(
             Holder<Biome> biome, StructureManager structureManager, MobCategory category, BlockPos pos) {
-        WeightedList<MobSpawnSettings.SpawnerData> explicitSpawns = biome.value().getMobSettings().getMobs(category);
-        WeightedList<MobSpawnSettings.SpawnerData> resolvedSpawns = super.getMobsAt(
-                biome, structureManager, category, pos);
-        if (resolvedSpawns != explicitSpawns) {
-            return resolvedSpawns;
-        }
+        Engine current = engine();
+        try (GenerationHistoryRuntimeRouter.CoordinateScope historyScope = openHistoryCoordinateScope(
+                     current, pos.getX(), pos.getZ(), "modded_mob_spawn_table");
+             GenerationSessionLease lease = requireGenerationLease(current, "modded_mob_spawn_table");
+             IrisContext.Scope ignored = IrisContext.open(current, lease.sessionId(), null)) {
+            WeightedList<MobSpawnSettings.SpawnerData> explicitSpawns =
+                    biome.value().getMobSettings().getMobs(category);
+            WeightedList<MobSpawnSettings.SpawnerData> resolvedSpawns = super.getMobsAt(
+                    biome, structureManager, category, pos);
+            if (resolvedSpawns != explicitSpawns) {
+                return resolvedSpawns;
+            }
 
-        Registry<Biome> registry = structureManager.registryAccess().lookupOrThrow(Registries.BIOME);
-        spawnTables.initializeVanillaSpawnBiomes(registry);
-        Holder<Biome> vanillaSpawnBiome = spawnTables.vanillaSpawnBiome(biome.value());
-        if (vanillaSpawnBiome == null) {
-            return explicitSpawns;
-        }
+            Registry<Biome> registry = structureManager.registryAccess().lookupOrThrow(Registries.BIOME);
+            spawnTables.initializeVanillaSpawnBiomes(registry);
+            Holder<Biome> vanillaSpawnBiome = spawnTables.vanillaSpawnBiome(biome.value());
+            if (vanillaSpawnBiome == null) {
+                return explicitSpawns;
+            }
 
-        WeightedList<MobSpawnSettings.SpawnerData> vanillaSpawns = vanillaSpawnBiome.value().getMobSettings().getMobs(category);
-        if (explicitSpawns.isEmpty()) {
-            return vanillaSpawns;
-        }
-        if (vanillaSpawns.isEmpty()) {
-            return explicitSpawns;
-        }
+            WeightedList<MobSpawnSettings.SpawnerData> vanillaSpawns =
+                    vanillaSpawnBiome.value().getMobSettings().getMobs(category);
+            if (explicitSpawns.isEmpty()) {
+                return vanillaSpawns;
+            }
+            if (vanillaSpawns.isEmpty()) {
+                return explicitSpawns;
+            }
 
-        return spawnTables.mergedSpawnTable(biome.value(), category, vanillaSpawns, explicitSpawns);
+            return spawnTables.mergedSpawnTable(
+                    current,
+                    biome.value(),
+                    category,
+                    vanillaSpawns,
+                    explicitSpawns
+            );
+        }
     }
 
     @Override
     public CompletableFuture<ChunkAccess> createBiomes(RandomState randomState, Blender blender,
                                                        StructureManager structureManager, ChunkAccess chunk) {
         Engine current = engine();
-        try (GenerationSessionLease lease = requireGenerationLease(current, "modded_create_biomes");
+        ChunkPos chunkPos = chunk.getPos();
+        try (GenerationHistoryRuntimeRouter.RuntimeRoute route = openHistoryRoute(
+                     current, chunkPos.x(), chunkPos.z(), "modded_create_biomes");
+             GenerationHistoryRuntimeRouter.RuntimeRoute.RuntimeScope runtimeScope = openHistoryRuntimeScope(route);
+             GenerationSessionLease lease = requireGenerationLease(current, "modded_create_biomes");
              IrisContext.Scope ignored = IrisContext.open(current, lease.sessionId(), null)) {
             chunk.fillBiomesFromNoise(structureBiomeSource::getVisibleNoiseBiome, randomState.sampler());
             return CompletableFuture.completedFuture(chunk);
@@ -844,19 +977,35 @@ public final class IrisModdedChunkGenerator extends ChunkGenerator {
         ModdedIrisLog.debug("Iris generating chunk {},{}", pos.x(), pos.z());
 
         PlatformBlockState air = IrisPlatforms.get().registries().air();
+        GenerationHistoryRuntimeRouter.RuntimeRoute route = openHistoryRoute(
+                generationEngine, pos.x(), pos.z(), "modded_chunk_pipeline");
 
-        if (ModdedGenPool.parallelChunkSystem()) {
-            return CompletableFuture.completedFuture(
-                    generateTerrain(chunk, generationEngine, pos, air));
+        try {
+            if (ModdedGenPool.parallelChunkSystem()) {
+                try {
+                    return CompletableFuture.completedFuture(
+                            generateTerrain(chunk, generationEngine, pos, air, route));
+                } finally {
+                    if (route != null) {
+                        route.close();
+                    }
+                }
+            }
+            CompletableFuture<ChunkAccess> pipeline = CompletableFuture.supplyAsync(
+                    () -> generateTerrain(chunk, generationEngine, pos, air, route),
+                    ModdedGenPool.pool());
+            return closeRouteOnCompletion(pipeline, route);
+        } catch (RuntimeException | Error failure) {
+            closeHistoryRoute(route, failure);
+            throw failure;
         }
-        return CompletableFuture.supplyAsync(
-                () -> generateTerrain(chunk, generationEngine, pos, air),
-                ModdedGenPool.pool());
     }
 
     private ChunkAccess generateTerrain(ChunkAccess chunk, Engine generationEngine, ChunkPos pos,
-                                        PlatformBlockState air) {
-        try (GenerationSessionLease lease = generationEngine.acquireGenerationLease("modded_chunk_pipeline");
+                                        PlatformBlockState air,
+                                        GenerationHistoryRuntimeRouter.RuntimeRoute route) {
+        try (GenerationHistoryRuntimeRouter.RuntimeRoute.RuntimeScope runtimeScope = openHistoryRuntimeScope(route);
+             GenerationSessionLease lease = generationEngine.acquireGenerationLease("modded_chunk_pipeline");
              IrisContext.Scope ignored = IrisContext.open(generationEngine, lease.sessionId(), null)) {
             if (announced.compareAndSet(false, true)) {
                 ModdedIrisLog.info("Iris generating {} through IrisModdedChunkGenerator (dim={} first chunk {},{})",
@@ -875,6 +1024,9 @@ public final class IrisModdedChunkGenerator extends ChunkGenerator {
                     Heightmap.Types.MOTION_BLOCKING,
                     Heightmap.Types.MOTION_BLOCKING_NO_LEAVES));
             ModdedWorldManager.enqueueGenerated(generationEngine, pos.x(), pos.z());
+            if (route != null) {
+                route.claimGeneratedSemantics();
+            }
             return chunk;
         } catch (GenerationSessionException e) {
             if (generationEngine.isClosing() || e.isExpectedTeardown()) {
@@ -890,6 +1042,67 @@ public final class IrisModdedChunkGenerator extends ChunkGenerator {
         }
     }
 
+    private static CompletableFuture<ChunkAccess> closeRouteOnCompletion(
+            CompletableFuture<ChunkAccess> pipeline,
+            GenerationHistoryRuntimeRouter.RuntimeRoute route
+    ) {
+        if (route == null) {
+            return pipeline;
+        }
+        CompletableFuture<ChunkAccess> completion = new CompletableFuture<>();
+        pipeline.whenComplete((ChunkAccess chunk, Throwable failure) -> {
+            boolean cancelled = isCancellationFailure(failure);
+            Throwable completionFailure = failure;
+            try {
+                route.close();
+            } catch (Throwable closeFailure) {
+                completionFailure = appendFailure(completionFailure, closeFailure);
+            }
+            if (completionFailure == null) {
+                completion.complete(chunk);
+            } else if (cancelled) {
+                completion.cancel(false);
+            } else {
+                completion.completeExceptionally(completionFailure);
+            }
+        });
+        return completion;
+    }
+
+    private static void closeHistoryRoute(
+            GenerationHistoryRuntimeRouter.RuntimeRoute route,
+            Throwable failure
+    ) {
+        if (route == null) {
+            return;
+        }
+        try {
+            route.close();
+        } catch (Throwable closeFailure) {
+            if (failure != closeFailure) {
+                failure.addSuppressed(closeFailure);
+            }
+        }
+    }
+
+    private static Throwable appendFailure(Throwable failure, Throwable closeFailure) {
+        if (failure == null) {
+            return closeFailure;
+        }
+        if (failure != closeFailure) {
+            failure.addSuppressed(closeFailure);
+        }
+        return failure;
+    }
+
+    private static boolean isCancellationFailure(Throwable failure) {
+        Throwable current = failure;
+        while (current instanceof CompletionException && current.getCause() != null) {
+            current = current.getCause();
+        }
+        return current instanceof CancellationException;
+    }
+
     private void writeTerrainHeightmaps(ChunkAccess chunk, Engine generationEngine, ChunkPos pos, int height) {
         int baseX = pos.getMinBlockX();
         int baseZ = pos.getMinBlockZ();
@@ -961,18 +1174,47 @@ public final class IrisModdedChunkGenerator extends ChunkGenerator {
 
     @Override
     public void applyCarvers(WorldGenRegion region, long seed, RandomState randomState, BiomeManager biomeManager, StructureManager structureManager, ChunkAccess chunk) {
+        Engine current = engine(region.getLevel());
+        ChunkPos chunkPos = chunk.getPos();
+        try (GenerationHistoryRuntimeRouter.RuntimeRoute route = openHistoryRoute(
+                     current, chunkPos.x(), chunkPos.z(), "modded_apply_carvers");
+             GenerationHistoryRuntimeRouter.RuntimeRoute.RuntimeScope runtimeScope = openHistoryRuntimeScope(route);
+             GenerationSessionLease lease = requireGenerationLease(current, "modded_apply_carvers");
+             IrisContext.Scope ignored = IrisContext.open(current, lease.sessionId(), null)) {
+        }
     }
 
     @Override
     public void buildSurface(WorldGenRegion region, StructureManager structureManager, RandomState randomState, ChunkAccess chunk) {
+        Engine current = engine(region.getLevel());
+        ChunkPos chunkPos = chunk.getPos();
+        try (GenerationHistoryRuntimeRouter.RuntimeRoute route = openHistoryRoute(
+                     current, chunkPos.x(), chunkPos.z(), "modded_build_surface");
+             GenerationHistoryRuntimeRouter.RuntimeRoute.RuntimeScope runtimeScope = openHistoryRuntimeScope(route);
+             GenerationSessionLease lease = requireGenerationLease(current, "modded_build_surface");
+             IrisContext.Scope ignored = IrisContext.open(current, lease.sessionId(), null)) {
+        }
     }
 
     @Override
     public void applyBiomeDecoration(WorldGenLevel level, ChunkAccess chunk, StructureManager structureManager) {
-        Engine current = engine();
-        importedFeatures.prepare(current);
-        try (GenerationSessionLease lease = requireGenerationLease(current, "modded_biome_decoration");
+        Engine current = engine(level.getLevel());
+        ChunkPos chunkPos = chunk.getPos();
+        try (GenerationHistoryRuntimeRouter.RuntimeRoute route = openHistoryRoute(
+                     current, chunkPos.x(), chunkPos.z(), "modded_biome_decoration");
+             GenerationHistoryRuntimeRouter.RuntimeRoute.RuntimeScope runtimeScope = openHistoryRuntimeScope(route);
+             GenerationSessionLease lease = requireGenerationLease(current, "modded_biome_decoration");
              IrisContext.Scope ignored = IrisContext.open(current, lease.sessionId(), null)) {
+            if (!allowsRoutedDiscreteGeneration(
+                    current,
+                    route,
+                    chunkPos,
+                    chunk,
+                    ChunkStatus.FEATURES
+            )) {
+                return;
+            }
+            importedFeatures.prepare(current);
             nativeStructures.placeVanillaStructures(level, chunk, structureManager);
             // Vanilla's placed-feature pass, on THIS thread and never on ModdedGenPool: the FEATURES chunk
             // step writes into the eight neighbouring chunks and is not parallel-safe. Inert unless the
@@ -984,8 +1226,21 @@ public final class IrisModdedChunkGenerator extends ChunkGenerator {
     @Override
     public void createStructures(RegistryAccess registryAccess, ChunkGeneratorStructureState structureState, StructureManager structureManager, ChunkAccess chunk, StructureTemplateManager templateManager, ResourceKey<Level> levelKey) {
         Engine current = engine(levelKey);
-        try (GenerationSessionLease lease = requireGenerationLease(current, "modded_create_structures");
+        ChunkPos chunkPos = chunk.getPos();
+        try (GenerationHistoryRuntimeRouter.RuntimeRoute route = openHistoryRoute(
+                     current, chunkPos.x(), chunkPos.z(), "modded_create_structures");
+             GenerationHistoryRuntimeRouter.RuntimeRoute.RuntimeScope runtimeScope = openHistoryRuntimeScope(route);
+             GenerationSessionLease lease = requireGenerationLease(current, "modded_create_structures");
              IrisContext.Scope ignored = IrisContext.open(current, lease.sessionId(), null)) {
+            if (!allowsRoutedDiscreteGeneration(
+                    current,
+                    route,
+                    chunkPos,
+                    chunk,
+                    ChunkStatus.STRUCTURE_STARTS
+            )) {
+                return;
+            }
             Map<Structure, StructureStart> previousStarts = new HashMap<>(chunk.getAllStarts());
             super.createStructures(registryAccess, structureState, structureManager, chunk, templateManager, levelKey);
             Map<Structure, NativeStructureStartPlan> configuredStarts = NativeStructureStartInjector.inject(
@@ -1008,7 +1263,11 @@ public final class IrisModdedChunkGenerator extends ChunkGenerator {
     @Override
     public void createReferences(WorldGenLevel level, StructureManager structureManager, ChunkAccess chunk) {
         Engine current = engine(level.getLevel());
-        try (GenerationSessionLease lease = requireGenerationLease(current, "modded_create_references");
+        ChunkPos chunkPos = chunk.getPos();
+        try (GenerationHistoryRuntimeRouter.RuntimeRoute route = openHistoryRoute(
+                     current, chunkPos.x(), chunkPos.z(), "modded_create_references");
+             GenerationHistoryRuntimeRouter.RuntimeRoute.RuntimeScope runtimeScope = openHistoryRuntimeScope(route);
+             GenerationSessionLease lease = requireGenerationLease(current, "modded_create_references");
              IrisContext.Scope ignored = IrisContext.open(current, lease.sessionId(), null)) {
             NativeStructureReferenceRepair.createReferences(
                     current, level, structureManager, chunk);
@@ -1021,25 +1280,42 @@ public final class IrisModdedChunkGenerator extends ChunkGenerator {
 
     @Override
     public void spawnOriginalMobs(WorldGenRegion region) {
-        Registry<Biome> registry = region.registryAccess().lookupOrThrow(Registries.BIOME);
-        spawnTables.initializeVanillaSpawnBiomes(registry);
         ChunkPos center = region.getCenter();
-        Holder<Biome> visibleBiome;
-        if (engine == null || engine.getDimensionStackContext() == null) {
-            visibleBiome = region.getBiome(center.getWorldPosition().atY(region.getMaxY()));
-        } else {
-            visibleBiome = structureBiomeSource.getVisibleSurfaceBiome(
-                    center.getMinBlockX() + 8,
-                    center.getMinBlockZ() + 8);
-            if (visibleBiome == null) {
-                visibleBiome = region.getBiome(center.getWorldPosition().atY(region.getMaxY()));
+        Engine current = engine(region.getLevel());
+        try (GenerationHistoryRuntimeRouter.RuntimeRoute route = openHistoryRoute(
+                     current, center.x(), center.z(), "modded_spawn_original_mobs");
+             GenerationHistoryRuntimeRouter.RuntimeRoute.RuntimeScope runtimeScope = openHistoryRuntimeScope(route);
+             GenerationSessionLease lease = requireGenerationLease(current, "modded_spawn_original_mobs");
+             IrisContext.Scope ignored = IrisContext.open(current, lease.sessionId(), null)) {
+            ChunkAccess centerChunk = region.getChunk(center.x(), center.z());
+            if (!allowsRoutedDiscreteGeneration(
+                    current,
+                    route,
+                    center,
+                    centerChunk,
+                    ChunkStatus.SPAWN
+            )) {
+                return;
             }
+            Registry<Biome> registry = region.registryAccess().lookupOrThrow(Registries.BIOME);
+            spawnTables.initializeVanillaSpawnBiomes(registry);
+            Holder<Biome> visibleBiome;
+            if (current.getDimensionStackContext() == null) {
+                visibleBiome = region.getBiome(center.getWorldPosition().atY(region.getMaxY()));
+            } else {
+                visibleBiome = structureBiomeSource.getVisibleSurfaceBiome(
+                        center.getMinBlockX() + 8,
+                        center.getMinBlockZ() + 8);
+                if (visibleBiome == null) {
+                    visibleBiome = region.getBiome(center.getWorldPosition().atY(region.getMaxY()));
+                }
+            }
+            Holder<Biome> vanillaBiome = spawnTables.vanillaSpawnBiome(visibleBiome.value());
+            WorldgenRandom random = new WorldgenRandom(new LegacyRandomSource(RandomSupport.generateUniqueSeed()));
+            random.setDecorationSeed(region.getSeed(), center.getMinBlockX(), center.getMinBlockZ());
+            NaturalSpawner.spawnMobsForChunkGeneration(
+                    region, vanillaBiome == null ? visibleBiome : vanillaBiome, center, random);
         }
-        Holder<Biome> vanillaBiome = spawnTables.vanillaSpawnBiome(visibleBiome.value());
-        WorldgenRandom random = new WorldgenRandom(new LegacyRandomSource(RandomSupport.generateUniqueSeed()));
-        random.setDecorationSeed(region.getSeed(), center.getMinBlockX(), center.getMinBlockZ());
-        NaturalSpawner.spawnMobsForChunkGeneration(
-                region, vanillaBiome == null ? visibleBiome : vanillaBiome, center, random);
     }
 
     @Override
@@ -1075,7 +1351,9 @@ public final class IrisModdedChunkGenerator extends ChunkGenerator {
     public int getBaseHeight(int x, int z, Heightmap.Types type, LevelHeightAccessor heightAccessor, RandomState randomState) {
         Engine current = requireDataQueryEngine("base height");
         boolean ignoreFluid = !type.isOpaque().test(Blocks.WATER.defaultBlockState());
-        try (GenerationSessionLease lease = current.acquireGenerationLease("modded_base_height");
+        try (GenerationHistoryRuntimeRouter.CoordinateScope historyScope = openHistoryCoordinateScope(
+                     current, x, z, "modded_base_height");
+             GenerationSessionLease lease = current.acquireGenerationLease("modded_base_height");
              IrisContext.Scope ignored = IrisContext.open(current, lease.sessionId(), null)) {
             int height = current.getDimensionStackContext() == null
                     ? current.getHeight(x, z, ignoreFluid)
@@ -1091,7 +1369,9 @@ public final class IrisModdedChunkGenerator extends ChunkGenerator {
         int minY = heightAccessor.getMinY();
         BlockState[] states = new BlockState[heightAccessor.getHeight()];
         Engine current = requireDataQueryEngine("base column");
-        try (GenerationSessionLease lease = current.acquireGenerationLease("modded_base_column");
+        try (GenerationHistoryRuntimeRouter.CoordinateScope historyScope = openHistoryCoordinateScope(
+                     current, x, z, "modded_base_column");
+             GenerationSessionLease lease = current.acquireGenerationLease("modded_base_column");
              IrisContext.Scope ignored = IrisContext.open(current, lease.sessionId(), null)) {
             BlockState airState = Blocks.AIR.defaultBlockState();
             boolean dimensionStack = current.getDimensionStackContext() != null;
@@ -1114,6 +1394,115 @@ public final class IrisModdedChunkGenerator extends ChunkGenerator {
         }
     }
 
+    private boolean allowsRoutedDiscreteGeneration(
+            Engine current,
+            GenerationHistoryRuntimeRouter.RuntimeRoute route,
+            ChunkPos chunkPos,
+            ChunkAccess chunk,
+            ChunkStatus stage
+    ) {
+        if (chunk.getPersistedStatus().isOrAfter(stage)) {
+            return false;
+        }
+        if (route == null) {
+            return allowsGenerationHistoryBypass(current);
+        }
+        return current.getComplex().allowsNewGenerationChunk(chunkPos.x(), chunkPos.z());
+    }
+
+    private void bindGenerationRuntimeRetirementListener(Engine current) {
+        if (!(current instanceof IrisEngine irisEngine)) {
+            unbindGenerationRuntimeRetirementListener();
+            return;
+        }
+        IrisEngine previous = retirementListenerEngine;
+        if (previous == irisEngine) {
+            return;
+        }
+        if (previous != null) {
+            previous.removeGenerationRuntimeRetirementListener(generationRuntimeRetirementListener);
+        }
+        irisEngine.addGenerationRuntimeRetirementListener(generationRuntimeRetirementListener);
+        retirementListenerEngine = irisEngine;
+    }
+
+    private void unbindGenerationRuntimeRetirementListener() {
+        IrisEngine previous = retirementListenerEngine;
+        if (previous == null) {
+            return;
+        }
+        retirementListenerEngine = null;
+        previous.removeGenerationRuntimeRetirementListener(generationRuntimeRetirementListener);
+    }
+
+    private void retireGenerationRuntimeCaches(int runtimeIdentity) {
+        structureBiomeSource.evictRuntime(runtimeIdentity);
+        importedFeatures.evictRuntime(runtimeIdentity);
+        spawnTables.evictRuntime(runtimeIdentity);
+    }
+
+    private GenerationHistoryRuntimeRouter.RuntimeRoute openHistoryRoute(
+            Engine current,
+            int chunkX,
+            int chunkZ,
+            String operation
+    ) {
+        if (allowsGenerationHistoryBypass(current)) {
+            return null;
+        }
+        GenerationHistoryRuntimeRouter router = requireHistoryRouter(current, operation);
+        try {
+            return router.openRoute(chunkX, chunkZ);
+        } catch (IOException failure) {
+            throw new IllegalStateException("Iris " + operation + " could not route chunk "
+                    + chunkX + "," + chunkZ + " through generation history.", failure);
+        }
+    }
+
+    private GenerationHistoryRuntimeRouter.CoordinateScope openHistoryCoordinateScope(
+            Engine current,
+            int blockX,
+            int blockZ,
+            String operation
+    ) {
+        if (allowsGenerationHistoryBypass(current)) {
+            return null;
+        }
+        GenerationHistoryRuntimeRouter router = requireHistoryRouter(current, operation);
+        try {
+            return router.openCoordinateScope(blockX, blockZ);
+        } catch (IOException failure) {
+            throw new IllegalStateException("Iris " + operation + " could not route block "
+                    + blockX + "," + blockZ + " through generation history.", failure);
+        }
+    }
+
+    private GenerationHistoryRuntimeRouter requireHistoryRouter(Engine current, String operation) {
+        if (!(current instanceof IrisEngine irisEngine)) {
+            throw new IllegalStateException("Iris " + operation + " requires an IrisEngine runtime.");
+        }
+        return irisEngine.getGenerationHistoryRuntimeRouter().orElseThrow(() ->
+                new IllegalStateException("Iris " + operation
+                        + " requires an attached generation-history runtime router."));
+    }
+
+    boolean allowsGenerationHistoryBypass(Engine current) {
+        if (generationMode != ModdedGenerationMode.TRANSIENT_STUDIO) {
+            return false;
+        }
+        if (current instanceof IrisEngine irisEngine && irisEngine.isStudio()) {
+            return true;
+        }
+        throw new IllegalStateException("Only an explicitly transient Iris Studio engine may bypass "
+                + "generation-history routing.");
+    }
+
+    private static GenerationHistoryRuntimeRouter.RuntimeRoute.RuntimeScope openHistoryRuntimeScope(
+            GenerationHistoryRuntimeRouter.RuntimeRoute route
+    ) {
+        return route == null ? null : route.openRuntimeScope();
+    }
+
     GenerationSessionLease requireGenerationLease(Engine current, String operation) {
         try {
             return current.acquireGenerationLease(operation);

adapters/modded-common/src/main/java/art/arcane/iris/modded/MainWorldService.java

@@ -142,6 +142,19 @@ public final class MainWorldService {
         }
     }
 
+    static Path configuredWorldRootIfPresent() throws IOException {
+        Path instanceRoot = Path.of("").toAbsolutePath().normalize();
+        Path properties = instanceRoot.resolve(PROPERTIES_NAME);
+        if (!Files.isRegularFile(properties)) {
+            return null;
+        }
+        try {
+            return resolveWorldRoot(instanceRoot, properties);
+        } catch (MissingWorldRootException missing) {
+            return null;
+        }
+    }
+
     /**
      * net.minecraft.server.Main reads server.properties as Paths.get("server.properties"), so the authoritative
      * instance root is the JVM working directory - not configDir().getParent(), which points somewhere else

adapters/modded-common/src/main/java/art/arcane/iris/modded/ModdedBiomeWriter.java

@@ -18,6 +18,9 @@
 
 package art.arcane.iris.modded;
 
+import art.arcane.iris.core.loader.IrisData;
+import art.arcane.iris.engine.DimensionStackContext;
+import art.arcane.iris.engine.DimensionTerrainContext;
 import art.arcane.iris.engine.framework.Engine;
 import art.arcane.iris.engine.object.IrisBiome;
 import art.arcane.iris.engine.object.IrisBiomeCustom;
@@ -33,6 +36,7 @@ import net.minecraft.world.level.biome.Biome;
 
 import java.util.ArrayList;
 import java.util.List;
+import java.util.Locale;
 import java.util.concurrent.ConcurrentHashMap;
 import java.util.concurrent.atomic.AtomicBoolean;
 import java.util.function.Supplier;
@@ -98,11 +102,11 @@ public final class ModdedBiomeWriter implements PlatformBiomeWriter {
             return key;
         }
         Engine engine = context.getEngine();
-        String prefix = engine.getDimension().getCustomBiomeKeyPrefix();
-        if (!key.regionMatches(true, 0, prefix, 0, prefix.length())) {
-            return key;
+        BiomeOwner owner = findCustomBiomeOwner(engine, key);
+        if (owner != null) {
+            return owner.physicalKey();
         }
-        return ModdedWorldgenIds.biomeRef(engine, key.substring(prefix.length()));
+        return engine.getData().physicalBiomeResourceKey(engine.getDimension(), key);
     }
 
     @Override
@@ -139,31 +143,81 @@ public final class ModdedBiomeWriter implements PlatformBiomeWriter {
     }
 
     private int idForDerivative(Registry<Biome> registry, String key) {
-        IrisBiome owner = findCustomBiomeOwner(key);
+        BiomeOwner owner = findCustomBiomeOwner(key);
         if (owner == null) {
             return -1;
         }
-        String derivativeKey = owner.getVanillaDerivativeKey();
+        String derivativeKey = owner.biome().getVanillaDerivativeKey();
         if (derivativeKey == null) {
             return -1;
         }
         return idForKey(registry, derivativeKey);
     }
 
-    private IrisBiome findCustomBiomeOwner(String key) {
+    private BiomeOwner findCustomBiomeOwner(String key) {
         for (Engine engine : ModdedWorldEngines.activeEngines()) {
             if (engine == null || engine.isClosed()) {
                 continue;
             }
-            IrisDimension dimension = engine.getDimension();
-            for (IrisBiome biome : dimension.getAllBiomes(engine)) {
-                if (!biome.isCustom()) {
-                    continue;
-                }
-                for (IrisBiomeCustom custom : biome.getCustomDerivitives()) {
-                    if (key.equalsIgnoreCase(dimension.getCustomBiomeKey(custom.getId()))) {
-                        return biome;
-                    }
+            BiomeOwner owner = findCustomBiomeOwner(engine, key);
+            if (owner != null) {
+                return owner;
+            }
+        }
+        return null;
+    }
+
+    private BiomeOwner findCustomBiomeOwner(Engine engine, String key) {
+        IrisDimension hostDimension = engine.getDimension();
+        BiomeOwner owner = findCustomBiomeOwner(
+                hostDimension,
+                engine.getData(),
+                hostDimension.getAllBiomes(engine),
+                key
+        );
+        if (owner != null) {
+            return owner;
+        }
+        DimensionStackContext stackContext = engine.getDimensionStackContext();
+        if (stackContext == null) {
+            return null;
+        }
+        for (DimensionTerrainContext terrainContext : stackContext.getLayersBottomToTop()) {
+            if (terrainContext.isSelfReferencing()) {
+                continue;
+            }
+            IrisDimension dimension = terrainContext.getDimension();
+            owner = findCustomBiomeOwner(
+                    dimension,
+                    terrainContext.getData(),
+                    dimension.getAllBiomes(terrainContext),
+                    key
+            );
+            if (owner != null) {
+                return owner;
+            }
+        }
+        return null;
+    }
+
+    private BiomeOwner findCustomBiomeOwner(
+            IrisDimension dimension,
+            IrisData data,
+            Iterable<IrisBiome> biomes,
+            String key
+    ) {
+        for (IrisBiome biome : biomes) {
+            if (!biome.isCustom()) {
+                continue;
+            }
+            for (IrisBiomeCustom custom : biome.getCustomDerivitives()) {
+                String contractLogicalKey = dimension.getLoadKey().toLowerCase(Locale.ROOT)
+                        + ":" + custom.getId().toLowerCase(Locale.ROOT);
+                String physicalKey = data.customBiomeResourceKey(dimension, custom);
+                if (key.equalsIgnoreCase(dimension.getCustomBiomeKey(custom.getId()))
+                        || key.equalsIgnoreCase(contractLogicalKey)
+                        || key.equalsIgnoreCase(physicalKey)) {
+                    return new BiomeOwner(dimension, data, biome, physicalKey);
                 }
             }
         }
@@ -220,4 +274,7 @@ public final class ModdedBiomeWriter implements PlatformBiomeWriter {
             this.registry = registry;
         }
     }
+
+    private record BiomeOwner(IrisDimension dimension, IrisData data, IrisBiome biome, String physicalKey) {
+    }
 }

adapters/modded-common/src/main/java/art/arcane/iris/modded/ModdedDimensionManager.java

@@ -19,7 +19,9 @@
 package art.arcane.iris.modded;
 
 import art.arcane.iris.core.loader.IrisData;
+import art.arcane.iris.core.pack.PackValidationRegistry;
 import art.arcane.iris.engine.framework.Engine;
+import art.arcane.iris.engine.history.GenerationActivation;
 import art.arcane.iris.engine.object.IrisDimension;
 import net.minecraft.core.BlockPos;
 import net.minecraft.core.Holder;
@@ -47,9 +49,12 @@ import net.minecraft.world.level.storage.LevelStorageSource;
 import net.minecraft.world.level.storage.ServerLevelData;
 import net.minecraft.world.level.storage.WorldData;
 
-import java.io.File;
+import java.nio.file.Path;
 import java.util.ArrayList;
 import java.util.List;
+import java.util.Objects;
+import java.util.Optional;
+import java.util.OptionalLong;
 import java.util.Set;
 import java.util.UUID;
 import java.util.concurrent.CompletableFuture;
@@ -120,14 +125,76 @@ public final class ModdedDimensionManager {
         return generator.commandEngine();
     }
 
-    public static Handle create(MinecraftServer server, String dimensionId, String pack, String packDimensionKey, long seed) {
-        ModdedStartup.requirePackForWorldCreation(pack);
+    public static Handle createTransientStudio(
+            MinecraftServer server,
+            String dimensionId,
+            String pack,
+            String packDimensionKey,
+            long seed
+    ) {
+        return create(
+                server,
+                dimensionId,
+                pack,
+                packDimensionKey,
+                seed,
+                ModdedGenerationMode.TRANSIENT_STUDIO
+        );
+    }
+
+    static Handle restorePersistent(
+            MinecraftServer server,
+            String dimensionId,
+            String pack,
+            String packDimensionKey,
+            long seed
+    ) {
+        return create(
+                server,
+                dimensionId,
+                pack,
+                packDimensionKey,
+                seed,
+                ModdedGenerationMode.PERSISTENT_RESTORE
+        );
+    }
+
+    private static Handle create(
+            MinecraftServer server,
+            String dimensionId,
+            String pack,
+            String packDimensionKey,
+            long seed,
+            ModdedGenerationMode generationMode
+    ) {
         ModdedServerAccess serverAccess = requireAccess();
         synchronized (LOCK) {
             ResourceKey<Level> key = levelKey(dimensionId);
+            RuntimePack runtimePack = switch (generationMode) {
+                case TRANSIENT_STUDIO -> transientStudioPack(pack, packDimensionKey);
+                case PERSISTENT_CREATE -> persistentRuntimePack(
+                        ModdedGenerationHistoryStorage.createOrStage(
+                                server,
+                                key,
+                                pack,
+                                packDimensionKey,
+                                seed
+                        ),
+                        generationMode
+                );
+                case PERSISTENT_RESTORE -> persistentRuntimePack(
+                        ModdedGenerationHistoryStorage.restoreOrAdopt(
+                                server,
+                                key,
+                                pack,
+                                packDimensionKey,
+                                seed
+                        ),
+                        generationMode
+                );
+            };
             Handle existing = HANDLES.get(dimensionId);
             if (existing != null && serverAccess.hasLevel(server, key)) {
-                existing.generator().repointAndBind(existing.level(), pack, packDimensionKey, seed);
                 Handle refreshed = new Handle(dimensionId, pack, packDimensionKey, seed, existing.level(), existing.generator());
                 HANDLES.put(dimensionId, refreshed);
                 return refreshed;
@@ -138,14 +205,22 @@ public final class ModdedDimensionManager {
                     throw new IllegalStateException("Iris cannot inject dimension '" + dimensionId + "': a non-Iris level with that id is already loaded");
                 }
                 ModdedIrisLog.warn("Iris dimension '{}' is already present in the running server; reusing it", dimensionId);
-                generator.repointAndBind(present, pack, packDimensionKey, seed);
                 Handle handle = new Handle(dimensionId, pack, packDimensionKey, seed, present, generator);
                 HANDLES.put(dimensionId, handle);
                 return handle;
             }
 
             try {
-                Handle handle = inject(server, serverAccess, dimensionId, key, pack, packDimensionKey, seed);
+                Handle handle = inject(
+                        server,
+                        serverAccess,
+                        dimensionId,
+                        key,
+                        pack,
+                        packDimensionKey,
+                        seed,
+                        runtimePack
+                );
                 HANDLES.put(dimensionId, handle);
                 ModdedIrisLog.info("Iris injected runtime dimension '{}' (pack={} dim={} seed={})", dimensionId, pack, packDimensionKey, seed);
                 return handle;
@@ -157,28 +232,109 @@ public final class ModdedDimensionManager {
     }
 
     public static Handle createPersistent(MinecraftServer server, String dimensionId, String pack, String packDimensionKey, long seed) {
-        ModdedDimensionRegistryStore.PersistentDimension previous =
-                ModdedDimensionRegistryStore.get(server, dimensionId);
-        ModdedDimensionRegistryStore.put(server, new ModdedDimensionRegistryStore.PersistentDimension(dimensionId, pack, packDimensionKey, seed));
-        try {
-            return create(server, dimensionId, pack, packDimensionKey, seed);
-        } catch (Throwable e) {
+        synchronized (LOCK) {
+            ModdedDimensionRegistryStore.PersistentDimension previous =
+                    ModdedDimensionRegistryStore.get(server, dimensionId);
+            if (previous != null) {
+                throw new IllegalStateException("Iris dimension '" + dimensionId
+                        + "' already exists. Use the Iris world update command to stage a pack update.");
+            }
+            ModdedDimensionRegistryStore.put(server, new ModdedDimensionRegistryStore.PersistentDimension(
+                    dimensionId,
+                    pack,
+                    packDimensionKey,
+                    seed
+            ));
             try {
-                if (previous == null) {
+                return create(
+                        server,
+                        dimensionId,
+                        pack,
+                        packDimensionKey,
+                        seed,
+                        ModdedGenerationMode.PERSISTENT_CREATE
+                );
+            } catch (Throwable e) {
+                try {
                     ModdedDimensionRegistryStore.remove(server, dimensionId);
-                } else {
-                    ModdedDimensionRegistryStore.put(server, previous);
+                } catch (Throwable rollbackFailure) {
+                    e.addSuppressed(rollbackFailure);
                 }
-            } catch (Throwable rollbackFailure) {
-                e.addSuppressed(rollbackFailure);
+                if (e instanceof RuntimeException runtimeException) {
+                    throw runtimeException;
+                }
+                if (e instanceof Error fatalError) {
+                    throw fatalError;
+                }
+                throw new IllegalStateException("Iris runtime dimension injection failed for " + dimensionId, e);
             }
-            if (e instanceof RuntimeException runtimeException) {
-                throw runtimeException;
+        }
+    }
+
+    public static UpdateResult stagePersistentUpdate(
+            MinecraftServer server,
+            String dimensionId,
+            String pack,
+            String packDimensionKey
+    ) {
+        synchronized (LOCK) {
+            ModdedDimensionRegistryStore.PersistentDimension previous =
+                    ModdedDimensionRegistryStore.get(server, dimensionId);
+            if (previous == null) {
+                throw new IllegalStateException("Iris dimension '" + dimensionId
+                        + "' is not registered. Create it before staging an update.");
             }
-            if (e instanceof Error fatalError) {
-                throw fatalError;
+            ModdedDimensionRegistryStore.PersistentDimension updated =
+                    new ModdedDimensionRegistryStore.PersistentDimension(
+                            dimensionId,
+                            pack,
+                            packDimensionKey,
+                            previous.seed()
+                    );
+            ModdedDimensionRegistryStore.put(server, updated);
+            try {
+                ModdedGenerationHistoryStorage.ActivePack active =
+                        ModdedGenerationHistoryStorage.createOrStage(
+                                server,
+                                levelKey(dimensionId),
+                                pack,
+                                packDimensionKey,
+                                previous.seed()
+                        );
+                Optional<GenerationActivation> pending = active.history().pendingActivation();
+                long activeActivationId = active.history().activeActivation().activationId();
+                OptionalLong pendingActivationId = pending.isPresent()
+                        ? OptionalLong.of(pending.orElseThrow().activationId())
+                        : OptionalLong.empty();
+                UpdateResult result = new UpdateResult(
+                        pending.isPresent(),
+                        pending.isPresent(),
+                        activeActivationId,
+                        pendingActivationId
+                );
+                if (result.restartRequired()) {
+                    ModdedIrisLog.warn("Iris dimension '{}' staged generation activation {} from pack={}:{}. Restart the server to activate it.",
+                            dimensionId, pendingActivationId.orElseThrow(), pack, packDimensionKey);
+                } else {
+                    ModdedIrisLog.info("Iris dimension '{}' already uses pack={}:{}; no generation update was staged.",
+                            dimensionId, pack, packDimensionKey);
+                }
+                return result;
+            } catch (Throwable failure) {
+                try {
+                    ModdedDimensionRegistryStore.put(server, previous);
+                } catch (Throwable rollbackFailure) {
+                    failure.addSuppressed(rollbackFailure);
+                }
+                if (failure instanceof RuntimeException runtimeException) {
+                    throw runtimeException;
+                }
+                if (failure instanceof Error fatalError) {
+                    throw fatalError;
+                }
+                throw new IllegalStateException("Iris generation update staging failed for "
+                        + dimensionId + ".", failure);
             }
-            throw new IllegalStateException("Iris runtime dimension injection failed for " + dimensionId, e);
         }
     }
 
@@ -524,48 +680,47 @@ public final class ModdedDimensionManager {
         server.execute(task);
     }
 
-    private static Holder<DimensionType> resolveDimensionType(RegistryAccess registryAccess, String pack, String packDimensionKey) {
+    private static Holder<DimensionType> resolveDimensionType(
+            RegistryAccess registryAccess,
+            String pack,
+            String packDimensionKey,
+            RuntimePack runtimePack
+    ) {
         Registry<DimensionType> registry = registryAccess.lookupOrThrow(Registries.DIMENSION_TYPE);
-        IrisDimension dimension = loadPackDimension(pack, packDimensionKey);
-        String typeRef = ModdedWorldgenIds.dimensionTypeRef(pack, packDimensionKey);
+        String typeRef = runtimePack.dimensionTypeKey();
         ResourceKey<DimensionType> typeKey = ResourceKey.create(Registries.DIMENSION_TYPE, Identifier.parse(typeRef));
-        ModdedRuntimeRegistry.ensureCustomBiomes(registryAccess, dimension, pack);
-        ModdedRuntimeRegistry.ensureDimensionType(registry, typeKey, typeRef);
         return ModdedForcedDatapack.requireRegisteredDimensionType(
                 typeRef, registry.get(typeKey), pack, packDimensionKey);
     }
 
-    private static IrisDimension loadPackDimension(String pack, String packDimensionKey) {
-        try {
-            File packFolder = ModdedWorldEngines.packFolder(pack);
-            if (!packFolder.isDirectory()) {
-                throw new IllegalStateException("Iris pack directory is missing: " + packFolder.getAbsolutePath());
-            }
-            IrisDimension dimension = IrisData.get(packFolder).getDimensionLoader().load(packDimensionKey);
-            if (dimension == null) {
-                throw new IllegalStateException("Iris pack '" + pack
-                        + "' does not contain dimension '" + packDimensionKey + "'");
-            }
-            return dimension;
-        } catch (Throwable e) {
-            ModdedIrisLog.error("Iris could not load pack '{}' dimension '{}' for dimension type resolution",
-                    pack, packDimensionKey, e);
-            if (e instanceof Error fatalError) {
-                throw fatalError;
-            }
-            throw new IllegalStateException("Iris could not load pack '" + pack + "' dimension '"
-                    + packDimensionKey + "' for dimension type resolution", e);
-        }
-    }
-
-    private static Handle inject(MinecraftServer server, ModdedServerAccess serverAccess, String dimensionId, ResourceKey<Level> key, String pack, String packDimensionKey, long seed) {
+    private static Handle inject(
+            MinecraftServer server,
+            ModdedServerAccess serverAccess,
+            String dimensionId,
+            ResourceKey<Level> key,
+            String pack,
+            String packDimensionKey,
+            long seed,
+            RuntimePack runtimePack
+    ) {
         RegistryAccess registryAccess = server.registryAccess();
-        Holder<DimensionType> dimensionType = resolveDimensionType(registryAccess, pack, packDimensionKey);
+        Holder<DimensionType> dimensionType = resolveDimensionType(
+                registryAccess,
+                pack,
+                packDimensionKey,
+                runtimePack
+        );
         Holder<Biome> plains = registryAccess.lookupOrThrow(Registries.BIOME).getOrThrow(Biomes.PLAINS);
         FixedBiomeSource biomeSource = new FixedBiomeSource(plains);
         String generatorRef = pack.equals(packDimensionKey) ? pack : pack + ":" + packDimensionKey;
         IrisModdedChunkGenerator generator = new IrisModdedChunkGenerator(biomeSource, generatorRef);
-        generator.repoint(pack, packDimensionKey, seed);
+        generator.repoint(
+                pack,
+                runtimePack.dimensionKey(),
+                seed,
+                runtimePack.packRoot(),
+                runtimePack.generationMode()
+        );
         LevelStem stem = new LevelStem(dimensionType, generator);
 
         WorldData worldData = server.getWorldData();
@@ -681,6 +836,77 @@ public final class ModdedDimensionManager {
         return bound;
     }
 
+    private static RuntimePack persistentRuntimePack(
+            ModdedGenerationHistoryStorage.ActivePack active,
+            ModdedGenerationMode generationMode
+    ) {
+        return new RuntimePack(
+                active.packRoot(),
+                active.dimensionKey(),
+                active.dimensionContract().dimensionTypeKey(),
+                generationMode
+        );
+    }
+
+    private static RuntimePack transientStudioPack(String pack, String dimensionKey) {
+        ModdedStartup.requirePackForWorldCreation(pack);
+        Path packRoot = ModdedWorldEngines.resolvePack(pack, dimensionKey)
+                .toPath()
+                .toAbsolutePath()
+                .normalize();
+        PackValidationRegistry.requireLoadable(packRoot);
+        IrisData data = IrisData.openDatapackCompiler(packRoot.toFile());
+        try {
+            IrisDimension dimension = data.getDimensionLoader().load(dimensionKey, false);
+            if (dimension == null) {
+                throw new IllegalStateException("Transient Iris Studio pack does not contain dimension '"
+                        + dimensionKey + "'.");
+            }
+        } finally {
+            data.close();
+        }
+        return new RuntimePack(
+                packRoot,
+                dimensionKey,
+                ModdedWorldgenIds.dimensionTypeRef(pack, dimensionKey),
+                ModdedGenerationMode.TRANSIENT_STUDIO
+        );
+    }
+
+    private record RuntimePack(
+            Path packRoot,
+            String dimensionKey,
+            String dimensionTypeKey,
+            ModdedGenerationMode generationMode
+    ) {
+        private RuntimePack {
+            packRoot = Objects.requireNonNull(packRoot, "packRoot").toAbsolutePath().normalize();
+            dimensionKey = Objects.requireNonNull(dimensionKey, "dimensionKey");
+            dimensionTypeKey = Objects.requireNonNull(dimensionTypeKey, "dimensionTypeKey");
+            generationMode = Objects.requireNonNull(generationMode, "generationMode");
+        }
+    }
+
     public record Handle(String dimensionId, String pack, String packDimensionKey, long seed, ServerLevel level, IrisModdedChunkGenerator generator) {
     }
+
+    public record UpdateResult(
+            boolean pending,
+            boolean restartRequired,
+            long activeActivationId,
+            OptionalLong pendingActivationId
+    ) {
+        public UpdateResult {
+            pendingActivationId = Objects.requireNonNull(
+                    pendingActivationId,
+                    "pendingActivationId"
+            );
+            if (pending != pendingActivationId.isPresent()) {
+                throw new IllegalArgumentException("Pending update status must match the pending activation ID.");
+            }
+            if (restartRequired != pending) {
+                throw new IllegalArgumentException("A pending generation activation requires a restart.");
+            }
+        }
+    }
 }

adapters/modded-common/src/main/java/art/arcane/iris/modded/ModdedDimensionMetadata.java

@@ -19,6 +19,9 @@
 package art.arcane.iris.modded;
 
 import art.arcane.iris.core.loader.IrisData;
+import art.arcane.iris.engine.DimensionStackContext;
+import art.arcane.iris.engine.DimensionTerrainContext;
+import art.arcane.iris.engine.framework.Engine;
 import art.arcane.iris.engine.object.IrisBiome;
 import art.arcane.iris.engine.object.IrisBiomeCustom;
 import art.arcane.iris.engine.object.IrisDimension;
@@ -28,6 +31,7 @@ import net.minecraft.resources.Identifier;
 import java.util.LinkedHashSet;
 import java.util.Locale;
 import java.util.Set;
+import java.util.function.Function;
 
 final class ModdedDimensionMetadata {
     private ModdedDimensionMetadata() {
@@ -45,7 +49,10 @@ final class ModdedDimensionMetadata {
 
     static Set<String> collectConfiguredBiomeKeys(IrisDimension dimension, IrisData data) {
         LinkedHashSet<String> keys = new LinkedHashSet<>(
-                collectConfiguredBiomeKeys(dimension.getReachableBiomes(() -> data), dimension.getLoadKey()));
+                collectConfiguredBiomeKeys(
+                        dimension.getReachableBiomes(() -> data),
+                        customBiome -> data.customBiomeResourceKey(dimension, customBiome)
+                ));
         for (IrisRegion region : dimension.getAllRegions(() -> data)) {
             if (region == null) {
                 continue;
@@ -60,7 +67,27 @@ final class ModdedDimensionMetadata {
         return Set.copyOf(keys);
     }
 
-    static Set<String> collectConfiguredBiomeKeys(Iterable<IrisBiome> biomes, String dimensionLoadKey) {
+    static Set<String> collectConfiguredBiomeKeys(Engine engine) {
+        LinkedHashSet<String> keys = new LinkedHashSet<>(collectConfiguredBiomeKeys(
+                engine.getDimension(), engine.getData()));
+        DimensionStackContext stackContext = engine.getDimensionStackContext();
+        if (stackContext == null) {
+            return Set.copyOf(keys);
+        }
+        for (DimensionTerrainContext terrainContext : stackContext.getLayersBottomToTop()) {
+            if (terrainContext.isSelfReferencing()) {
+                continue;
+            }
+            keys.addAll(collectConfiguredBiomeKeys(
+                    terrainContext.getDimension(), terrainContext.getData()));
+        }
+        return Set.copyOf(keys);
+    }
+
+    static Set<String> collectConfiguredBiomeKeys(
+            Iterable<IrisBiome> biomes,
+            Function<IrisBiomeCustom, String> customBiomeKey
+    ) {
         LinkedHashSet<String> keys = new LinkedHashSet<>();
         for (IrisBiome irisBiome : biomes) {
             if (irisBiome == null) {
@@ -74,12 +101,19 @@ final class ModdedDimensionMetadata {
                 continue;
             }
             for (IrisBiomeCustom customBiome : irisBiome.getCustomDerivitives()) {
-                keys.add(IrisDimension.customBiomeKey(dimensionLoadKey, customBiome.getId()));
+                keys.add(customBiomeKey.apply(customBiome).toLowerCase(Locale.ROOT));
             }
         }
         return Set.copyOf(keys);
     }
 
+    static Set<String> collectConfiguredBiomeKeys(Iterable<IrisBiome> biomes, String dimensionLoadKey) {
+        return collectConfiguredBiomeKeys(
+                biomes,
+                customBiome -> IrisDimension.customBiomeKey(dimensionLoadKey, customBiome.getId())
+        );
+    }
+
     static int clampSpawnHeight(int minY, int height) {
         int minimum = minY + 1;
         int maximum = minY + height - 2;

adapters/modded-common/src/main/java/art/arcane/iris/modded/ModdedDimensionRegistryStore.java

@@ -53,6 +53,10 @@ public final class ModdedDimensionRegistryStore {
         return contents(file).dimensions();
     }
 
+    static List<PersistentDimension> loadWorldRoot(Path worldRoot) {
+        return load(storeFile(worldRoot));
+    }
+
     /**
      * Boot-safe load: a corrupt registry must not abort server start. The broken file is renamed aside so the
      * next write starts clean, and every id we can still recognise in the raw text is reported as lost.
@@ -232,7 +236,11 @@ public final class ModdedDimensionRegistryStore {
     }
 
     private static Path storeFile(MinecraftServer server) {
-        return server.getWorldPath(LevelResource.ROOT).resolve("iris").resolve(FILE_NAME);
+        return storeFile(server.getWorldPath(LevelResource.ROOT));
+    }
+
+    private static Path storeFile(Path worldRoot) {
+        return worldRoot.resolve("iris").resolve(FILE_NAME);
     }
 
     public record PersistentDimension(String id, String pack, String dimension, long seed) {

adapters/modded-common/src/main/java/art/arcane/iris/modded/ModdedDimensionStorage.java

@@ -19,6 +19,7 @@
 package art.arcane.iris.modded;
 
 import art.arcane.iris.engine.IrisEngineMantle;
+import art.arcane.iris.engine.history.GenerationHistoryPaths;
 import net.minecraft.resources.ResourceKey;
 import net.minecraft.server.MinecraftServer;
 import net.minecraft.world.level.Level;
@@ -38,7 +39,8 @@ public final class ModdedDimensionStorage {
             "region",
             "entities",
             "poi",
-            IrisEngineMantle.STORAGE_FOLDER_NAME
+            IrisEngineMantle.STORAGE_FOLDER_NAME,
+            GenerationHistoryPaths.IRIS_DIRECTORY_NAME
     );
 
     private ModdedDimensionStorage() {

adapters/modded-common/src/main/java/art/arcane/iris/modded/ModdedForcedDatapack.java

@@ -18,7 +18,7 @@
 
 package art.arcane.iris.modded;
 
-import art.arcane.iris.spi.IrisPlatforms;
+import art.arcane.iris.core.IrisDatapackCompiler;
 import art.arcane.iris.core.loader.IrisData;
 import art.arcane.iris.core.localization.IrisLanguage;
 import art.arcane.iris.core.localization.RuntimeUiMessages;
@@ -27,11 +27,25 @@ import art.arcane.iris.core.nms.datapack.IDataFixer;
 import art.arcane.iris.core.pack.PackDirectoryResolver;
 import art.arcane.iris.core.pack.PackValidationResult;
 import art.arcane.iris.core.pack.PackValidator;
+import art.arcane.iris.engine.history.GenerationEpoch;
+import art.arcane.iris.engine.history.GenerationHistory;
+import art.arcane.iris.engine.history.GenerationHistoryPaths;
+import art.arcane.iris.engine.history.GenerationRegistryContract;
+import art.arcane.iris.engine.history.GenerationRegistryContract.PhysicalResourceKey;
+import art.arcane.iris.engine.history.GenerationRegistryContractFactory;
+import art.arcane.iris.engine.object.IrisBiome;
+import art.arcane.iris.engine.object.IrisBiomeCustom;
+import art.arcane.iris.engine.object.IrisCustomBiomeAliasResolver;
 import art.arcane.iris.engine.object.IrisDimension;
 import art.arcane.iris.engine.object.IrisDimensionType;
+import art.arcane.iris.spi.IrisPlatforms;
 import art.arcane.volmlib.util.collection.KList;
 import art.arcane.volmlib.util.collection.KSet;
 import net.minecraft.network.chat.Component;
+import net.minecraft.core.registries.Registries;
+import net.minecraft.resources.Identifier;
+import net.minecraft.resources.ResourceKey;
+import net.minecraft.server.MinecraftServer;
 import net.minecraft.server.packs.PackLocationInfo;
 import net.minecraft.server.packs.PackSelectionConfig;
 import net.minecraft.server.packs.PackType;
@@ -39,25 +53,28 @@ import net.minecraft.server.packs.PathPackResources;
 import net.minecraft.server.packs.repository.Pack;
 import net.minecraft.server.packs.repository.PackSource;
 import net.minecraft.server.packs.repository.RepositorySource;
+import net.minecraft.world.level.Level;
+import net.minecraft.world.level.dimension.DimensionType;
+import net.minecraft.world.level.storage.LevelResource;
 
 import java.io.File;
 import java.io.IOException;
 import java.nio.charset.StandardCharsets;
-import java.nio.file.FileVisitResult;
 import java.nio.file.Files;
 import java.nio.file.Path;
-import java.nio.file.SimpleFileVisitor;
 import java.nio.file.StandardCopyOption;
-import java.nio.file.attribute.BasicFileAttributes;
 import java.security.MessageDigest;
 import java.security.NoSuchAlgorithmException;
 import java.util.ArrayList;
 import java.util.Comparator;
 import java.util.HexFormat;
 import java.util.LinkedHashMap;
+import java.util.LinkedHashSet;
 import java.util.List;
 import java.util.Map;
+import java.util.Objects;
 import java.util.Optional;
+import java.util.Set;
 import java.util.UUID;
 import java.util.concurrent.atomic.AtomicBoolean;
 import java.util.function.Consumer;
@@ -67,14 +84,10 @@ public final class ModdedForcedDatapack {
     private static final String PACK_ID = "iris_worldgen";
     private static final String PACK_FOLDER = "iris";
     private static final String HASH_FILE_NAME = "packs.hash";
-    // Bump this whenever the emitted datapack content changes for reasons the pack-directory hash cannot see.
-    // v2: custom biomes now inherit their vanilla derivative's biome tags, so every already-published pack has
-    // to regenerate once.
-    private static final String HASH_SALT = "iris-forced-datapack-v2";
+    private static final String HASH_SALT = "iris-forced-datapack-v3-content-addressed-biomes";
     private static final long PACKS_HASH_TTL_NANOS = 2_000_000_000L;
     private static final Object LOCK = new Object();
     private static final AtomicBoolean LOADED = new AtomicBoolean(false);
-    private static final AtomicBoolean STALE_SERVE_LOGGED = new AtomicBoolean(false);
     private static volatile PublishedState published;
     private static volatile HashMemo packsHashMemo;
 
@@ -119,11 +132,9 @@ public final class ModdedForcedDatapack {
                 reason = "no published pack";
             } else if (!hash.isEmpty() && !state.packsHash().equals(hash)) {
                 reason = "stale cache (hash changed)";
+            } else if (hash.isEmpty()) {
+                reason = "current registry inputs could not be verified";
             } else {
-                if (hash.isEmpty() && STALE_SERVE_LOGGED.compareAndSet(false, true)) {
-                    ModdedIrisLog.warn("Iris cannot hash the installed packs; serving the last generated forced datapack from {} unverified",
-                            state.directory());
-                }
                 try {
                     return requireReadablePack(state.directory());
                 } catch (RuntimeException unreadable) {
@@ -163,17 +174,7 @@ public final class ModdedForcedDatapack {
     }
 
     private static Pack buildPack() {
-        try {
-            return requireReadablePack(regenerate());
-        } catch (RuntimeException | Error generationFailure) {
-            Path lastKnownGood = packDirectory();
-            if (Files.isRegularFile(lastKnownGood.resolve("pack.mcmeta"))) {
-                ModdedIrisLog.error("Iris kept the last known-good generated datapack after regeneration failed",
-                        generationFailure);
-                return requireReadablePack(lastKnownGood);
-            }
-            throw generationFailure;
-        }
+        return requireReadablePack(regenerate());
     }
 
     private static Pack requireReadablePack(Path directory) {
@@ -263,7 +264,6 @@ public final class ModdedForcedDatapack {
             // Publish the hash this run was built from as the memo too: a memo captured before staging would
             // otherwise mismatch what was just published and send the next serve straight back into buildPack.
             packsHashMemo = new HashMemo(packsHash, System.nanoTime());
-            STALE_SERVE_LOGGED.set(false);
             return packDirectory();
         } catch (IOException | RuntimeException | Error failure) {
             try {
@@ -335,10 +335,6 @@ public final class ModdedForcedDatapack {
         return hash;
     }
 
-    /**
-     * Content hash over the installed packs: relative path, size and mtime of every regular file, plus the
-     * pack format and loader the generated datapack is shaped for.
-     */
     private static String packsHash() throws IOException {
         MessageDigest digest;
         try {
@@ -348,39 +344,13 @@ public final class ModdedForcedDatapack {
         }
         digest.update((HASH_SALT + '|' + ModdedEngineBootstrap.loader().platformName()
                 + '|' + DataVersion.getLatest().getPackFormat() + '\n').getBytes(StandardCharsets.UTF_8));
-        Path root = packsRoot();
-        if (Files.isDirectory(root)) {
-            List<String> entries = new ArrayList<>();
-            Files.walkFileTree(root, new SimpleFileVisitor<Path>() {
-                @Override
-                public FileVisitResult preVisitDirectory(Path directory, BasicFileAttributes attributes) {
-                    return !directory.equals(root)
-                            && PackDirectoryResolver.isHiddenName(directory.getFileName().toString())
-                            ? FileVisitResult.SKIP_SUBTREE
-                            : FileVisitResult.CONTINUE;
-                }
-
-                @Override
-                public FileVisitResult visitFile(Path file, BasicFileAttributes attributes) {
-                    if (attributes.isRegularFile()) {
-                        entries.add(root.relativize(file).toString().replace('\\', '/')
-                                + '|' + attributes.size() + '|' + attributes.lastModifiedTime().toMillis());
-                    }
-                    return FileVisitResult.CONTINUE;
-                }
-
-                @Override
-                public FileVisitResult visitFileFailed(Path file, IOException failure) {
-                    entries.add(root.relativize(file).toString().replace('\\', '/') + "|unreadable");
-                    return FileVisitResult.CONTINUE;
-                }
-            });
-            entries.sort(Comparator.naturalOrder());
-            for (String entry : entries) {
-                digest.update(entry.getBytes(StandardCharsets.UTF_8));
-                digest.update((byte) '\n');
-            }
-        }
+        String inputFingerprint = IrisDatapackCompiler.computeInputFingerprint(
+                compilationPackRoots(),
+                List.of(),
+                DataVersion.getLatest().get(),
+                false
+        );
+        digest.update(inputFingerprint.getBytes(StandardCharsets.UTF_8));
         return HexFormat.of().formatHex(digest.digest());
     }
 
@@ -390,10 +360,11 @@ public final class ModdedForcedDatapack {
 
         int packCount = 0;
         KList<String> presetIds = new KList<>();
-        File root = packsRoot().toFile();
-        List<File> packs = PackDirectoryResolver.listVisiblePackDirectoriesOrThrow(root);
-        for (File pack : packs) {
-            if (stagePack(pack, fixer, stagingDirectory, seenBiomes, presetIds)) {
+        Path worldRoot = worldRootOrNull();
+        Set<PackSelection> legacySelections = unadoptedSelections(worldRoot);
+        for (File pack : compilationPackRoots(worldRoot)) {
+            PackStageContext context = packStageContext(pack.toPath(), legacySelections);
+            if (stagePack(context, fixer, stagingDirectory, seenBiomes, presetIds)) {
                 packCount++;
             }
         }
@@ -414,19 +385,28 @@ public final class ModdedForcedDatapack {
         }
     }
 
-    private static boolean stagePack(File sourcePack, IDataFixer fixer, Path stagingDirectory,
+    private static boolean stagePack(PackStageContext context, IDataFixer fixer, Path stagingDirectory,
                                      Map<String, KSet<String>> seenBiomes,
                                      KList<String> presetIds) throws IOException {
+        File sourcePack = context.packRoot().toFile();
         PackValidationResult validation;
         try {
             validation = PackValidator.validateForDatapackBootstrap(sourcePack);
         } catch (Throwable validationFailure) {
+            if (context.required()) {
+                throw requiredPackFailure(context, "validation", validationFailure);
+            }
             ModdedIrisLog.error("Iris excluded pack '{}' from Create World because validation failed",
                     sourcePack.getName(), validationFailure);
             rethrowIfUnrecoverable(validationFailure);
             return false;
         }
         if (!validation.isLoadable()) {
+            if (context.required()) {
+                throw new IOException("Retained Iris generation pack at " + context.packRoot()
+                        + " has " + validation.getBlockingErrors().size()
+                        + " blocking validation error(s): " + validation.getBlockingErrors().getFirst());
+            }
             ModdedIrisLog.error("Iris excluded pack '{}' from Create World: {} blocking validation error(s); first error: {}",
                     sourcePack.getName(), validation.getBlockingErrors().size(),
                     validation.getBlockingErrors().getFirst());
@@ -441,8 +421,11 @@ public final class ModdedForcedDatapack {
         packFolders.add(packStagingDirectory.toFile());
         boolean installed;
         try {
-            installed = installPack(sourcePack, fixer, packFolders, packBiomes, packPresetIds);
+            installed = installPack(context, fixer, packFolders, packBiomes, packPresetIds);
         } catch (Throwable installationFailure) {
+            if (context.required()) {
+                throw requiredPackFailure(context, "datapack serialization", installationFailure);
+            }
             ModdedIrisLog.error("Iris excluded pack '{}' from Create World because datapack serialization failed",
                     sourcePack.getName(), installationFailure);
             rethrowIfUnrecoverable(installationFailure);
@@ -481,7 +464,7 @@ public final class ModdedForcedDatapack {
         }
     }
 
-    private static void mergeDirectory(Path sourceDirectory, Path destinationDirectory) throws IOException {
+    static void mergeDirectory(Path sourceDirectory, Path destinationDirectory) throws IOException {
         List<Path> entries = new ArrayList<>();
         try (Stream<Path> walk = Files.walk(sourceDirectory)) {
             walk.sorted(Comparator.comparingInt(Path::getNameCount)).forEach(entries::add);
@@ -490,9 +473,14 @@ public final class ModdedForcedDatapack {
             Path relative = sourceDirectory.relativize(source);
             Path destination = destinationDirectory.resolve(relative);
             if (Files.isDirectory(source)) {
+                if (Files.exists(destination) && !Files.isDirectory(destination)) {
+                    throw new IOException("Conflicting Iris datapack output at " + destination + ".");
+                }
                 Files.createDirectories(destination);
             } else if (!Files.exists(destination)) {
                 Files.copy(source, destination);
+            } else if (!Files.isRegularFile(destination) || Files.mismatch(source, destination) != -1L) {
+                throw new IOException("Conflicting Iris datapack output at " + destination + ".");
             }
         }
     }
@@ -505,37 +493,65 @@ public final class ModdedForcedDatapack {
         }
     }
 
-    private static boolean installPack(File packFolder, IDataFixer fixer, KList<File> folders,
+    private static boolean installPack(PackStageContext context, IDataFixer fixer, KList<File> folders,
                                        Map<String, KSet<String>> seenBiomes,
                                        KList<String> presetIds) throws IOException {
-        String packName = packFolder.getName();
+        File packFolder = context.packRoot().toFile();
+        String packName = context.packName();
         File dimensionsDirectory = new File(packFolder, "dimensions");
         if (!dimensionsDirectory.isDirectory()) {
             return false;
         }
-        IrisData data = IrisData.get(packFolder);
-        String[] dimensionKeys = data.getDimensionLoader().getPossibleKeys();
-        if (dimensionKeys == null || dimensionKeys.length == 0) {
-            return false;
-        }
-        List<String> sortedDimensionKeys = Stream.of(dimensionKeys).sorted().toList();
-        for (String dimensionKey : sortedDimensionKeys) {
-            IrisDimension dimension = data.getDimensionLoader().load(dimensionKey);
-            if (dimension == null) {
-                throw new IllegalStateException("Iris pack '" + packName + "' dimension '"
-                        + dimensionKey + "' did not load while building the forced datapack");
+        IrisData data = IrisData.openDatapackCompiler(packFolder);
+        try {
+            if (context.retainedContract() != null) {
+                data.bindGenerationRegistryContract(context.retainedContract());
             }
-            String biomePathPrefix = ModdedWorldgenIds.biomePathPrefix(packName, dimensionKey);
-            dimension.installBiomes(fixer, () -> data, folders, "irisworldgen", biomePathPrefix,
-                    biomesForNamespace(seenBiomes, biomePathPrefix));
-            dimension.installBiomes(fixer, () -> data, folders,
-                    biomesForNamespace(seenBiomes, dimension.getLoadKey()));
-            writeDimensionType(folders, fixer, dimension, packName, dimensionKey);
-            String presetRef = ModdedWorldgenIds.presetRef(packName, dimensionKey);
-            writeWorldPreset(folders, packName, dimensionKey, presetRef);
-            presetIds.add(presetRef);
+            String[] dimensionKeys = data.getDimensionLoader().getPossibleKeys();
+            if (dimensionKeys == null || dimensionKeys.length == 0) {
+                return false;
+            }
+            int installedDimensions = 0;
+            List<String> sortedDimensionKeys = Stream.of(dimensionKeys).sorted().toList();
+            for (String dimensionKey : sortedDimensionKeys) {
+                if (context.dimensionKey() != null && !context.dimensionKey().equals(dimensionKey)) {
+                    continue;
+                }
+                IrisDimension dimension = data.getDimensionLoader().load(dimensionKey);
+                if (dimension == null) {
+                    throw new IllegalStateException("Iris pack '" + packName + "' dimension '"
+                            + dimensionKey + "' did not load while building the forced datapack");
+                }
+                dimension.installBiomes(
+                        fixer,
+                        () -> data,
+                        folders,
+                        biomesForNamespace(seenBiomes, "iris"),
+                        context
+                );
+                writeDimensionType(
+                        folders,
+                        fixer,
+                        dimension,
+                        context.dimensionTypeRef(dimensionKey),
+                        context.emitLegacyDimensionTypeAlias(),
+                        context
+                );
+                if (context.emitPresets()) {
+                    String presetRef = ModdedWorldgenIds.presetRef(packName, dimensionKey);
+                    writeWorldPreset(folders, packName, dimensionKey, presetRef);
+                    presetIds.add(presetRef);
+                }
+                installedDimensions++;
+            }
+            if (context.required() && installedDimensions == 0) {
+                throw new IOException("Retained Iris generation pack at " + context.packRoot()
+                        + " does not contain dimension '" + context.dimensionKey() + "'.");
+            }
+            return installedDimensions > 0;
+        } finally {
+            data.close();
         }
-        return true;
     }
 
     static KSet<String> biomesForNamespace(Map<String, KSet<String>> biomes, String namespace) {
@@ -625,15 +641,41 @@ public final class ModdedForcedDatapack {
 
     static void writeDimensionType(KList<File> folders, IDataFixer fixer, IrisDimension dimension,
                                    String pack, String packDimensionKey) throws IOException {
+        writeDimensionType(
+                folders,
+                fixer,
+                dimension,
+                ModdedWorldgenIds.dimensionTypeRef(pack, packDimensionKey),
+                true,
+                IrisCustomBiomeAliasResolver.none()
+        );
+    }
+
+    private static void writeDimensionType(
+            KList<File> folders,
+            IDataFixer fixer,
+            IrisDimension dimension,
+            String typeRef,
+            boolean emitLegacyAlias,
+            IrisCustomBiomeAliasResolver sourceResolver
+    ) throws IOException {
         IrisDimensionType type = dimension.getDimensionType();
-        String json = type.toJson(fixer);
-        String typeRef = ModdedWorldgenIds.dimensionTypeRef(pack, packDimensionKey);
+        String json = Objects.requireNonNull(sourceResolver, "sourceResolver").generatedSource(
+                GenerationRegistryContractFactory.DIMENSION_TYPE_REGISTRY,
+                typeRef,
+                type.toJson(fixer),
+                fixer
+        );
         String typePath = typeRef.substring(typeRef.indexOf(':') + 1);
+        String typeNamespace = typeRef.substring(0, typeRef.indexOf(':'));
         for (File datapackRoot : folders) {
-            Path output = datapackRoot.toPath().resolve("data").resolve("irisworldgen")
+            Path output = datapackRoot.toPath().resolve("data").resolve(typeNamespace)
                     .resolve("dimension_type").resolve(typePath + ".json");
             Files.createDirectories(output.getParent());
             Files.writeString(output, json, StandardCharsets.UTF_8);
+            if (!emitLegacyAlias) {
+                continue;
+            }
             // Load-bearing, not dead: worlds created before the scoped pack path reference
             // irisworldgen:<dimensionTypeKey> in their level.dat, and ModdedWorldEngines accepts that legacy
             // key when validating the runtime dimension contract. Removing this emission unloads those worlds.
@@ -725,10 +767,239 @@ public final class ModdedForcedDatapack {
         }
     }
 
+    private static List<File> compilationPackRoots() throws IOException {
+        return compilationPackRoots(worldRootOrNull());
+    }
+
+    private static List<File> compilationPackRoots(Path worldRoot) throws IOException {
+        Path dataDirectory = packsRoot().getParent();
+        Path historyRoot = worldRoot == null
+                ? dataDirectory.resolve(".iris-world-unavailable")
+                : worldRoot;
+        return IrisDatapackCompiler.collectPackRoots(dataDirectory, historyRoot);
+    }
+
+    private static Path worldRootOrNull() throws IOException {
+        MinecraftServer server = ModdedEngineBootstrap.currentServer();
+        if (server != null) {
+            return server.getWorldPath(LevelResource.ROOT).toAbsolutePath().normalize();
+        }
+        if (ModdedEngineBootstrap.loader().clientEnvironment()) {
+            return null;
+        }
+        return MainWorldService.configuredWorldRootIfPresent();
+    }
+
+    private static Set<PackSelection> unadoptedSelections(Path worldRoot) throws IOException {
+        if (worldRoot == null) {
+            return Set.of();
+        }
+        Set<PackSelection> selections = new LinkedHashSet<>();
+        for (ModdedDimensionRegistryStore.PersistentDimension dimension
+                : ModdedDimensionRegistryStore.loadWorldRoot(worldRoot)) {
+            Identifier identifier = Identifier.tryParse(dimension.id());
+            if (identifier == null) {
+                throw new IOException("Invalid persistent Iris dimension ID '" + dimension.id() + "'.");
+            }
+            ResourceKey<Level> key = ResourceKey.create(Registries.DIMENSION, identifier);
+            Path dimensionRoot = DimensionType.getStorageFolder(key, worldRoot).toAbsolutePath().normalize();
+            Path generationRoot = GenerationHistoryPaths.forDimension(dimensionRoot).generationRoot();
+            if (!Files.exists(generationRoot)) {
+                selections.add(new PackSelection(dimension.pack(), dimension.dimension()));
+            }
+        }
+        return Set.copyOf(selections);
+    }
+
+    private static PackStageContext packStageContext(
+            Path packRoot,
+            Set<PackSelection> unadoptedSelections
+    ) throws IOException {
+        Path normalizedRoot = packRoot.toAbsolutePath().normalize();
+        RetainedPack retained = retainedPack(normalizedRoot);
+        if (retained != null) {
+            ModdedWorldgenIds.ScopedDimension identity = ModdedWorldgenIds
+                    .scopedDimensionType(retained.epoch().dimensionContract().dimensionTypeKey())
+                    .orElseThrow(() -> new IOException("Retained Iris dimension type key is not scoped: "
+                            + retained.epoch().dimensionContract().dimensionTypeKey()));
+            if (!identity.dimension().equals(retained.epoch().dimensionContract().dimensionKey())) {
+                throw new IOException("Retained Iris dimension type identity does not match its epoch contract.");
+            }
+            return PackStageContext.retained(normalizedRoot, identity.pack(), retained.epoch());
+        }
+
+        String packName = normalizedRoot.getFileName().toString();
+        Set<String> legacyDimensions = new LinkedHashSet<>();
+        for (PackSelection selection : unadoptedSelections) {
+            if (selection.pack().equals(packName)) {
+                legacyDimensions.add(selection.dimension());
+            }
+        }
+        return PackStageContext.installed(normalizedRoot, packName, legacyDimensions);
+    }
+
+    private static RetainedPack retainedPack(Path packRoot) throws IOException {
+        Path epochRoot = packRoot.getParent();
+        Path epochsRoot = epochRoot == null ? null : epochRoot.getParent();
+        Path generationRoot = epochsRoot == null ? null : epochsRoot.getParent();
+        Path irisRoot = generationRoot == null ? null : generationRoot.getParent();
+        Path dimensionRoot = irisRoot == null ? null : irisRoot.getParent();
+        if (epochRoot == null
+                || epochsRoot == null
+                || generationRoot == null
+                || irisRoot == null
+                || dimensionRoot == null
+                || !"pack".equals(packRoot.getFileName().toString())
+                || !GenerationHistoryPaths.EPOCHS_DIRECTORY_NAME.equals(epochsRoot.getFileName().toString())
+                || !GenerationHistoryPaths.GENERATION_DIRECTORY_NAME.equals(generationRoot.getFileName().toString())
+                || !GenerationHistoryPaths.IRIS_DIRECTORY_NAME.equals(irisRoot.getFileName().toString())) {
+            return null;
+        }
+        GenerationHistory history = GenerationHistory.open(dimensionRoot);
+        String epochId = epochRoot.getFileName().toString();
+        GenerationEpoch epoch = history.manifest().epoch(epochId).orElseThrow(
+                () -> new IOException("Retained Iris pack is not referenced by generation history: " + packRoot)
+        );
+        if (!history.paths().packRoot(epochId).toAbsolutePath().normalize().equals(packRoot)) {
+            throw new IOException("Retained Iris pack path does not match generation history: " + packRoot);
+        }
+        return new RetainedPack(history, epoch);
+    }
+
+    private static IOException requiredPackFailure(
+            PackStageContext context,
+            String operation,
+            Throwable failure
+    ) {
+        if (failure instanceof IOException ioFailure) {
+            return ioFailure;
+        }
+        return new IOException("Retained Iris generation pack at " + context.packRoot()
+                + " failed " + operation + ".", failure);
+    }
+
     private static Path packsRoot() {
         return IrisPlatforms.get().packsFolderNoCreate().toPath();
     }
 
+    private record PackSelection(String pack, String dimension) {
+    }
+
+    private record RetainedPack(GenerationHistory history, GenerationEpoch epoch) {
+    }
+
+    private record PackStageContext(
+            Path packRoot,
+            String packName,
+            String dimensionKey,
+            String retainedDimensionTypeRef,
+            boolean emitPresets,
+            boolean emitLegacyDimensionTypeAlias,
+            boolean required,
+            Set<String> legacyDimensions,
+            GenerationRegistryContract retainedContract
+    ) implements IrisCustomBiomeAliasResolver {
+        private static PackStageContext installed(
+                Path packRoot,
+                String packName,
+                Set<String> legacyDimensions
+        ) {
+            return new PackStageContext(
+                    packRoot,
+                    packName,
+                    null,
+                    null,
+                    true,
+                    true,
+                    false,
+                    Set.copyOf(legacyDimensions),
+                    null
+            );
+        }
+
+        private static PackStageContext retained(
+                Path packRoot,
+                String packName,
+                GenerationEpoch epoch
+        ) {
+            return new PackStageContext(
+                    packRoot,
+                    packName,
+                    epoch.dimensionContract().dimensionKey(),
+                    epoch.dimensionContract().dimensionTypeKey(),
+                    false,
+                    true,
+                    true,
+                    Set.of(),
+                    epoch.registryContract()
+            );
+        }
+
+        private String dimensionTypeRef(String installedDimensionKey) {
+            return retainedDimensionTypeRef == null
+                    ? ModdedWorldgenIds.dimensionTypeRef(packName, installedDimensionKey)
+                    : retainedDimensionTypeRef;
+        }
+
+        @Override
+        public String physicalResourceKey(
+                IrisDimension dimension,
+                IrisBiome biome,
+                IrisBiomeCustom customBiome,
+                String currentPhysicalResourceKey
+        ) throws IOException {
+            if (retainedContract == null) {
+                return currentPhysicalResourceKey;
+            }
+            return dimension.getLoader().customBiomeResourceKey(dimension, customBiome);
+        }
+
+        @Override
+        public List<String> aliases(
+                IrisDimension dimension,
+                IrisBiome biome,
+                IrisBiomeCustom customBiome,
+                String physicalResourceKey
+        ) {
+            List<String> candidates = ModdedWorldgenIds.legacyBiomeRefs(
+                    packName,
+                    dimension.getLoadKey(),
+                    customBiome.getId()
+            );
+            if (legacyDimensions.contains(dimension.getLoadKey())) {
+                return candidates;
+            }
+            if (retainedContract == null) {
+                return List.of();
+            }
+            List<String> aliases = new ArrayList<>(candidates.size());
+            for (String candidate : candidates) {
+                PhysicalResourceKey key = new PhysicalResourceKey(
+                        GenerationRegistryContractFactory.BIOME_REGISTRY,
+                        candidate
+                );
+                if (retainedContract.definitions().containsKey(key)) {
+                    aliases.add(candidate);
+                }
+            }
+            return List.copyOf(aliases);
+        }
+
+        @Override
+        public String generatedSource(
+                String registryKey,
+                String resourceKey,
+                String currentSource,
+                IDataFixer fixer
+        ) throws IOException {
+            if (retainedContract == null) {
+                return currentSource;
+            }
+            PhysicalResourceKey key = new PhysicalResourceKey(registryKey, resourceKey);
+            return GenerationRegistryContractFactory.requireGeneratedSource(retainedContract, key, fixer);
+        }
+    }
+
     private record PublishedState(Path directory, String packsHash) {
     }
 

adapters/modded-common/src/main/java/art/arcane/iris/modded/ModdedGenerationHistoryStorage.java

@@ -0,0 +1,361 @@
+package art.arcane.iris.modded;
+
+import art.arcane.iris.core.loader.IrisData;
+import art.arcane.iris.core.IrisSettings;
+import art.arcane.iris.core.pack.BrokenPackException;
+import art.arcane.iris.core.pack.PackValidationRegistry;
+import art.arcane.iris.core.pack.PackValidationResult;
+import art.arcane.iris.core.pack.PackValidator;
+import art.arcane.iris.engine.history.GenerationEpoch;
+import art.arcane.iris.engine.history.GenerationEpochContractFactory;
+import art.arcane.iris.engine.history.GenerationHistory;
+import art.arcane.iris.engine.history.GenerationPackFingerprint;
+import art.arcane.iris.engine.history.GenerationRegistryContract;
+import art.arcane.iris.engine.history.GenerationRegistryContractFactory;
+import art.arcane.iris.engine.object.IrisDimension;
+import art.arcane.iris.spi.IrisPlatforms;
+import art.arcane.iris.spi.PlatformGenerationRegistry;
+import net.minecraft.resources.ResourceKey;
+import net.minecraft.server.MinecraftServer;
+import net.minecraft.server.level.ServerLevel;
+import net.minecraft.world.level.Level;
+
+import java.io.File;
+import java.io.IOException;
+import java.nio.file.Files;
+import java.nio.file.Path;
+import java.util.ArrayList;
+import java.util.Collection;
+import java.util.List;
+import java.util.Objects;
+import java.util.Optional;
+
+final class ModdedGenerationHistoryStorage {
+    private ModdedGenerationHistoryStorage() {
+    }
+
+    static ActivePack createOrStage(
+            MinecraftServer server,
+            ResourceKey<Level> levelKey,
+            String selectedPack,
+            String selectedDimensionKey,
+            long worldSeed
+    ) {
+        Path dimensionRoot = dimensionRoot(server, levelKey);
+        try {
+            Path source = selectedPackSource(selectedPack, selectedDimensionKey);
+            Candidate candidate = captureCandidate(source, selectedDimensionKey);
+            GenerationHistory history = createOrStage(
+                    dimensionRoot,
+                    source,
+                    worldSeed,
+                    candidate,
+                    ModdedGenerationHistoryStorage::requireRegistryDefinitions,
+                    IrisSettings.get().getGenerator().getGenerationTransitionWidthBlocks()
+            );
+            return resolveActive(history);
+        } catch (IOException failure) {
+            throw historyFailure(levelKey, failure);
+        }
+    }
+
+    static ActivePack restoreOrAdopt(
+            MinecraftServer server,
+            ResourceKey<Level> levelKey,
+            String selectedPack,
+            String selectedDimensionKey,
+            long worldSeed
+    ) {
+        Path dimensionRoot = dimensionRoot(server, levelKey);
+        try {
+            GenerationHistory history = restoreOrAdopt(
+                    dimensionRoot,
+                    worldSeed,
+                    () -> {
+                        Path source = selectedPackSource(selectedPack, selectedDimensionKey);
+                        return new AdoptionSource(source, captureCandidate(
+                                source,
+                                selectedDimensionKey,
+                                GenerationRegistryContractFactory.CustomBiomeAliasPolicy.RETAIN_LEGACY_ALIASES
+                        ));
+                    },
+                    ModdedGenerationHistoryStorage::requireRegistryDefinitions
+            );
+            return resolveActive(history);
+        } catch (IOException failure) {
+            throw historyFailure(levelKey, failure);
+        }
+    }
+
+    static ActivePack openOrAdopt(
+            ServerLevel level,
+            String selectedPack,
+            String selectedDimensionKey,
+            long worldSeed
+    ) {
+        return restoreOrAdopt(
+                level.getServer(),
+                level.dimension(),
+                selectedPack,
+                selectedDimensionKey,
+                worldSeed
+        );
+    }
+
+    static GenerationHistory createOrStage(
+            Path dimensionRoot,
+            Path source,
+            long worldSeed,
+            Candidate candidate,
+            RegistryContractValidator validator,
+            int transitionWidthBlocks
+    ) throws IOException {
+        Path requiredRoot = normalize(dimensionRoot);
+        Path requiredSource = normalize(source);
+        Candidate requiredCandidate = Objects.requireNonNull(candidate, "candidate");
+        RegistryContractValidator requiredValidator = Objects.requireNonNull(validator, "validator");
+        Optional<GenerationHistory> existing = GenerationHistory.openIfPresent(requiredRoot, worldSeed);
+        if (existing.isEmpty()) {
+            captureAndRequireRegistryDefinitions(
+                    List.of(requiredCandidate.registryContract()),
+                    requiredValidator
+            );
+            Files.createDirectories(requiredRoot);
+            return GenerationHistory.create(
+                    requiredRoot,
+                    requiredSource,
+                    requiredCandidate.packFingerprint(),
+                    worldSeed,
+                    requiredCandidate.dimensionContract(),
+                    requiredCandidate.registryContract()
+            );
+        }
+
+        GenerationHistory history = existing.get();
+        captureAndRequireRegistryDefinitions(registryContracts(history), requiredValidator);
+        history.stageUpdate(
+                requiredSource,
+                requiredCandidate.packFingerprint(),
+                requiredCandidate.dimensionContract(),
+                requiredCandidate.registryContract(),
+                transitionWidthBlocks
+        );
+        return history;
+    }
+
+    static GenerationHistory restoreOrAdopt(
+            Path dimensionRoot,
+            long worldSeed,
+            AdoptionSourceSupplier sourceSupplier,
+            RegistryContractValidator validator
+    ) throws IOException {
+        Path requiredRoot = normalize(dimensionRoot);
+        RegistryContractValidator requiredValidator = Objects.requireNonNull(validator, "validator");
+        Optional<GenerationHistory> existing = GenerationHistory.openIfPresent(requiredRoot, worldSeed);
+        if (existing.isPresent()) {
+            requireRegistryDefinitions(existing.get(), requiredValidator);
+            return existing.get();
+        }
+
+        AdoptionSource adoption = Objects.requireNonNull(sourceSupplier, "sourceSupplier").get();
+        Candidate candidate = Objects.requireNonNull(adoption.candidate(), "candidate");
+        captureAndRequireRegistryDefinitions(List.of(candidate.registryContract()), requiredValidator);
+        Files.createDirectories(requiredRoot);
+        return GenerationHistory.create(
+                requiredRoot,
+                normalize(adoption.packSource()),
+                candidate.packFingerprint(),
+                worldSeed,
+                candidate.dimensionContract(),
+                candidate.registryContract()
+        );
+    }
+
+    static ActivePack resolveActive(GenerationHistory history) throws IOException {
+        GenerationEpoch epoch = history.activeEpoch();
+        Path packRoot = normalize(history.activePackRoot());
+        validatePack(packRoot, epoch.packFingerprint());
+        validateDimension(packRoot, epoch.dimensionContract());
+        return new ActivePack(
+                packRoot,
+                epoch.dimensionContract().dimensionKey(),
+                epoch.dimensionContract(),
+                history
+        );
+    }
+
+    private static void validatePack(Path packRoot, String fingerprint) {
+        PackValidationResult validation = PackValidator.validate(packRoot.toFile());
+        PackValidationRegistry.publish(packRoot, validation, fingerprint);
+        if (!validation.isLoadable()) {
+            throw new BrokenPackException(packRoot.toString(), validation.getBlockingErrors());
+        }
+    }
+
+    private static void validateDimension(
+            Path packRoot,
+            GenerationEpoch.DimensionContract recordedContract
+    ) throws IOException {
+        IrisData data = IrisData.openDatapackCompiler(packRoot.toFile());
+        try {
+            IrisDimension dimension = data.getDimensionLoader().load(recordedContract.dimensionKey(), false);
+            if (dimension == null) {
+                throw new IOException("Immutable generation pack does not contain dimension '"
+                        + recordedContract.dimensionKey() + "'.");
+            }
+            GenerationEpoch.DimensionContract actualContract = GenerationEpochContractFactory.create(
+                    dimension,
+                    dimension.getLoadKey(),
+                    recordedContract.dimensionTypeKey()
+            );
+            if (!recordedContract.equals(actualContract)) {
+                throw new IOException("Immutable generation pack no longer matches its recorded dimension contract.");
+            }
+        } finally {
+            data.close();
+        }
+    }
+
+    private static Candidate captureCandidate(Path source, String dimensionKey) throws IOException {
+        return captureCandidate(
+                source,
+                dimensionKey,
+                GenerationRegistryContractFactory.CustomBiomeAliasPolicy.CONTENT_ADDRESSED_ONLY
+        );
+    }
+
+    private static Candidate captureCandidate(
+            Path source,
+            String dimensionKey,
+            GenerationRegistryContractFactory.CustomBiomeAliasPolicy aliasPolicy
+    ) throws IOException {
+        String fingerprint = GenerationPackFingerprint.compute(
+                source,
+                GenerationPackFingerprint.CURRENT_VERSION
+        );
+        IrisData data = IrisData.openDatapackCompiler(source.toFile());
+        try {
+            IrisDimension dimension = data.getDimensionLoader().load(dimensionKey, false);
+            if (dimension == null) {
+                throw new IOException("Selected Iris pack does not contain dimension '" + dimensionKey + "'.");
+            }
+            PlatformGenerationRegistry generationRegistry = IrisPlatforms.get()
+                    .registries()
+                    .generationRegistry();
+            String dimensionTypeKey = generationRegistry.dimensionTypeResourceKey(
+                    source.getFileName().toString(),
+                    dimension.getLoadKey(),
+                    dimension.getDimensionTypeKey()
+            );
+            GenerationEpoch.DimensionContract dimensionContract = GenerationEpochContractFactory.create(
+                    dimension,
+                    dimension.getLoadKey(),
+                    dimensionTypeKey
+            );
+            GenerationRegistryContract registryContract = GenerationRegistryContractFactory.create(
+                    data,
+                    dimension,
+                    fingerprint,
+                    aliasPolicy
+            );
+            return new Candidate(fingerprint, dimensionContract, registryContract);
+        } finally {
+            data.close();
+        }
+    }
+
+    private static Path selectedPackSource(String pack, String dimensionKey) {
+        ModdedStartup.requirePackForWorldCreation(pack);
+        return normalize(ModdedWorldEngines.resolvePack(pack, dimensionKey).toPath());
+    }
+
+    private static GenerationRegistryContract requireRegistryDefinitions(
+            Collection<GenerationRegistryContract> contracts
+    )
+            throws IOException {
+        return GenerationRegistryContractFactory.captureRequiredDefinitions(contracts);
+    }
+
+    private static void requireRegistryDefinitions(
+            GenerationHistory history,
+            RegistryContractValidator validator
+    ) throws IOException {
+        captureAndRequireRegistryDefinitions(registryContracts(history), validator);
+    }
+
+    private static void captureAndRequireRegistryDefinitions(
+            Collection<GenerationRegistryContract> contracts,
+            RegistryContractValidator validator
+    ) throws IOException {
+        GenerationRegistryContract available = validator.capture(contracts);
+        for (GenerationRegistryContract contract : contracts) {
+            contract.requireDefinitionsAvailableIn(available);
+        }
+    }
+
+    private static List<GenerationRegistryContract> registryContracts(GenerationHistory history) {
+        Collection<GenerationEpoch> epochs = history.manifest().epochs();
+        List<GenerationRegistryContract> contracts = new ArrayList<>(epochs.size());
+        for (GenerationEpoch epoch : epochs) {
+            contracts.add(epoch.registryContract());
+        }
+        return contracts;
+    }
+
+    private static Path dimensionRoot(MinecraftServer server, ResourceKey<Level> levelKey) {
+        return normalize(ModdedDimensionStorage.storageFolder(server, levelKey).toPath());
+    }
+
+    private static Path normalize(Path path) {
+        return Objects.requireNonNull(path, "path").toAbsolutePath().normalize();
+    }
+
+    private static IllegalStateException historyFailure(ResourceKey<Level> levelKey, IOException failure) {
+        return new IllegalStateException("Iris generation history is unusable for '"
+                + levelKey.identifier() + "'.", failure);
+    }
+
+    record ActivePack(
+            Path packRoot,
+            String dimensionKey,
+            GenerationEpoch.DimensionContract dimensionContract,
+            GenerationHistory history
+    ) {
+        ActivePack {
+            packRoot = normalize(packRoot);
+            dimensionKey = Objects.requireNonNull(dimensionKey, "dimensionKey");
+            dimensionContract = Objects.requireNonNull(dimensionContract, "dimensionContract");
+            history = Objects.requireNonNull(history, "history");
+        }
+    }
+
+    record Candidate(
+            String packFingerprint,
+            GenerationEpoch.DimensionContract dimensionContract,
+            GenerationRegistryContract registryContract
+    ) {
+        Candidate {
+            packFingerprint = Objects.requireNonNull(packFingerprint, "packFingerprint");
+            dimensionContract = Objects.requireNonNull(dimensionContract, "dimensionContract");
+            registryContract = Objects.requireNonNull(registryContract, "registryContract");
+        }
+    }
+
+    record AdoptionSource(Path packSource, Candidate candidate) {
+        AdoptionSource {
+            packSource = normalize(packSource);
+            candidate = Objects.requireNonNull(candidate, "candidate");
+        }
+    }
+
+    @FunctionalInterface
+    interface AdoptionSourceSupplier {
+        AdoptionSource get() throws IOException;
+    }
+
+    @FunctionalInterface
+    interface RegistryContractValidator {
+        GenerationRegistryContract capture(Collection<GenerationRegistryContract> contracts) throws IOException;
+    }
+
+}

adapters/modded-common/src/main/java/art/arcane/iris/modded/ModdedGenerationMode.java

@@ -0,0 +1,17 @@
+package art.arcane.iris.modded;
+
+enum ModdedGenerationMode {
+    PERSISTENT_CREATE(true),
+    PERSISTENT_RESTORE(true),
+    TRANSIENT_STUDIO(false);
+
+    private final boolean historyRequired;
+
+    ModdedGenerationMode(boolean historyRequired) {
+        this.historyRequired = historyRequired;
+    }
+
+    boolean historyRequired() {
+        return historyRequired;
+    }
+}

adapters/modded-common/src/main/java/art/arcane/iris/modded/ModdedGenerationRegistry.java

@@ -0,0 +1,191 @@
+package art.arcane.iris.modded;
+
+import art.arcane.iris.spi.PlatformGenerationRegistry;
+import com.google.gson.JsonElement;
+import com.google.gson.JsonParser;
+import com.mojang.serialization.Codec;
+import com.mojang.serialization.JsonOps;
+import net.minecraft.core.Registry;
+import net.minecraft.core.RegistryAccess;
+import net.minecraft.core.registries.Registries;
+import net.minecraft.resources.Identifier;
+import net.minecraft.resources.RegistryOps;
+import net.minecraft.resources.ResourceKey;
+import net.minecraft.server.MinecraftServer;
+import net.minecraft.world.level.biome.Biome;
+import net.minecraft.world.level.dimension.DimensionType;
+
+import java.util.List;
+import java.util.Objects;
+import java.util.function.Supplier;
+
+final class ModdedGenerationRegistry implements PlatformGenerationRegistry {
+    private static final String BIOME_REGISTRY = "minecraft:worldgen/biome";
+    private static final String STRUCTURE_REGISTRY = "minecraft:worldgen/structure";
+    private static final String DIMENSION_TYPE_REGISTRY = "minecraft:dimension_type";
+    private static final String BLOCK_REGISTRY = "minecraft:block";
+    private static final String ENTITY_TYPE_REGISTRY = "minecraft:entity_type";
+
+    private final Supplier<MinecraftServer> server;
+    private final String runtimeIdentity;
+    private final String rendererIdentity;
+
+    ModdedGenerationRegistry(
+            Supplier<MinecraftServer> server,
+            String runtimeIdentity,
+            String rendererIdentity
+    ) {
+        this.server = Objects.requireNonNull(server, "server");
+        this.runtimeIdentity = requireText(runtimeIdentity, "runtimeIdentity");
+        this.rendererIdentity = requireText(rendererIdentity, "rendererIdentity");
+    }
+
+    @Override
+    public String runtimeIdentity() {
+        return runtimeIdentity;
+    }
+
+    @Override
+    public String generatedDefinitionRendererIdentity() {
+        return rendererIdentity;
+    }
+
+    @Override
+    public String customBiomeResourceKey(String identitySha256) {
+        return PlatformGenerationRegistry.contentAddressedCustomBiomeResourceKey(identitySha256);
+    }
+
+    @Override
+    public List<String> legacyCustomBiomeResourceKeys(
+            String packName,
+            String dimensionKey,
+            String customBiomeId
+    ) {
+        return ModdedWorldgenIds.legacyBiomeRefs(
+                requireText(packName, "packName"),
+                requireText(dimensionKey, "dimensionKey"),
+                requireText(customBiomeId, "customBiomeId")
+        );
+    }
+
+    @Override
+    public String dimensionTypeResourceKey(String packName, String dimensionKey, String dimensionTypeKey) {
+        return ModdedWorldgenIds.dimensionTypeRef(
+                requireText(packName, "packName"),
+                requireText(dimensionKey, "dimensionKey")
+        );
+    }
+
+    @Override
+    public Definition definition(String registryKey, String resourceKey) {
+        MinecraftServer instance = Objects.requireNonNull(server.get(), "Minecraft server");
+        RegistryAccess access = instance.registryAccess();
+        return switch (registryKey) {
+            case BIOME_REGISTRY -> presence(access, Registries.BIOME, registryKey, resourceKey);
+            case STRUCTURE_REGISTRY -> presence(access, Registries.STRUCTURE, registryKey, resourceKey);
+            case DIMENSION_TYPE_REGISTRY -> presence(
+                    access,
+                    Registries.DIMENSION_TYPE,
+                    registryKey,
+                    resourceKey
+            );
+            case BLOCK_REGISTRY -> presence(access, Registries.BLOCK, registryKey, resourceKey);
+            case ENTITY_TYPE_REGISTRY -> presence(access, Registries.ENTITY_TYPE, registryKey, resourceKey);
+            default -> throw new IllegalArgumentException("Unsupported generation registry: " + registryKey);
+        };
+    }
+
+    @Override
+    public Definition canonicalDefinition(String registryKey, String resourceKey, String sourceJson) {
+        MinecraftServer instance = Objects.requireNonNull(server.get(), "Minecraft server");
+        RegistryAccess access = instance.registryAccess();
+        return switch (registryKey) {
+            case BIOME_REGISTRY -> canonicalize(access, Biome.DIRECT_CODEC, sourceJson);
+            case DIMENSION_TYPE_REGISTRY -> canonicalize(access, DimensionType.DIRECT_CODEC, sourceJson);
+            default -> throw new IllegalArgumentException(
+                    "Registry does not accept generated JSON definitions: " + registryKey
+            );
+        };
+    }
+
+    @Override
+    public Definition generatedDefinition(String registryKey, String resourceKey) {
+        MinecraftServer instance = Objects.requireNonNull(server.get(), "Minecraft server");
+        RegistryAccess access = instance.registryAccess();
+        return switch (registryKey) {
+            case BIOME_REGISTRY -> exactRegistered(
+                    access,
+                    Registries.BIOME,
+                    Biome.DIRECT_CODEC,
+                    resourceKey
+            );
+            case DIMENSION_TYPE_REGISTRY -> exactRegistered(
+                    access,
+                    Registries.DIMENSION_TYPE,
+                    DimensionType.DIRECT_CODEC,
+                    resourceKey
+            );
+            default -> throw new IllegalArgumentException(
+                    "Registry does not contain Iris-generated definitions: " + registryKey
+            );
+        };
+    }
+
+    private static <T> Definition presence(
+            RegistryAccess access,
+            ResourceKey<? extends Registry<T>> registryKey,
+            String registryResourceKey,
+            String resourceKey
+    ) {
+        Registry<T> registry = access.lookupOrThrow(registryKey);
+        Identifier identifier = requireIdentifier(resourceKey);
+        T value = registry.getValue(identifier);
+        if (value == null) {
+            throw new IllegalStateException("Missing registry definition " + registryKey.identifier()
+                    + " / " + resourceKey + ".");
+        }
+        return Definition.resourceIdentity(registryResourceKey, resourceKey);
+    }
+
+    private static <T> Definition canonicalize(RegistryAccess access, Codec<T> codec, String sourceJson) {
+        RegistryOps<JsonElement> ops = RegistryOps.create(JsonOps.INSTANCE, access);
+        JsonElement source = JsonParser.parseString(Objects.requireNonNull(sourceJson, "sourceJson"));
+        T decoded = codec.parse(ops, source).getOrThrow(IllegalArgumentException::new);
+        JsonElement encoded = codec.encodeStart(ops, decoded).getOrThrow(IllegalStateException::new);
+        return Definition.exactJson(encoded.toString());
+    }
+
+    private static <T> Definition exactRegistered(
+            RegistryAccess access,
+            ResourceKey<? extends Registry<T>> registryKey,
+            Codec<T> codec,
+            String resourceKey
+    ) {
+        Registry<T> registry = access.lookupOrThrow(registryKey);
+        Identifier identifier = requireIdentifier(resourceKey);
+        T value = registry.getValue(identifier);
+        if (value == null) {
+            throw new IllegalStateException("Missing generated registry definition "
+                    + registryKey.identifier() + " / " + resourceKey + ".");
+        }
+        RegistryOps<JsonElement> ops = RegistryOps.create(JsonOps.INSTANCE, access);
+        JsonElement encoded = codec.encodeStart(ops, value).getOrThrow(IllegalStateException::new);
+        return Definition.exactJson(encoded.toString());
+    }
+
+    private static Identifier requireIdentifier(String resourceKey) {
+        Identifier identifier = Identifier.tryParse(resourceKey);
+        if (identifier == null) {
+            throw new IllegalArgumentException("Invalid registry resource key: " + resourceKey);
+        }
+        return identifier;
+    }
+
+    private static String requireText(String value, String label) {
+        String required = Objects.requireNonNull(value, label).trim();
+        if (required.isEmpty()) {
+            throw new IllegalArgumentException(label + " must not be blank.");
+        }
+        return required;
+    }
+}

adapters/modded-common/src/main/java/art/arcane/iris/modded/ModdedImportedFeatureStage.java

@@ -82,13 +82,11 @@ import java.util.function.Predicate;
  */
 final class ModdedImportedFeatureStage {
     private static final String CYCLE_MARKER = "Feature order cycle found";
-    private static final long NO_GENERATION = Long.MIN_VALUE;
-
     private final IrisModdedBiomeSource biomeSource;
     private final ReentrantLock buildLock = new ReentrantLock();
+    private final ConcurrentHashMap<Integer, FeatureTable> featureTables = new ConcurrentHashMap<>();
+    private final ConcurrentHashMap<Integer, Long> inertGenerations = new ConcurrentHashMap<>();
     private volatile IrisModdedChunkGenerator generator;
-    private volatile FeatureTable featureTable;
-    private volatile long inertGeneration = NO_GENERATION;
 
     ModdedImportedFeatureStage(IrisModdedBiomeSource biomeSource) {
         this.biomeSource = biomeSource;
@@ -103,12 +101,12 @@ final class ModdedImportedFeatureStage {
      * pack can never serve another.
      */
     void invalidate() {
-        featureTable = null;
-        inertGeneration = NO_GENERATION;
+        featureTables.clear();
+        inertGenerations.clear();
     }
 
     boolean active() {
-        return featureTable != null;
+        return !featureTables.isEmpty();
     }
 
     /**
@@ -120,7 +118,8 @@ final class ModdedImportedFeatureStage {
      * <p>With {@code importedFeatures} disabled there is no table and this is vanilla's default getter.
      */
     BiomeGenerationSettings generationSettings(Holder<Biome> biome) {
-        FeatureTable table = featureTable;
+        Engine engine = generator == null ? null : generator.engineOrNull();
+        FeatureTable table = engine == null ? null : featureTables.get(engine.getCacheID());
         if (table == null) {
             return biome.value().getGenerationSettings();
         }
@@ -151,8 +150,9 @@ final class ModdedImportedFeatureStage {
         if (engine == null || engine.isClosed() || engine.isClosing()) {
             return;
         }
+        int runtimeIdentity = engine.getCacheID();
         long generation = biomeSource.packGeneration();
-        if (settled(generation)) {
+        if (settled(runtimeIdentity, generation)) {
             return;
         }
         if (waitForBuild) {
@@ -161,35 +161,35 @@ final class ModdedImportedFeatureStage {
             return;
         }
         try {
-            if (settled(generation)) {
+            if (settled(runtimeIdentity, generation)) {
                 return;
             }
-            build(engine, generation);
+            build(engine, runtimeIdentity, generation);
         } finally {
             buildLock.unlock();
         }
     }
 
-    private boolean settled(long generation) {
-        FeatureTable current = featureTable;
+    private boolean settled(int runtimeIdentity, long generation) {
+        FeatureTable current = featureTables.get(runtimeIdentity);
         if (current != null && current.generation() == generation) {
             return true;
         }
-        return inertGeneration == generation;
+        return Long.valueOf(generation).equals(inertGenerations.get(runtimeIdentity));
     }
 
-    private void build(Engine engine, long generation) {
+    private void build(Engine engine, int runtimeIdentity, long generation) {
         IrisImportedFeatureControl control;
         try {
             control = NativeFeatureGenerationPolicy.control(engine);
         } catch (RuntimeException error) {
             ModdedIrisLog.error("Iris could not read importedFeatures for this dimension; features off: {}",
                     error.toString());
-            markInert(generation);
+            markInert(runtimeIdentity, generation);
             return;
         }
         if (!control.shouldGenerateFeatures()) {
-            markInert(generation);
+            markInert(runtimeIdentity, generation);
             return;
         }
         FeatureTable built;
@@ -199,15 +199,15 @@ final class ModdedImportedFeatureStage {
         } catch (Throwable error) {
             ModdedIrisLog.error("Iris importedFeatures is off for {}: feature table construction failed: {}",
                     dimensionKey(engine), error.toString());
-            markInert(generation);
+            markInert(runtimeIdentity, generation);
             return;
         }
         if (built == null) {
-            markInert(generation);
+            markInert(runtimeIdentity, generation);
             return;
         }
-        featureTable = built;
-        inertGeneration = NO_GENERATION;
+        featureTables.put(runtimeIdentity, built);
+        inertGenerations.remove(runtimeIdentity);
         // Arm the worldcheck log watch here, before any chunk decorates: arming from the first pass instead
         // missed every far-chunk write the first chunk made. No-op unless -Diris.worldcheck is set.
         WorldCheckFeaturePlacement.arm();
@@ -216,9 +216,9 @@ final class ModdedImportedFeatureStage {
                 built.derivatives().size());
     }
 
-    private void markInert(long generation) {
-        featureTable = null;
-        inertGeneration = generation;
+    private void markInert(int runtimeIdentity, long generation) {
+        featureTables.remove(runtimeIdentity);
+        inertGenerations.put(runtimeIdentity, generation);
     }
 
     private FeatureTable buildTable(Engine engine, IrisImportedFeatureControl control, long generation) {
@@ -312,7 +312,8 @@ final class ModdedImportedFeatureStage {
      * control is disabled or the table degraded.
      */
     void run(WorldGenLevel level, ChunkAccess chunk, Engine engine) {
-        FeatureTable table = featureTable;
+        int runtimeIdentity = engine.getCacheID();
+        FeatureTable table = featureTables.get(runtimeIdentity);
         if (table == null) {
             WorldCheckFeaturePlacement.recordFeaturesOff();
             return;
@@ -320,7 +321,8 @@ final class ModdedImportedFeatureStage {
         if (table.generation() != biomeSource.packGeneration()) {
             // A repoint landed between the prepare above and this chunk. Refuse stale content outright; the
             // next chunk's prepare rebuilds against the new pack.
-            invalidate();
+            featureTables.remove(runtimeIdentity, table);
+            inertGenerations.remove(runtimeIdentity);
             return;
         }
         IrisModdedChunkGenerator owner = generator;
@@ -423,6 +425,11 @@ final class ModdedImportedFeatureStage {
         };
     }
 
+    void evictRuntime(int runtimeIdentity) {
+        featureTables.remove(runtimeIdentity);
+        inertGenerations.remove(runtimeIdentity);
+    }
+
     private void placeStep(WorldGenLevel level, FeatureTable table, FeatureSorter.StepFeatureData stepData,
                            Registry<PlacedFeature> featureRegistry, Set<Holder<Biome>> chunkBiomes,
                            IrisModdedChunkGenerator owner, WorldgenRandom random, long decorationSeed,

adapters/modded-common/src/main/java/art/arcane/iris/modded/ModdedNativeStructureStage.java

@@ -24,6 +24,7 @@ import art.arcane.iris.engine.framework.Engine;
 import art.arcane.iris.engine.framework.IrisStructureLocator;
 import art.arcane.iris.engine.framework.NativeStructureGenerationPolicy;
 import art.arcane.iris.engine.framework.NativeStructureOwnershipRecord;
+import art.arcane.iris.engine.framework.NativeStructureOwnershipStore;
 import art.arcane.iris.engine.framework.NativeStructureStartPlan;
 import art.arcane.iris.engine.object.IrisMaterialPalette;
 import art.arcane.iris.engine.object.IrisNativeStructureDecision;
@@ -233,17 +234,30 @@ final class ModdedNativeStructureStage {
             if (!start.isValid() || previousStarts.get(structure) == start) {
                 continue;
             }
-            if (configuredStarts.containsKey(structure)) {
-                recordWorldCheckStructureShift(
-                        configuredStarts.get(structure).source().getStructure(), start.getChunkPos(), 0);
-                continue;
-            }
             Identifier id = registry.getKey(structure);
             String structureId = id == null ? null : id.toString();
             if (structureId == null) {
                 throw NativeStructureGenerationException.failure(
                         "resolution", null, chunkPos.x(), chunkPos.z());
             }
+            BoundingBox footprint = start.getBoundingBox();
+            if (!current.getComplex().allowsNewGenerationFootprint(
+                    footprint.minX(),
+                    footprint.minZ(),
+                    footprint.maxX(),
+                    footprint.maxZ())) {
+                chunk.setStartForStructure(structure, StructureStart.INVALID_START);
+                if (configuredStarts.containsKey(structure)) {
+                    NativeStructureOwnershipStore.discard(
+                            current, structureId, chunkPos.x(), chunkPos.z());
+                }
+                continue;
+            }
+            if (configuredStarts.containsKey(structure)) {
+                recordWorldCheckStructureShift(
+                        configuredStarts.get(structure).source().getStructure(), start.getChunkPos(), 0);
+                continue;
+            }
             boolean undergroundStep = NativeStructureVegetationClearer.isUndergroundStep(structure.step());
             IrisNativeStructureDecision decision;
             try {
@@ -326,6 +340,14 @@ final class ModdedNativeStructureStage {
                     List<StructureStart> starts = structureManager.startsForStructure(sectionPos, structure);
                     List<NativePlacement> resolvedPlacements = new ArrayList<>(starts.size());
                     for (StructureStart start : starts) {
+                        BoundingBox footprint = start.getBoundingBox();
+                        if (!current.getComplex().allowsNewGenerationFootprint(
+                                footprint.minX(),
+                                footprint.minZ(),
+                                footprint.maxX(),
+                                footprint.maxZ())) {
+                            continue;
+                        }
                         NativeStructureOwnershipRecord ownership =
                                 NativeStructureOwnershipRecovery.resolve(
                                         current, world.getLevel(), structureId, structure, start);

adapters/modded-common/src/main/java/art/arcane/iris/modded/ModdedRegistries.java

@@ -18,6 +18,7 @@
 
 package art.arcane.iris.modded;
 
+import art.arcane.iris.BuildConstants;
 import art.arcane.iris.modded.api.ModdedCustomContentRegistry;
 import art.arcane.iris.modded.api.ModdedDataType;
 import art.arcane.iris.spi.IrisLogging;
@@ -25,6 +26,7 @@ import art.arcane.iris.spi.PlatformBiome;
 import art.arcane.iris.spi.PlatformBlockProperty;
 import art.arcane.iris.spi.PlatformBlockState;
 import art.arcane.iris.spi.PlatformEntityType;
+import art.arcane.iris.spi.PlatformGenerationRegistry;
 import art.arcane.iris.spi.PlatformItem;
 import art.arcane.iris.spi.PlatformRegistries;
 import art.arcane.volmlib.util.data.UnresolvedKeyLog;
@@ -59,6 +61,19 @@ public final class ModdedRegistries implements PlatformRegistries {
         this.server = server;
     }
 
+    @Override
+    public PlatformGenerationRegistry generationRegistry() {
+        MinecraftServer instance = server.get();
+        if (instance == null) {
+            throw new IllegalStateException("Minecraft server is not ready for generation registry capture.");
+        }
+        return new ModdedGenerationRegistry(
+                server,
+                "modded-generation-registry-v1",
+                "modded-generated-registry-json-v1|minecraft:" + BuildConstants.MINECRAFT_VERSION
+        );
+    }
+
     @Override
     public PlatformBlockState block(String key) {
         return ModdedBlockResolution.get(key);

adapters/modded-common/src/main/java/art/arcane/iris/modded/ModdedRuntimeRegistry.java

@@ -71,7 +71,7 @@ public final class ModdedRuntimeRegistry {
                 if (!seen.add(biomeId)) {
                     continue;
                 }
-                String biomeRef = ModdedWorldgenIds.biomeRef(pack, dimension.getLoadKey(), biomeId);
+                String biomeRef = data.customBiomeResourceKey(dimension, customBiome);
                 ResourceKey<Biome> biomeKey = ResourceKey.create(Registries.BIOME, Identifier.parse(biomeRef));
                 if (registry.get(biomeKey).isEmpty()) {
                     missing.add(biomeRef);

adapters/modded-common/src/main/java/art/arcane/iris/modded/ModdedSpawnTableMerger.java

@@ -36,27 +36,31 @@ import net.minecraft.world.level.biome.Biome;
 import net.minecraft.world.level.biome.MobSpawnSettings;
 
 import java.util.Optional;
+import java.util.Set;
 import java.util.concurrent.ConcurrentHashMap;
 
 final class ModdedSpawnTableMerger {
     private final IrisModdedChunkGenerator generator;
-    private volatile SpawnTableState state = new SpawnTableState();
+    private final ConcurrentHashMap<SpawnBiomeKey, Holder<Biome>> vanillaSpawnBiomes = new ConcurrentHashMap<>();
+    private final ConcurrentHashMap<SpawnTableKey, WeightedList<MobSpawnSettings.SpawnerData>> mergedSpawnTables =
+            new ConcurrentHashMap<>();
+    private final Set<Integer> initializedRuntimeIdentities = ConcurrentHashMap.newKeySet();
 
     ModdedSpawnTableMerger(IrisModdedChunkGenerator generator) {
         this.generator = generator;
     }
 
     void initializeVanillaSpawnBiomes(Registry<Biome> registry) {
-        SpawnTableState active = state;
-        if (active.initialized) {
+        Engine current = generator.engineOrNull();
+        if (current == null) {
             return;
         }
-        synchronized (active) {
-            if (active != state || active.initialized) {
-                return;
-            }
-            Engine current = generator.engineOrNull();
-            if (current == null) {
+        int runtimeIdentity = current.getCacheID();
+        if (initializedRuntimeIdentities.contains(runtimeIdentity)) {
+            return;
+        }
+        synchronized (generator) {
+            if (initializedRuntimeIdentities.contains(runtimeIdentity)) {
                 return;
             }
 
@@ -68,7 +72,7 @@ final class ModdedSpawnTableMerger {
                         hostDimension,
                         current.getData(),
                         hostDimension.getReachableBiomes(current),
-                        active
+                        runtimeIdentity
                 );
                 DimensionStackContext stackContext = current.getDimensionStackContext();
                 if (stackContext != null) {
@@ -82,11 +86,11 @@ final class ModdedSpawnTableMerger {
                                 dimension,
                                 terrainContext.getData(),
                                 dimension.getReachableBiomes(terrainContext),
-                                active
+                                runtimeIdentity
                         );
                     }
                 }
-                active.initialized = true;
+                initializedRuntimeIdentities.add(runtimeIdentity);
             }
         }
     }
@@ -96,7 +100,7 @@ final class ModdedSpawnTableMerger {
             IrisDimension dimension,
             IrisData data,
             Iterable<IrisBiome> biomes,
-            SpawnTableState state
+            int runtimeIdentity
     ) {
         for (IrisBiome irisBiome : biomes) {
             if (irisBiome == null || !irisBiome.isCustom()) {
@@ -110,31 +114,43 @@ final class ModdedSpawnTableMerger {
             for (IrisBiomeCustom customBiome : irisBiome.getCustomDerivitives()) {
                 Holder<Biome> customHolder = resolveBiomeHolder(
                         registry,
-                        ModdedWorldgenIds.biomeRef(
-                                data.getDataFolder().getName(),
-                                dimension.getLoadKey(),
-                                customBiome.getId()
-                        )
+                        data.customBiomeResourceKey(dimension, customBiome)
                 );
                 if (customHolder == null) {
                     continue;
                 }
-                state.vanillaSpawnBiomes.putIfAbsent(customHolder.value(), vanillaHolder);
+                vanillaSpawnBiomes.putIfAbsent(
+                        new SpawnBiomeKey(runtimeIdentity, customHolder.value()),
+                        vanillaHolder
+                );
             }
         }
     }
 
     Holder<Biome> vanillaSpawnBiome(Biome biome) {
-        return state.vanillaSpawnBiomes.get(biome);
+        Engine current = generator.engineOrNull();
+        return current == null
+                ? null
+                : vanillaSpawnBiomes.get(new SpawnBiomeKey(current.getCacheID(), biome));
     }
 
     WeightedList<MobSpawnSettings.SpawnerData> mergedSpawnTable(
-            Biome biome, MobCategory category,
+            Engine engine,
+            Biome biome,
+            MobCategory category,
             WeightedList<MobSpawnSettings.SpawnerData> vanillaSpawns,
             WeightedList<MobSpawnSettings.SpawnerData> explicitSpawns) {
-        SpawnTableKey key = new SpawnTableKey(biome, category);
-        return state.mergedSpawnTables.computeIfAbsent(
-                key, ignored -> NativeSpawnTableMerger.merge(vanillaSpawns, explicitSpawns));
+        SpawnTableKey key = new SpawnTableKey(engine.getCacheID(), biome, category);
+        return mergedSpawnTables.computeIfAbsent(
+                key,
+                ignored -> NativeSpawnTableMerger.merge(vanillaSpawns, explicitSpawns)
+        );
+    }
+
+    void evictRuntime(int runtimeIdentity) {
+        vanillaSpawnBiomes.keySet().removeIf(key -> key.runtimeIdentity() == runtimeIdentity);
+        mergedSpawnTables.keySet().removeIf(key -> key.runtimeIdentity() == runtimeIdentity);
+        initializedRuntimeIdentities.remove(runtimeIdentity);
     }
 
     private Holder<Biome> resolveBiomeHolder(Registry<Biome> registry, String key) {
@@ -150,16 +166,16 @@ final class ModdedSpawnTableMerger {
     }
 
     void resetVanillaSpawnBiomes() {
-        state = new SpawnTableState();
+        synchronized (generator) {
+            vanillaSpawnBiomes.clear();
+            mergedSpawnTables.clear();
+            initializedRuntimeIdentities.clear();
+        }
     }
 
-    private record SpawnTableKey(Biome biome, MobCategory category) {
+    private record SpawnBiomeKey(int runtimeIdentity, Biome biome) {
     }
 
-    private static final class SpawnTableState {
-        private final ConcurrentHashMap<Biome, Holder<Biome>> vanillaSpawnBiomes = new ConcurrentHashMap<>();
-        private final ConcurrentHashMap<SpawnTableKey, WeightedList<MobSpawnSettings.SpawnerData>> mergedSpawnTables =
-                new ConcurrentHashMap<>();
-        private volatile boolean initialized;
+    private record SpawnTableKey(int runtimeIdentity, Biome biome, MobCategory category) {
     }
 }

adapters/modded-common/src/main/java/art/arcane/iris/modded/ModdedStartup.java

@@ -223,7 +223,13 @@ public final class ModdedStartup {
             index++;
             long dimensionStartedAt = System.currentTimeMillis();
             try {
-                ModdedDimensionManager.create(server, dimension.id(), dimension.pack(), dimension.dimension(), dimension.seed());
+                ModdedDimensionManager.restorePersistent(
+                        server,
+                        dimension.id(),
+                        dimension.pack(),
+                        dimension.dimension(),
+                        dimension.seed()
+                );
                 injected++;
                 ModdedIrisLog.info("Iris re-injected {}/{} '{}' (pack={} dim={}) in {}ms",
                         index, dimensions.size(), dimension.id(), dimension.pack(), dimension.dimension(),

adapters/modded-common/src/main/java/art/arcane/iris/modded/ModdedWorldEngines.java

@@ -18,21 +18,30 @@
 
 package art.arcane.iris.modded;
 
-import art.arcane.iris.spi.IrisPlatforms;
+import art.arcane.iris.core.IrisSettings;
 import art.arcane.iris.core.loader.IrisData;
 import art.arcane.iris.core.pack.PackValidationRegistry;
 import art.arcane.iris.engine.IrisEngine;
 import art.arcane.iris.engine.framework.Engine;
 import art.arcane.iris.engine.framework.EngineTarget;
+import art.arcane.iris.engine.history.GenerationActivation;
+import art.arcane.iris.engine.history.GenerationEpoch;
+import art.arcane.iris.engine.history.GenerationEpochContractFactory;
+import art.arcane.iris.engine.history.GenerationHistory;
+import art.arcane.iris.engine.history.GenerationHistoryRuntimeRouter;
+import art.arcane.iris.engine.history.IrisBoundarySignatureSampler;
+import art.arcane.iris.engine.history.TransitionGenerationPlan;
 import art.arcane.iris.engine.object.IrisDimension;
 import art.arcane.iris.engine.object.IrisDimensionRuntimeContract;
 import art.arcane.iris.engine.object.IrisWorld;
 import art.arcane.iris.modded.command.ModdedGuiHost;
+import art.arcane.iris.spi.IrisPlatforms;
 import net.minecraft.server.level.ServerLevel;
 import net.minecraft.world.level.dimension.DimensionType;
 import net.minecraft.world.level.storage.LevelResource;
 
 import java.io.File;
+import java.io.IOException;
 import java.util.ArrayList;
 import java.util.Collection;
 import java.util.Map;
@@ -45,13 +54,25 @@ public final class ModdedWorldEngines {
     private ModdedWorldEngines() {
     }
 
-    public static Engine get(ServerLevel level, String pack, String dimensionKey, long seedOverride) {
+    public static Engine get(
+            ServerLevel level,
+            String pack,
+            String dimensionKey,
+            long seedOverride,
+            ModdedGenerationMode generationMode
+    ) {
         Engine existing = ENGINES.get(level);
         if (existing != null) {
             return existing;
         }
         return ENGINES.computeIfAbsent(level,
-                (ServerLevel l) -> createAndApplyWorldBoundary(l, pack, dimensionKey, seedOverride));
+                (ServerLevel l) -> createAndApplyWorldBoundary(
+                        l,
+                        pack,
+                        dimensionKey,
+                        seedOverride,
+                        generationMode
+                ));
     }
 
     public static Collection<Engine> activeEngines() {
@@ -81,8 +102,14 @@ public final class ModdedWorldEngines {
         ModdedIrisLog.info("Iris engine evicted for {}", level.dimension().identifier());
     }
 
-    static Engine prepareReplacement(ServerLevel level, String pack, String dimensionKey, long seedOverride) {
-        return create(level, pack, dimensionKey, seedOverride);
+    static Engine prepareReplacement(
+            ServerLevel level,
+            String pack,
+            String dimensionKey,
+            long seedOverride,
+            ModdedGenerationMode generationMode
+    ) {
+        return create(level, pack, dimensionKey, seedOverride, generationMode);
     }
 
     static void installReplacement(ServerLevel level, Engine replacement) {
@@ -103,9 +130,14 @@ public final class ModdedWorldEngines {
         ModdedGuiHost.unbind(engine);
     }
 
-    private static Engine createAndApplyWorldBoundary(ServerLevel level, String pack,
-                                                      String dimensionKey, long seedOverride) {
-        Engine engine = create(level, pack, dimensionKey, seedOverride);
+    private static Engine createAndApplyWorldBoundary(
+            ServerLevel level,
+            String pack,
+            String dimensionKey,
+            long seedOverride,
+            ModdedGenerationMode generationMode
+    ) {
+        Engine engine = create(level, pack, dimensionKey, seedOverride, generationMode);
         try {
             engine.getPlatformHooks().applyWorldBoundary(engine);
             return engine;
@@ -126,22 +158,178 @@ public final class ModdedWorldEngines {
         }
     }
 
-    private static Engine create(ServerLevel level, String pack, String dimensionKey, long seedOverride) {
+    private static Engine create(
+            ServerLevel level,
+            String pack,
+            String dimensionKey,
+            long seedOverride,
+            ModdedGenerationMode generationMode
+    ) {
         ModdedEngineBootstrap.bind();
-        File packDir = resolvePack(pack, dimensionKey);
-        PackValidationRegistry.requireLoadable(pack);
-        IrisData data = IrisData.openRuntime(packDir);
-        IrisDimension dimension = data.getDimensionLoader().load(dimensionKey);
-        if (dimension == null) {
-            ModdedIrisLog.error("Iris pack '{}' at {} does not contain dimension '{}' (expected dimensions/{}.json). Install a matching Iris pack and restart.",
-                    pack, packDir.getAbsolutePath(), dimensionKey, dimensionKey);
-            throw new IllegalStateException("Iris dimension '" + dimensionKey + "' missing from pack " + packDir.getAbsolutePath());
-        }
-
         long seed = seedOverride == Long.MIN_VALUE ? level.getSeed() : seedOverride;
-        validateDimensionContract(pack, dimensionKey, dimension, level);
-        File worldFolder = DimensionType.getStorageFolder(level.dimension(), level.getServer().getWorldPath(LevelResource.ROOT)).toFile();
-        IrisWorld world = IrisWorld.builder()
+        ModdedGenerationMode requiredMode = Objects.requireNonNull(generationMode, "generationMode");
+        if (requiredMode == ModdedGenerationMode.TRANSIENT_STUDIO) {
+            return createTransientStudioEngine(level, pack, dimensionKey, seed);
+        }
+        ModdedGenerationHistoryStorage.ActivePack active = ModdedGenerationHistoryStorage.openOrAdopt(
+                level,
+                pack,
+                dimensionKey,
+                seed
+        );
+        try {
+            return createHistoryEngine(level, seed, active);
+        } catch (IOException failure) {
+            throw new IllegalStateException("Iris generation history could not initialize runtime routing for '"
+                    + level.dimension().identifier() + "'.", failure);
+        }
+    }
+
+    private static Engine createHistoryEngine(
+            ServerLevel level,
+            long seed,
+            ModdedGenerationHistoryStorage.ActivePack opened
+    ) throws IOException {
+        GenerationHistory history = opened.history();
+        long openedActivationId = history.activeActivation().activationId();
+        IrisEngine candidate = buildEngine(level, seed, opened);
+        boolean ready = false;
+        try {
+            GenerationHistoryRuntimeRouter router = candidate.attachGenerationHistory(
+                    history,
+                    IrisBoundarySignatureSampler.INSTANCE,
+                    IrisSettings.get().getGenerator().getGenerationTransitionWidthBlocks()
+            );
+            router.preloadActiveRuntimes();
+            if (history.activeActivation().activationId() != openedActivationId) {
+                close(candidate);
+                ModdedGenerationHistoryStorage.ActivePack promoted =
+                        ModdedGenerationHistoryStorage.resolveActive(history);
+                candidate = buildEngine(level, seed, promoted);
+                router = GenerationHistoryRuntimeRouter.attach(
+                        candidate,
+                        history,
+                        IrisBoundarySignatureSampler.INSTANCE
+                );
+                router.preloadActiveRuntimes();
+            }
+            requireReady(candidate, level, ModdedGenerationMode.PERSISTENT_RESTORE);
+            ready = true;
+            ModdedIrisLog.info("Iris engine up for {}: pack={} dim={} seed={} height={}..{} activation={}",
+                    level.dimension().identifier(),
+                    candidate.getData().getDataFolder().getAbsolutePath(),
+                    candidate.getDimension().getLoadKey(),
+                    seed,
+                    candidate.getDimension().getMinHeight(),
+                    candidate.getDimension().getMaxHeight(),
+                    history.activeActivation().activationId());
+            return candidate;
+        } finally {
+            if (!ready) {
+                close(candidate);
+            }
+        }
+    }
+
+    private static IrisEngine buildEngine(
+            ServerLevel level,
+            long seed,
+            ModdedGenerationHistoryStorage.ActivePack active
+    ) throws IOException {
+        File packDir = active.packRoot().toFile();
+        PackValidationRegistry.requireLoadable(active.packRoot());
+        IrisData data = IrisData.openRuntime(packDir);
+        boolean runtimeOwnsData = false;
+        try {
+            IrisDimension dimension = data.getDimensionLoader().load(active.dimensionKey());
+            if (dimension == null) {
+                ModdedIrisLog.error("Iris immutable generation pack at {} does not contain dimension '{}' (expected dimensions/{}.json).",
+                        packDir.getAbsolutePath(), active.dimensionKey(), active.dimensionKey());
+                throw new IllegalStateException("Iris dimension '" + active.dimensionKey()
+                        + "' missing from immutable pack " + packDir.getAbsolutePath());
+            }
+
+            validateDimensionContract(active.dimensionContract(), dimension, level);
+            File worldFolder = DimensionType.getStorageFolder(
+                    level.dimension(),
+                    level.getServer().getWorldPath(LevelResource.ROOT)
+            ).toFile();
+            IrisWorld world = buildWorld(level, seed, dimension, worldFolder);
+            GenerationHistory history = active.history();
+            GenerationActivation activation = history.activeActivation();
+            GenerationEpoch epoch = history.activeEpoch();
+            TransitionGenerationPlan transitionPlan = activation.isInitial()
+                    ? null
+                    : history.transitionPlan(activation.activationId());
+            IrisEngine engine = new IrisEngine(
+                    new EngineTarget(world, dimension, data),
+                    IrisEngine.InitializationMode.RUNTIME,
+                    history.paths().activationMantleRoot(activation.activationId()),
+                    epoch.kernelVersion(),
+                    transitionPlan);
+            runtimeOwnsData = true;
+            return engine;
+        } finally {
+            if (!runtimeOwnsData) {
+                data.close();
+            }
+        }
+    }
+
+    private static IrisEngine createTransientStudioEngine(
+            ServerLevel level,
+            String pack,
+            String dimensionKey,
+            long seed
+    ) {
+        File packDir = resolvePack(pack, dimensionKey);
+        PackValidationRegistry.requireLoadable(packDir.toPath());
+        IrisData data = IrisData.openRuntime(packDir);
+        boolean runtimeOwnsData = false;
+        boolean ready = false;
+        IrisEngine engine = null;
+        try {
+            IrisDimension dimension = data.getDimensionLoader().load(dimensionKey);
+            if (dimension == null) {
+                throw new IllegalStateException("Transient Iris Studio pack does not contain dimension '"
+                        + dimensionKey + "'.");
+            }
+            File worldFolder = DimensionType.getStorageFolder(
+                    level.dimension(),
+                    level.getServer().getWorldPath(LevelResource.ROOT)
+            ).toFile();
+            IrisWorld world = buildWorld(level, seed, dimension, worldFolder);
+            engine = new IrisEngine(
+                    new EngineTarget(world, dimension, data),
+                    IrisEngine.InitializationMode.STUDIO
+            );
+            runtimeOwnsData = true;
+            requireReady(engine, level, ModdedGenerationMode.TRANSIENT_STUDIO);
+            ready = true;
+            ModdedIrisLog.info("Iris transient Studio engine up for {}: pack={} dim={} seed={} height={}..{}",
+                    level.dimension().identifier(),
+                    packDir.getAbsolutePath(),
+                    dimension.getLoadKey(),
+                    seed,
+                    dimension.getMinHeight(),
+                    dimension.getMaxHeight());
+            return engine;
+        } finally {
+            if (!ready && engine != null) {
+                close(engine);
+            } else if (!runtimeOwnsData) {
+                data.close();
+            }
+        }
+    }
+
+    private static IrisWorld buildWorld(
+            ServerLevel level,
+            long seed,
+            IrisDimension dimension,
+            File worldFolder
+    ) {
+        return IrisWorld.builder()
                 .platformIdentity(level.dimension().identifier().toString())
                 .name(level.dimension().identifier().toString().replace(':', '_'))
                 .seed(seed)
@@ -150,40 +338,52 @@ public final class ModdedWorldEngines {
                 .maxHeight(dimension.getMaxHeight())
                 .platformWorld(new ModdedPlatformWorld(level))
                 .build();
-        Engine engine = new IrisEngine(
-                new EngineTarget(world, dimension, data),
-                IrisEngine.InitializationMode.RUNTIME);
-        if (engine.isClosed() || engine.getComplex() == null) {
-            IllegalStateException failure = new IllegalStateException("Iris engine for "
-                    + level.dimension().identifier() + " did not initialize a ready biome complex");
-            try {
-                close(engine);
-            } catch (Throwable cleanupError) {
-                failure.addSuppressed(cleanupError);
-            }
-            throw failure;
-        }
-
-        ModdedIrisLog.info("Iris engine up for {}: pack={} dim={} seed={} height={}..{}",
-                level.dimension().identifier(), packDir.getAbsolutePath(), dimension.getLoadKey(), seed, dimension.getMinHeight(), dimension.getMaxHeight());
-        return engine;
     }
 
-    private static void validateDimensionContract(String pack, String dimensionKey,
-                                                  IrisDimension dimension, ServerLevel level) {
+    private static void requireReady(
+            IrisEngine engine,
+            ServerLevel level,
+            ModdedGenerationMode generationMode
+    ) {
+        if (engine.isClosed() || engine.getComplex() == null) {
+            throw new IllegalStateException("Iris engine for " + level.dimension().identifier()
+                    + " did not initialize a ready runtime");
+        }
+        if (generationMode.historyRequired()
+                && engine.getGenerationHistoryRuntimeRouter().isEmpty()) {
+            throw new IllegalStateException("Persistent Iris engine for " + level.dimension().identifier()
+                    + " did not initialize a generation-history runtime router");
+        }
+        if (!generationMode.historyRequired()
+                && (!engine.isStudio() || engine.getGenerationHistoryRuntimeRouter().isPresent())) {
+            throw new IllegalStateException("Transient Iris Studio engine for "
+                    + level.dimension().identifier() + " has an invalid history mode");
+        }
+    }
+
+    private static void validateDimensionContract(
+            GenerationEpoch.DimensionContract recorded,
+            IrisDimension dimension,
+            ServerLevel level
+    ) {
+        GenerationEpoch.DimensionContract loaded = GenerationEpochContractFactory.create(
+                dimension,
+                dimension.getLoadKey(),
+                recorded.dimensionTypeKey()
+        );
+        if (!recorded.equals(loaded)) {
+            throw new IllegalStateException("Immutable Iris dimension contract changed for '"
+                    + level.dimension().identifier() + "'.");
+        }
         DimensionType actualType = level.dimensionType();
         String actualTypeKey = level.dimensionTypeRegistration().unwrapKey()
                 .map(key -> key.identifier().toString())
                 .orElse("<unregistered>");
-        String legacyTypeKey = "irisworldgen:" + dimension.getDimensionTypeKey();
-        String expectedTypeKey = legacyTypeKey.equals(actualTypeKey)
-                ? legacyTypeKey
-                : ModdedWorldgenIds.dimensionTypeRef(pack, dimensionKey);
         IrisDimensionRuntimeContract expected = new IrisDimensionRuntimeContract(
-                expectedTypeKey,
-                dimension.getMinHeight(),
-                dimension.getMaxHeight() - dimension.getMinHeight(),
-                dimension.getLogicalHeight());
+                recorded.dimensionTypeKey(),
+                recorded.minHeight(),
+                recorded.height(),
+                recorded.logicalHeight());
         IrisDimensionRuntimeContract actual = new IrisDimensionRuntimeContract(
                 actualTypeKey,
                 actualType.minY(),

adapters/modded-common/src/main/java/art/arcane/iris/modded/ModdedWorldgenIds.java

@@ -3,7 +3,9 @@ package art.arcane.iris.modded;
 import art.arcane.iris.engine.framework.Engine;
 
 import java.nio.charset.StandardCharsets;
+import java.util.List;
 import java.util.Locale;
+import java.util.Optional;
 
 public final class ModdedWorldgenIds {
     private static final String NAMESPACE = "irisworldgen";
@@ -29,8 +31,33 @@ public final class ModdedWorldgenIds {
     }
 
     public static String biomeRef(Engine engine, String biome) {
-        return biomeRef(engine.getData().getDataFolder().getName(),
-                engine.getDimension().getLoadKey(), biome);
+        return engine.getData().customBiomeResourceKey(engine.getDimension(), biome);
+    }
+
+    public static List<String> legacyBiomeRefs(String pack, String dimension, String biome) {
+        String scoped = biomeRef(pack, dimension, biome);
+        String unscoped = dimension.toLowerCase(Locale.ROOT) + ":" + biome.toLowerCase(Locale.ROOT);
+        return scoped.equals(unscoped) ? List.of(scoped) : List.of(scoped, unscoped);
+    }
+
+    static Optional<ScopedDimension> scopedDimensionType(String dimensionTypeRef) {
+        String prefix = NAMESPACE + ":";
+        if (dimensionTypeRef == null || !dimensionTypeRef.startsWith(prefix)) {
+            return Optional.empty();
+        }
+        String[] parts = dimensionTypeRef.substring(prefix.length()).split("/");
+        if (parts.length != 5
+                || !"packs".equals(parts[0])
+                || !"dimensions".equals(parts[2])
+                || !"dimension_type".equals(parts[4])) {
+            return Optional.empty();
+        }
+        String pack = decode(parts[1]);
+        String dimension = decode(parts[3]);
+        if (pack == null || dimension == null) {
+            return Optional.empty();
+        }
+        return Optional.of(new ScopedDimension(pack, dimension));
     }
 
     public static String displayName(String presetPath) {
@@ -100,4 +127,7 @@ public final class ModdedWorldgenIds {
         }
         return Character.toUpperCase(normalized.charAt(0)) + normalized.substring(1);
     }
+
+    record ScopedDimension(String pack, String dimension) {
+    }
 }

adapters/modded-common/src/main/java/art/arcane/iris/modded/command/ModdedCommandSuggestions.java

@@ -26,6 +26,7 @@ import art.arcane.iris.engine.framework.IrisStructureLocator;
 import art.arcane.iris.engine.framework.NativeStructureGenerationPolicy;
 import art.arcane.iris.engine.framework.StructureReachability;
 import art.arcane.iris.engine.hydrology.HydrologyFeatureQuery;
+import art.arcane.iris.engine.history.GenerationFindCatalog;
 import art.arcane.iris.engine.object.IrisBiome;
 import art.arcane.iris.engine.object.IrisNativeStructureDecision;
 import art.arcane.iris.engine.object.NativeStructureGenerationStatus;
@@ -109,7 +110,7 @@ final class ModdedCommandSuggestions {
     }
 
     static Set<String> reachableBiomeKeys(Engine engine) {
-        return reachableBiomeKeys(engine.getAllBiomes());
+        return reachableBiomeKeys(GenerationFindCatalog.biomes(engine));
     }
 
     static Set<String> reachableBiomeKeys(Iterable<IrisBiome> biomes) {
@@ -123,7 +124,7 @@ final class ModdedCommandSuggestions {
     }
 
     static boolean isReachableBiome(Engine engine, String biomeKey) {
-        return isReachableBiome(engine.getAllBiomes(), biomeKey);
+        return GenerationFindCatalog.biome(engine, biomeKey) != null;
     }
 
     static boolean isReachableBiome(Iterable<IrisBiome> biomes, String biomeKey) {
@@ -135,7 +136,8 @@ final class ModdedCommandSuggestions {
         try {
             Engine engine = IrisModdedCommands.engineFor(context.getSource().getLevel());
             if (engine != null) {
-                return SharedSuggestionProvider.suggest(engine.getDimension().getRegions(), builder);
+                return SharedSuggestionProvider.suggest(GenerationFindCatalog.regions(engine).stream()
+                        .map(region -> region.getLoadKey()), builder);
             }
         } catch (Throwable e) {
             warnTabFailure("region keys", context.getSource(), e);
@@ -148,7 +150,7 @@ final class ModdedCommandSuggestions {
         try {
             Engine engine = IrisModdedCommands.engineFor(context.getSource().getLevel());
             if (engine != null) {
-                return SharedSuggestionProvider.suggest(engine.getData().getObjectLoader().getPossibleKeys(), builder);
+                return SharedSuggestionProvider.suggest(GenerationFindCatalog.objectKeys(engine), builder);
             }
         } catch (Throwable e) {
             warnTabFailure("object keys", context.getSource(), e);
@@ -191,6 +193,7 @@ final class ModdedCommandSuggestions {
             Collection<String> unregisteredIrisKeys = eligibleUnregisteredEditableKeys(
                     irisKeys, registeredKeys,
                     (String candidate) -> IrisStructureLocator.hasNativePlacement(engine, candidate));
+            nativeKeys.addAll(GenerationFindCatalog.retainedStructureKeys(engine));
             return SharedSuggestionProvider.suggest(
                     combineStructureKeys(unregisteredIrisKeys, nativeKeys), builder);
         } catch (Throwable e) {

adapters/modded-common/src/main/java/art/arcane/iris/modded/command/ModdedLocateCommands.java

@@ -29,8 +29,9 @@ import art.arcane.iris.engine.framework.Locator;
 import art.arcane.iris.engine.framework.NativeStructureGenerationPolicy;
 import art.arcane.iris.engine.framework.StructureReachability;
 import art.arcane.iris.engine.framework.WrongEngineBroException;
+import art.arcane.iris.engine.history.GenerationSemanticQueries;
+import art.arcane.iris.engine.history.GenerationFindCatalog;
 import art.arcane.iris.engine.hydrology.HydrologyFeatureQuery;
-import art.arcane.iris.engine.hydrology.HydrologyFeatureRef;
 import art.arcane.iris.engine.hydrology.runtime.IrisHydrologyRuntime;
 import art.arcane.iris.engine.object.IrisBiome;
 import art.arcane.iris.engine.object.IrisNativeStructureDecision;
@@ -86,15 +87,11 @@ final class ModdedLocateCommands {
             IrisModdedCommands.fail(source, IrisLanguage.plain(ModdedCommandMessages.IRIS_MODDED_COMMANDS_THIS_DIMENSION_IS_NOT_GENERATED_BY_IRIS_8));
             return 0;
         }
-        IrisBiome biome = engine.getData().getBiomeLoader().load(key.trim());
+        IrisBiome biome = GenerationFindCatalog.biome(engine, key);
         if (biome == null) {
             IrisModdedCommands.fail(source, IrisLanguage.plain(ModdedCommandMessages.IRIS_MODDED_COMMANDS_UNKNOWN_BIOME_2, MessageArgument.untrusted("key", key)));
             return 0;
         }
-        if (!ModdedCommandSuggestions.isReachableBiome(engine, biome.getLoadKey())) {
-            IrisModdedCommands.fail(source, IrisLanguage.plain(ModdedCommandMessages.IRIS_MODDED_COMMANDS_IS_NOT_DEFINED_DIMENSION, MessageArgument.untrusted("value", biome.getLoadKey())));
-            return 0;
-        }
         locate(source, level, engine, player, Locator.surfaceBiome(biome.getLoadKey()), "biome " + biome.getLoadKey());
         return 1;
     }
@@ -111,15 +108,11 @@ final class ModdedLocateCommands {
             IrisModdedCommands.fail(source, IrisLanguage.plain(ModdedCommandMessages.IRIS_MODDED_COMMANDS_THIS_DIMENSION_IS_NOT_GENERATED_BY_IRIS_9));
             return 0;
         }
-        IrisRegion region = engine.getData().getRegionLoader().load(key.trim());
+        IrisRegion region = GenerationFindCatalog.region(engine, key);
         if (region == null) {
             IrisModdedCommands.fail(source, IrisLanguage.plain(ModdedCommandMessages.IRIS_MODDED_COMMANDS_UNKNOWN_REGION_2, MessageArgument.untrusted("key", key)));
             return 0;
         }
-        if (!engine.getDimension().getRegions().contains(region.getLoadKey())) {
-            IrisModdedCommands.fail(source, IrisLanguage.plain(ModdedCommandMessages.IRIS_MODDED_COMMANDS_IS_NOT_DEFINED_DIMENSION, MessageArgument.untrusted("value", region.getLoadKey())));
-            return 0;
-        }
         locate(source, level, engine, player, Locator.region(region.getLoadKey()), "region " + region.getLoadKey());
         return 1;
     }
@@ -132,7 +125,7 @@ final class ModdedLocateCommands {
             return 0;
         }
         String key = keyRaw.trim();
-        if (!engine.hasObjectPlacement(key)) {
+        if (!GenerationFindCatalog.hasObjectPlacement(engine, key)) {
             IrisModdedCommands.fail(source, IrisLanguage.plain(ModdedCommandMessages.IRIS_MODDED_COMMANDS_IS_NOT_CONFIGURED_ANY_REGION_BIOME_OBJECT_PLACEMENTS_OBJECT_KEYS, MessageArgument.untrusted("key", key), MessageArgument.untrusted("value", engine.getData().getObjectLoader().getPossibleKeys().length)));
             return 0;
         }
@@ -158,10 +151,6 @@ final class ModdedLocateCommands {
             return 0;
         }
         IrisHydrologyRuntime runtime = engine.getComplex().getHydrologyRuntime();
-        if (runtime == null) {
-            IrisModdedCommands.fail(source, "Hydrology is not active in this dimension.");
-            return 0;
-        }
         HydrologyFeatureQuery query;
         try {
             query = HydrologyFeatureQuery.parse(type);
@@ -171,15 +160,19 @@ final class ModdedLocateCommands {
         }
         int originX = player.blockPosition().getX();
         int originZ = player.blockPosition().getZ();
-        int requestedDistance = Math.min(8192, runtime.settings().routing().tileSize() * 15);
-        int maximumDistance = runtime.maximumFeatureSearchDistance(originX, originZ, requestedDistance);
+        int requestedDistance = runtime == null
+                ? 8192
+                : Math.min(8192, runtime.settings().routing().tileSize() * 15);
+        int maximumDistance = runtime == null
+                ? requestedDistance
+                : runtime.maximumFeatureSearchDistance(originX, originZ, requestedDistance);
         MinecraftServer server = source.getServer();
         IrisModdedCommands.ok(source, "Searching accepted hydrology plans for " + type + "...");
-        MultiBurst.burst.completeValueAsync(() -> runtime.nearestFeature(
-                        query.types(), query.profileKey(), originX, originZ, maximumDistance,
+        MultiBurst.burst.completeValueAsync(() -> GenerationSemanticQueries.nearestRiver(
+                        engine, query, originX, originZ, maximumDistance,
                         (int visited) -> server.execute(() -> IrisModdedCommands.ok(source,
                                 "Searched " + visited + " hydrology tiles for " + type + "..."))).orElse(null))
-                .whenComplete((HydrologyFeatureRef feature, Throwable error) -> server.execute(() -> {
+                .whenComplete((GenerationSemanticQueries.RiverResult feature, Throwable error) -> server.execute(() -> {
                     if (error != null) {
                         ModdedIrisLog.error("Hydrology locate failed for {}", type, error);
                         IrisModdedCommands.fail(source,
@@ -192,13 +185,12 @@ final class ModdedLocateCommands {
                                         + maximumDistance + " blocks.");
                         return;
                     }
-                    int worldY = feature.y() + engine.getDimension().getMinHeight() + 2;
                     teleportToStructure(
                             source,
                             level,
                             player,
                             feature.x(),
-                            worldY,
+                            feature.y() + 2,
                             feature.z(),
                             type + " hydrology feature"
                     );
@@ -225,8 +217,9 @@ final class ModdedLocateCommands {
         }
         Optional<NativeStructureTarget> resolved = resolveNativeStructure(source, level, engine, key);
         if (resolved.isEmpty()) {
-            if (!IrisStructureLocator.hasNativePlacement(engine, key)
-                    && IrisStructureLocator.hasLocatableEditablePlacement(engine, key)) {
+            if ((!IrisStructureLocator.hasNativePlacement(engine, key)
+                    && IrisStructureLocator.hasLocatableEditablePlacement(engine, key))
+                    || GenerationFindCatalog.hasRetainedStructurePlacement(engine, key)) {
                 locateIrisStructure(source, level, engine, player, key);
                 return 1;
             }
@@ -247,6 +240,10 @@ final class ModdedLocateCommands {
         if (!ModdedCommandSuggestions.isEligibleRegisteredStructure(
                 decision, nativePlacement, locatableNativePlacement, locatableEditableReplacement,
                 reachable, nativeGenerationEnabled)) {
+            if (GenerationFindCatalog.hasRetainedStructurePlacement(engine, key)) {
+                locateIrisStructure(source, level, engine, player, key);
+                return 1;
+            }
             IrisModdedCommands.fail(source, registeredStructureUnavailableMessage(
                     target.key(), target.availability(), decision,
                     nativePlacement, locatableNativePlacement,
@@ -312,7 +309,7 @@ final class ModdedLocateCommands {
         Thread thread = new Thread(() -> {
             try {
                 IrisStructureLocator.LocateResult result =
-                        IrisStructureLocator.locate(engine, key, blockX, blockZ, 1024);
+                        GenerationSemanticQueries.nearestStructure(engine, key, blockX, blockZ, 1024);
                 if (result.status() == IrisStructureLocator.LocateStatus.SEARCH_LIMIT_REACHED) {
                     server.execute(() -> IrisModdedCommands.fail(source, IrisLanguage.plain(ModdedCommandMessages.IRIS_MODDED_COMMANDS_UNABLE_LOCATE_IRIS_PLACED_STRUCTURE_DENSITY_SEARCH_SAFETY_LIMIT_WAS, MessageArgument.untrusted("key", key))));
                     return;

adapters/modded-common/src/main/java/art/arcane/iris/modded/command/ModdedStudioCommands.java

@@ -491,7 +491,7 @@ public final class ModdedStudioCommands {
         ModdedDimensionManager.Handle handle = null;
         try {
             replaceExistingStudio(server, owner, dimensionId);
-            handle = ModdedDimensionManager.create(server, dimensionId, pack, pack, seed);
+            handle = ModdedDimensionManager.createTransientStudio(server, dimensionId, pack, pack, seed);
             STUDIOS.put(owner, dimensionId);
             if (owner.equals(CONSOLE_OWNER)) {
                 completeConsoleOpen(source, dimensionId, pack, seed, handle);

adapters/modded-common/src/main/java/art/arcane/iris/modded/command/ModdedWorldCommands.java

@@ -78,6 +78,7 @@ public final class ModdedWorldCommands {
 
         root.then(enableTree("enable"));
         root.then(enableTree("create"));
+        root.then(updateTree());
         root.then(replaceOverworldTree());
         root.then(mainWorldTree());
 
@@ -110,6 +111,20 @@ public final class ModdedWorldCommands {
                         .executes(ModdedCommandTree.localized((CommandContext<CommandSourceStack> context) -> disable(context.getSource(), dimensionArgument(context), false))));
     }
 
+    private static LiteralArgumentBuilder<CommandSourceStack> updateTree() {
+        return Commands.literal("update")
+                .then(Commands.argument("dimension", IdentifierArgument.id()).suggests(LOADED_DIMENSIONS)
+                        .then(Commands.argument("pack", StringArgumentType.string())
+                                .suggests(IrisModdedCommands.PACK_NAMES)
+                                .executes(ModdedCommandTree.localized(
+                                        (CommandContext<CommandSourceStack> context) -> update(
+                                                context.getSource(),
+                                                dimensionArgument(context),
+                                                StringArgumentType.getString(context, "pack")
+                                        )
+                                ))));
+    }
+
     private static LiteralArgumentBuilder<CommandSourceStack> deleteTree(String name) {
         return Commands.literal(name)
                 .then(Commands.argument("dimension", IdentifierArgument.id()).suggests(LOADED_DIMENSIONS)
@@ -197,6 +212,47 @@ public final class ModdedWorldCommands {
         return 1;
     }
 
+    private static int update(CommandSourceStack source, String targetDimension, String packRaw) {
+        String dimensionId;
+        try {
+            dimensionId = normalizeDimensionId(targetDimension);
+        } catch (IllegalArgumentException failure) {
+            IrisModdedCommands.fail(source, failure.getMessage());
+            return 0;
+        }
+        String[] packRef = parsePackRef(packRaw);
+        String pack = packRef[0];
+        String packDimension = packRef[1];
+        if (!validPackRef(source, pack, packDimension)
+                || blockIfPackBroken(source, dimensionId, pack)
+                || !loadPackDimension(source, pack, packDimension)) {
+            return 0;
+        }
+        try {
+            ModdedDimensionManager.UpdateResult result = ModdedDimensionManager.stagePersistentUpdate(
+                    source.getServer(),
+                    dimensionId,
+                    pack,
+                    packDimension
+            );
+            if (result.restartRequired()) {
+                IrisModdedCommands.ok(source, "Iris world update staged for " + dimensionId
+                        + " from " + pack + ":" + packDimension
+                        + ". Restart the server to activate it; the running world remains on its current pack.");
+            } else {
+                IrisModdedCommands.ok(source, "Iris world " + dimensionId
+                        + " already uses this immutable pack; no restart is required.");
+            }
+            return 1;
+        } catch (Throwable failure) {
+            ModdedIrisLog.error("Iris world update staging failed for {} (pack={} dim={})",
+                    dimensionId, pack, packDimension, failure);
+            IrisModdedCommands.fail(source, "Iris world update failed for " + dimensionId
+                    + ": " + IrisLanguage.errorDetail(failure));
+            return 0;
+        }
+    }
+
     private static int replaceOverworld(CommandSourceStack source, String packRaw, String seedRaw) {
         MinecraftServer server = source.getServer();
         Long seed = parseSeed(source, seedRaw);

adapters/modded-common/src/test/java/art/arcane/iris/modded/IrisModdedStructureParityTest.java

@@ -18,6 +18,7 @@ import java.io.IOException;
 import java.nio.file.Files;
 import java.nio.file.Path;
 import java.util.List;
+import java.util.Locale;
 import java.util.Set;
 import java.util.concurrent.CountDownLatch;
 import java.util.concurrent.ExecutorService;
@@ -267,10 +268,11 @@ public class IrisModdedStructureParityTest {
                 .setInferredType(InferredType.SEA);
 
         Set<String> keys = ModdedDimensionMetadata.collectConfiguredBiomeKeys(
-                List.of(ocean, custom, shore, unsafeSea), "OverWorld");
+                List.of(ocean, custom, shore, unsafeSea),
+                customBiome -> "iris:biomes/" + customBiome.getId().toLowerCase(Locale.ROOT));
 
         assertEquals(Set.of("minecraft:deep_ocean", "minecraft:forest", "minecraft:beach",
-                "minecraft:the_void", "overworld:aurora"), keys);
+                "minecraft:the_void", "iris:biomes/aurora"), keys);
         assertFalse(keys.contains("minecraft:desert"));
         assertFalse(keys.contains("minecraft:plains"));
 

adapters/modded-common/src/test/java/art/arcane/iris/modded/ModdedForcedDatapackTest.java

@@ -52,6 +52,19 @@ public class ModdedForcedDatapackTest {
         assertEquals("iris:overworld", ModdedWorldgenIds.generatorIdentity("overworld"));
         assertEquals("iris:other/overworld",
                 ModdedWorldgenIds.generatorIdentity("other:overworld"));
+        assertEquals(
+                new ModdedWorldgenIds.ScopedDimension("overworld", "overworld"),
+                ModdedWorldgenIds.scopedDimensionType(
+                        ModdedWorldgenIds.dimensionTypeRef("overworld", "overworld")
+                ).orElseThrow()
+        );
+        assertEquals(
+                List.of(
+                        ModdedWorldgenIds.biomeRef("overworld", "overworld", "mist"),
+                        "overworld:mist"
+                ),
+                ModdedWorldgenIds.legacyBiomeRefs("overworld", "overworld", "mist")
+        );
     }
 
     @Test
@@ -148,6 +161,24 @@ public class ModdedForcedDatapackTest {
         }
     }
 
+    @Test
+    public void rejectsConflictingRegistryDefinitionsDuringMerge() throws IOException {
+        Path root = Files.createTempDirectory("iris-forced-pack-conflict");
+        try {
+            Path source = Files.createDirectories(root.resolve("source/data/iris/worldgen/biome"));
+            Path destination = Files.createDirectories(root.resolve("destination/data/iris/worldgen/biome"));
+            Files.writeString(source.resolve("shared.json"), "{\"temperature\":1}", StandardCharsets.UTF_8);
+            Files.writeString(destination.resolve("shared.json"), "{\"temperature\":2}", StandardCharsets.UTF_8);
+
+            assertThrows(
+                    IOException.class,
+                    () -> ModdedForcedDatapack.mergeDirectory(root.resolve("source"), root.resolve("destination"))
+            );
+        } finally {
+            deleteTree(root);
+        }
+    }
+
     private List<String> directoryEntries(Path root) throws IOException {
         try (Stream<Path> entries = Files.list(root)) {
             return entries.map((Path path) -> path.getFileName().toString())

adapters/modded-common/src/test/java/art/arcane/iris/modded/ModdedGenerationHistoryRoutingContractTest.java

@@ -0,0 +1,180 @@
+package art.arcane.iris.modded;
+
+import org.junit.Test;
+
+import java.io.IOException;
+import java.nio.file.Files;
+import java.nio.file.Path;
+
+import static org.junit.Assert.assertFalse;
+import static org.junit.Assert.assertTrue;
+
+public class ModdedGenerationHistoryRoutingContractTest {
+    private static final String SOURCE_ROOT_PROPERTY = "iris.moddedCommonSources";
+
+    @Test
+    public void startupPublishesOnlyAnImmutableHistoryBoundRuntime() throws IOException {
+        String source = source("ModdedWorldEngines.java");
+        String create = method(source, "private static Engine create(");
+        String createHistoryEngine = method(source, "private static Engine createHistoryEngine(");
+        String buildEngine = method(source, "private static IrisEngine buildEngine(");
+
+        assertTrue(create.contains("ModdedGenerationHistoryStorage.openOrAdopt("));
+        assertFalse(create.contains("resolvePack("));
+        assertTrue(createHistoryEngine.contains("candidate.attachGenerationHistory("));
+        assertTrue(createHistoryEngine.contains("IrisBoundarySignatureSampler.INSTANCE"));
+        assertTrue(createHistoryEngine.contains("getGenerationTransitionWidthBlocks()"));
+        assertTrue(createHistoryEngine.contains("router.preloadActiveRuntimes();"));
+        assertBefore(createHistoryEngine, "close(candidate);", "ModdedGenerationHistoryStorage.resolveActive(history)");
+        assertTrue(createHistoryEngine.contains("GenerationHistoryRuntimeRouter.attach("));
+        assertTrue(buildEngine.contains("active.packRoot().toFile()"));
+        assertTrue(buildEngine.contains("history.paths().activationMantleRoot(activation.activationId())"));
+        assertTrue(buildEngine.contains("epoch.kernelVersion()"));
+        assertTrue(buildEngine.contains("transitionPlan"));
+    }
+
+    @Test
+    public void onlyExplicitTransientStudioEnginesBypassHistory() throws IOException {
+        String manager = source("ModdedDimensionManager.java");
+        String transientCreate = method(manager, "public static Handle createTransientStudio(");
+        String persistentCreate = method(manager, "public static Handle createPersistent(");
+        String engines = source("ModdedWorldEngines.java");
+        String studio = method(engines, "private static IrisEngine createTransientStudioEngine(");
+        String generator = source("IrisModdedChunkGenerator.java");
+        String bypass = method(generator, "boolean allowsGenerationHistoryBypass(");
+        String route = method(generator, "private GenerationHistoryRuntimeRouter.RuntimeRoute openHistoryRoute(");
+
+        assertTrue(transientCreate.contains("ModdedGenerationMode.TRANSIENT_STUDIO"));
+        assertTrue(persistentCreate.contains("ModdedGenerationMode.PERSISTENT_CREATE"));
+        assertTrue(studio.contains("IrisData.openRuntime(packDir)"));
+        assertTrue(studio.contains("IrisEngine.InitializationMode.STUDIO"));
+        assertFalse(studio.contains("ModdedGenerationHistoryStorage"));
+        assertFalse(studio.contains("attachGenerationHistory("));
+        assertTrue(bypass.contains("generationMode != ModdedGenerationMode.TRANSIENT_STUDIO"));
+        assertTrue(bypass.contains("irisEngine.isStudio()"));
+        assertTrue(bypass.contains("Only an explicitly transient Iris Studio engine"));
+        assertBefore(route, "allowsGenerationHistoryBypass(current)", "requireHistoryRouter(current, operation)");
+    }
+
+    @Test
+    public void everyCoordinateBearingChunkStageOpensItsRoutedRuntime() throws IOException {
+        String source = source("IrisModdedChunkGenerator.java");
+
+        assertRuntimeRoute(source, "public Pair<BlockPos, Holder<Structure>> findNearestMapStructure(");
+        assertCoordinateRoute(source, "public WeightedList<MobSpawnSettings.SpawnerData> getMobsAt(");
+        assertRuntimeRoute(source, "public CompletableFuture<ChunkAccess> createBiomes(");
+        assertRuntimeRoute(source, "public void applyCarvers(");
+        assertRuntimeRoute(source, "public void buildSurface(");
+        assertRuntimeRoute(source, "public void applyBiomeDecoration(");
+        assertRuntimeRoute(source, "public void createStructures(");
+        assertRuntimeRoute(source, "public void createReferences(");
+        assertRuntimeRoute(source, "public void spawnOriginalMobs(");
+        assertCoordinateRoute(source, "public int getBaseHeight(");
+        assertCoordinateRoute(source, "public NoiseColumn getBaseColumn(");
+    }
+
+    @Test
+    public void asyncTerrainKeepsTheRouteUntilDurableSemanticClaim() throws IOException {
+        String source = source("IrisModdedChunkGenerator.java");
+        String fill = method(source, "public CompletableFuture<ChunkAccess> fillFromNoise(");
+        String terrain = method(source, "private ChunkAccess generateTerrain(");
+        String completion = method(source, "private static CompletableFuture<ChunkAccess> closeRouteOnCompletion(");
+
+        assertBefore(fill, "openHistoryRoute(", "CompletableFuture.supplyAsync(");
+        assertTrue(fill.contains("generateTerrain(chunk, generationEngine, pos, air, route)"));
+        assertTrue(fill.contains("return closeRouteOnCompletion(pipeline, route);"));
+        assertTrue(terrain.contains("openHistoryRuntimeScope(route)"));
+        assertBefore(terrain, "generationEngine.generate(", "route.claimGeneratedSemantics();");
+        assertBefore(terrain, "route.claimGeneratedSemantics();", "return chunk;");
+        assertTrue(completion.contains("pipeline.whenComplete("));
+        assertTrue(completion.contains("route.close();"));
+    }
+
+    @Test
+    public void biomeQueriesRouteEachCoordinateAndKeepRuntimeSpecificCaches() throws IOException {
+        String source = source("IrisModdedBiomeSource.java");
+        String structure = method(source, "public Holder<Biome> getNoiseBiome(");
+        String visible = method(source, "Holder<Biome> getVisibleNoiseBiome(");
+        String batch = method(source, "public Set<Holder<Biome>> getBiomesWithin(");
+        String resolution = method(source, "private Holder<Biome> resolveVisibleBiome(");
+
+        assertTrue(structure.contains("openHistoryCoordinateScope("));
+        assertTrue(visible.contains("openHistoryCoordinateScope("));
+        assertTrue(batch.contains("quartX << 2, quartZ << 2"));
+        assertTrue(source.contains("int runtimeIdentity = engine.getCacheID();"));
+        assertTrue(source.contains("cache.get(runtimeIdentity, key)"));
+        assertTrue(source.contains("cache.put(runtimeIdentity, key, resolved)"));
+        assertBefore(resolution, "historicalPhysicalBiomeKeyAt(", "ModdedWorldgenIds.biomeRef(engine");
+    }
+
+    @Test
+    public void discreteStagesResumeIncompleteHistoricalChunksAndRejectTransitionOwnership() throws IOException {
+        String generator = source("IrisModdedChunkGenerator.java");
+        String discrete = method(generator, "private boolean allowsRoutedDiscreteGeneration(");
+        String decoration = method(generator, "public void applyBiomeDecoration(");
+        String structures = method(generator, "public void createStructures(");
+        String mobs = method(generator, "public void spawnOriginalMobs(");
+        String nativeStage = source("ModdedNativeStructureStage.java");
+        String adjust = method(nativeStage, "void adjustGeneratedStructures(");
+        String place = method(nativeStage, "void placeVanillaStructures(");
+
+        assertTrue(discrete.contains("chunk.getPersistedStatus().isOrAfter(stage)"));
+        assertFalse(discrete.contains("router.history().activeActivation().activationId()"));
+        assertFalse(discrete.contains("return true;"));
+        assertTrue(discrete.contains("allowsNewGenerationChunk("));
+        assertTrue(decoration.contains("ChunkStatus.FEATURES"));
+        assertTrue(structures.contains("ChunkStatus.STRUCTURE_STARTS"));
+        assertTrue(mobs.contains("ChunkStatus.SPAWN"));
+        assertBefore(decoration, "allowsRoutedDiscreteGeneration(", "nativeStructures.placeVanillaStructures(");
+        assertBefore(structures, "allowsRoutedDiscreteGeneration(", "super.createStructures(");
+        assertBefore(mobs, "allowsRoutedDiscreteGeneration(", "NaturalSpawner.spawnMobsForChunkGeneration(");
+        assertBefore(adjust, "allowsNewGenerationFootprint(", "recordWorldCheckStructureShift(");
+        assertTrue(place.contains("allowsNewGenerationFootprint("));
+    }
+
+    private static void assertRuntimeRoute(String source, String signature) {
+        String body = method(source, signature);
+        assertTrue(signature + " must open a generation-history route", body.contains("openHistoryRoute("));
+        assertTrue(signature + " must open its routed runtime", body.contains("openHistoryRuntimeScope(route)"));
+    }
+
+    private static void assertCoordinateRoute(String source, String signature) {
+        String body = method(source, signature);
+        assertTrue(signature + " must route its coordinate", body.contains("openHistoryCoordinateScope("));
+    }
+
+    private static void assertBefore(String source, String first, String second) {
+        int firstIndex = source.indexOf(first);
+        int secondIndex = source.indexOf(second);
+        assertTrue("Missing source contract token: " + first, firstIndex >= 0);
+        assertTrue("Missing source contract token: " + second, secondIndex >= 0);
+        assertTrue(first + " must occur before " + second, firstIndex < secondIndex);
+    }
+
+    private static String source(String fileName) throws IOException {
+        String sourceRoot = System.getProperty(SOURCE_ROOT_PROPERTY);
+        assertTrue("Missing system property " + SOURCE_ROOT_PROPERTY,
+                sourceRoot != null && !sourceRoot.isBlank());
+        return Files.readString(Path.of(sourceRoot, "art", "arcane", "iris", "modded", fileName));
+    }
+
+    private static String method(String source, String signature) {
+        int start = source.indexOf(signature);
+        assertTrue("Missing source contract signature: " + signature, start >= 0);
+        int openBrace = source.indexOf('{', start);
+        assertTrue("Missing source contract method body: " + signature, openBrace >= 0);
+        int depth = 0;
+        for (int index = openBrace; index < source.length(); index++) {
+            char current = source.charAt(index);
+            if (current == '{') {
+                depth++;
+            } else if (current == '}') {
+                depth--;
+                if (depth == 0) {
+                    return source.substring(start, index + 1);
+                }
+            }
+        }
+        throw new IllegalArgumentException("Unclosed source contract method: " + signature);
+    }
+}

adapters/modded-common/src/test/java/art/arcane/iris/modded/ModdedGenerationHistoryStorageTest.java

@@ -0,0 +1,362 @@
+package art.arcane.iris.modded;
+
+import art.arcane.iris.engine.history.GenerationEpoch;
+import art.arcane.iris.engine.history.GenerationEpochContractFactory;
+import art.arcane.iris.engine.history.GenerationHistory;
+import art.arcane.iris.engine.history.GenerationPackFingerprint;
+import art.arcane.iris.engine.history.GenerationRegistryContract;
+import org.junit.Test;
+
+import java.io.IOException;
+import java.nio.charset.StandardCharsets;
+import java.nio.file.Files;
+import java.nio.file.Path;
+import java.util.Collection;
+import java.util.Comparator;
+import java.util.Map;
+import java.util.TreeMap;
+import java.util.concurrent.atomic.AtomicInteger;
+import java.util.stream.Stream;
+
+import static org.junit.Assert.assertEquals;
+import static org.junit.Assert.assertNotEquals;
+import static org.junit.Assert.assertThrows;
+import static org.junit.Assert.assertTrue;
+
+public class ModdedGenerationHistoryStorageTest {
+    private static final String DIMENSION_FINGERPRINT = "11".repeat(32);
+    private static final String DEFINITION_FINGERPRINT = "22".repeat(32);
+    private static final int TRANSITION_WIDTH_BLOCKS = 256;
+
+    @Test
+    public void newDimensionPublishesAnImmutableWorldLocalPack() throws IOException {
+        Path root = Files.createTempDirectory("iris-modded-history-create");
+        try {
+            Path source = pack(root.resolve("global-pack"), "first");
+            ModdedGenerationHistoryStorage.Candidate candidate = candidate(source, registryContract());
+            GenerationHistory history = ModdedGenerationHistoryStorage.createOrStage(
+                    root.resolve("world-dimension"),
+                    source,
+                    41L,
+                    candidate,
+                    ModdedGenerationHistoryStorageTest::union,
+                    TRANSITION_WIDTH_BLOCKS
+            );
+
+            Path activePack = history.activePackRoot();
+            assertEquals("first", Files.readString(activePack.resolve("content.txt"), StandardCharsets.UTF_8));
+            Files.writeString(source.resolve("content.txt"), "mutated", StandardCharsets.UTF_8);
+            assertEquals("first", Files.readString(activePack.resolve("content.txt"), StandardCharsets.UTF_8));
+            assertEquals(candidate.packFingerprint(), history.activeEpoch().packFingerprint());
+        } finally {
+            deleteTree(root);
+        }
+    }
+
+    @Test
+    public void existingDimensionAdoptsItsSelectedPackOnlyOnce() throws IOException {
+        Path root = Files.createTempDirectory("iris-modded-history-adopt");
+        try {
+            Path source = pack(root.resolve("global-pack"), "adopted");
+            Path dimensionRoot = root.resolve("world-dimension");
+            AtomicInteger sourceReads = new AtomicInteger();
+            ModdedGenerationHistoryStorage.AdoptionSourceSupplier supplier = () -> {
+                sourceReads.incrementAndGet();
+                return new ModdedGenerationHistoryStorage.AdoptionSource(
+                        source,
+                        candidate(source, registryContract())
+                );
+            };
+
+            GenerationHistory adopted = ModdedGenerationHistoryStorage.restoreOrAdopt(
+                    dimensionRoot,
+                    91L,
+                    supplier,
+                    ModdedGenerationHistoryStorageTest::union
+            );
+            String epochId = adopted.activeEpoch().epochId();
+            Files.writeString(source.resolve("content.txt"), "changed", StandardCharsets.UTF_8);
+            GenerationHistory restored = ModdedGenerationHistoryStorage.restoreOrAdopt(
+                    dimensionRoot,
+                    91L,
+                    supplier,
+                    ModdedGenerationHistoryStorageTest::union
+            );
+
+            assertEquals(1, sourceReads.get());
+            assertEquals(epochId, restored.activeEpoch().epochId());
+            assertEquals("adopted", Files.readString(
+                    restored.activePackRoot().resolve("content.txt"),
+                    StandardCharsets.UTF_8
+            ));
+        } finally {
+            deleteTree(root);
+        }
+    }
+
+    @Test
+    public void selectedUpdateStagesWithoutReplacingTheActivePack() throws IOException {
+        Path root = Files.createTempDirectory("iris-modded-history-stage");
+        try {
+            Path dimensionRoot = root.resolve("world-dimension");
+            Path first = pack(root.resolve("first-pack"), "first");
+            GenerationHistory created = ModdedGenerationHistoryStorage.createOrStage(
+                    dimensionRoot,
+                    first,
+                    5L,
+                    candidate(first, registryContract()),
+                    ModdedGenerationHistoryStorageTest::union,
+                    TRANSITION_WIDTH_BLOCKS
+            );
+            String activeEpoch = created.activeEpoch().epochId();
+            Path second = pack(root.resolve("second-pack"), "second");
+            GenerationHistory staged = ModdedGenerationHistoryStorage.createOrStage(
+                    dimensionRoot,
+                    second,
+                    5L,
+                    candidate(second, registryContract()),
+                    ModdedGenerationHistoryStorageTest::union,
+                    TRANSITION_WIDTH_BLOCKS
+            );
+
+            assertEquals(activeEpoch, staged.activeEpoch().epochId());
+            assertTrue(staged.pendingActivation().isPresent());
+            assertNotEquals(activeEpoch, staged.pendingActivation().orElseThrow().epochId());
+            assertEquals("first", Files.readString(
+                    staged.activePackRoot().resolve("content.txt"),
+                    StandardCharsets.UTF_8
+            ));
+            assertEquals("second", Files.readString(
+                    staged.packRoot(staged.pendingActivation().orElseThrow().activationId()).resolve("content.txt"),
+                    StandardCharsets.UTF_8
+            ));
+        } finally {
+            deleteTree(root);
+        }
+    }
+
+    @Test
+    public void unavailableUpdateRegistryDoesNotCreatePendingActivation() throws IOException {
+        Path root = Files.createTempDirectory("iris-modded-history-stage-registry");
+        try {
+            Path dimensionRoot = root.resolve("world-dimension");
+            Path first = pack(root.resolve("first-pack"), "first");
+            GenerationHistory history = ModdedGenerationHistoryStorage.createOrStage(
+                    dimensionRoot,
+                    first,
+                    63L,
+                    candidate(first, registryContract()),
+                    ModdedGenerationHistoryStorageTest::union,
+                    TRANSITION_WIDTH_BLOCKS
+            );
+            Path second = pack(root.resolve("second-pack"), "second");
+
+            assertThrows(IOException.class, () -> ModdedGenerationHistoryStorage.createOrStage(
+                    dimensionRoot,
+                    second,
+                    63L,
+                    candidate(second, registryContract()),
+                    contracts -> GenerationRegistryContract.empty(),
+                    TRANSITION_WIDTH_BLOCKS
+            ));
+
+            assertTrue(history.pendingActivation().isEmpty());
+            assertEquals("first", Files.readString(
+                    history.activePackRoot().resolve("content.txt"),
+                    StandardCharsets.UTF_8
+            ));
+        } finally {
+            deleteTree(root);
+        }
+    }
+
+    @Test
+    public void updateWithANewCustomBiomeKeyStagesBeforeThatKeyIsRegistered() throws IOException {
+        Path root = Files.createTempDirectory("iris-modded-history-new-biome");
+        try {
+            Path dimensionRoot = root.resolve("world-dimension");
+            Path first = pack(root.resolve("first-pack"), "first");
+            GenerationRegistryContract activeContract = registryContract("minecraft:plains");
+            ModdedGenerationHistoryStorage.createOrStage(
+                    dimensionRoot,
+                    first,
+                    71L,
+                    candidate(first, activeContract),
+                    ModdedGenerationHistoryStorageTest::union,
+                    TRANSITION_WIDTH_BLOCKS
+            );
+            Path second = pack(root.resolve("second-pack"), "second");
+            GenerationRegistryContract candidateContract = registryContract(
+                    "iris:biomes/aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa"
+            );
+            AtomicInteger validationCalls = new AtomicInteger();
+
+            GenerationHistory staged = ModdedGenerationHistoryStorage.createOrStage(
+                    dimensionRoot,
+                    second,
+                    71L,
+                    candidate(second, candidateContract),
+                    contracts -> {
+                        validationCalls.incrementAndGet();
+                        assertEquals(1, contracts.size());
+                        assertEquals(activeContract, contracts.iterator().next());
+                        return union(contracts);
+                    },
+                    TRANSITION_WIDTH_BLOCKS
+            );
+
+            assertEquals(1, validationCalls.get());
+            assertTrue(staged.pendingActivation().isPresent());
+            assertEquals(
+                    candidateContract,
+                    staged.manifest()
+                            .epoch(staged.pendingActivation().orElseThrow().epochId())
+                            .orElseThrow()
+                            .registryContract()
+            );
+        } finally {
+            deleteTree(root);
+        }
+    }
+
+    @Test
+    public void restoreRejectsASeedMismatchBeforeConsultingTheGlobalPack() throws IOException {
+        Path root = Files.createTempDirectory("iris-modded-history-seed");
+        try {
+            Path source = pack(root.resolve("global-pack"), "seeded");
+            Path dimensionRoot = root.resolve("world-dimension");
+            ModdedGenerationHistoryStorage.createOrStage(
+                    dimensionRoot,
+                    source,
+                    123L,
+                    candidate(source, registryContract()),
+                    ModdedGenerationHistoryStorageTest::union,
+                    TRANSITION_WIDTH_BLOCKS
+            );
+            AtomicInteger sourceReads = new AtomicInteger();
+
+            assertThrows(IOException.class, () -> ModdedGenerationHistoryStorage.restoreOrAdopt(
+                    dimensionRoot,
+                    124L,
+                    () -> {
+                        sourceReads.incrementAndGet();
+                        return new ModdedGenerationHistoryStorage.AdoptionSource(
+                                source,
+                                candidate(source, registryContract())
+                        );
+                    },
+                    ModdedGenerationHistoryStorageTest::union
+            ));
+            assertEquals(0, sourceReads.get());
+        } finally {
+            deleteTree(root);
+        }
+    }
+
+    @Test
+    public void restoreRejectsUnavailableRetainedRegistryDefinitions() throws IOException {
+        Path root = Files.createTempDirectory("iris-modded-history-registry");
+        try {
+            Path source = pack(root.resolve("global-pack"), "registry");
+            Path dimensionRoot = root.resolve("world-dimension");
+            ModdedGenerationHistoryStorage.createOrStage(
+                    dimensionRoot,
+                    source,
+                    12L,
+                    candidate(source, registryContract()),
+                    ModdedGenerationHistoryStorageTest::union,
+                    TRANSITION_WIDTH_BLOCKS
+            );
+
+            assertThrows(IOException.class, () -> ModdedGenerationHistoryStorage.restoreOrAdopt(
+                    dimensionRoot,
+                    12L,
+                    () -> {
+                        throw new AssertionError("Existing history consulted the global pack");
+                    },
+                    contracts -> GenerationRegistryContract.empty()
+            ));
+        } finally {
+            deleteTree(root);
+        }
+    }
+
+    private static ModdedGenerationHistoryStorage.Candidate candidate(
+            Path source,
+            GenerationRegistryContract registryContract
+    ) throws IOException {
+        return new ModdedGenerationHistoryStorage.Candidate(
+                GenerationPackFingerprint.compute(source, GenerationPackFingerprint.CURRENT_VERSION),
+                dimensionContract(),
+                registryContract
+        );
+    }
+
+    private static GenerationEpoch.DimensionContract dimensionContract() {
+        return new GenerationEpoch.DimensionContract(
+                "surface",
+                "irisworldgen:packs/7061636b/dimensions/73757266616365/dimension_type",
+                "NORMAL",
+                "OVERWORLD",
+                127,
+                -64,
+                384,
+                384,
+                1D,
+                false,
+                "none",
+                0,
+                "0".repeat(64),
+                GenerationEpochContractFactory.CURRENT_DIMENSION_TYPE_FINGERPRINT_SCHEMA,
+                DIMENSION_FINGERPRINT
+        );
+    }
+
+    private static GenerationRegistryContract registryContract() {
+        return registryContract("minecraft:stone");
+    }
+
+    private static GenerationRegistryContract registryContract(String resourceKey) {
+        return GenerationRegistryContract.fromDefinitions(Map.of(
+                new GenerationRegistryContract.PhysicalResourceKey(
+                        resourceKey.startsWith("iris:biomes/")
+                                ? "minecraft:worldgen/biome"
+                                : "minecraft:block",
+                        resourceKey
+                ),
+                DEFINITION_FINGERPRINT
+        ));
+    }
+
+    private static GenerationRegistryContract union(Collection<GenerationRegistryContract> contracts)
+            throws IOException {
+        TreeMap<GenerationRegistryContract.PhysicalResourceKey, String> definitions = new TreeMap<>();
+        for (GenerationRegistryContract contract : contracts) {
+            for (Map.Entry<GenerationRegistryContract.PhysicalResourceKey, String> entry
+                    : contract.definitions().entrySet()) {
+                String previous = definitions.putIfAbsent(entry.getKey(), entry.getValue());
+                if (previous != null && !previous.equals(entry.getValue())) {
+                    throw new IOException("Conflicting registry definition");
+                }
+            }
+        }
+        return GenerationRegistryContract.fromDefinitions(definitions);
+    }
+
+    private static Path pack(Path root, String content) throws IOException {
+        Files.createDirectories(root);
+        Files.writeString(root.resolve("content.txt"), content, StandardCharsets.UTF_8);
+        return root;
+    }
+
+    private static void deleteTree(Path root) throws IOException {
+        if (!Files.exists(root)) {
+            return;
+        }
+        try (Stream<Path> walk = Files.walk(root)) {
+            for (Path path : walk.sorted(Comparator.reverseOrder()).toList()) {
+                Files.deleteIfExists(path);
+            }
+        }
+    }
+}

adapters/modded-common/src/test/java/art/arcane/iris/modded/ModdedGenerationLeaseContractTest.java

@@ -26,7 +26,9 @@ public class ModdedGenerationLeaseContractTest {
         assertTrue(source.contains("catch (GenerationSessionException e)"));
         assertTrue(source.contains("e.isExpectedTeardown()"));
         assertTrue(source.contains("Iris structure biome key lookup was rejected during an engine transition"));
-        assertTrue(source.contains("source.clearCache()"));
+        assertTrue(source.contains("int runtimeIdentity = engine.getCacheID();"));
+        assertTrue(source.contains("cache.get(runtimeIdentity, key)"));
+        assertTrue(source.contains("cache.put(runtimeIdentity, key, resolved)"));
     }
 
     @Test
@@ -203,7 +205,7 @@ public class ModdedGenerationLeaseContractTest {
         String jobSource = source("art/arcane/iris/modded/command/ModdedPregenJob.java");
         String start = method(jobSource, "public static boolean start(");
         int taskConstruction = start.indexOf("PregenTask task = PregenTask.builder()");
-        int profileMutation = start.indexOf("PregenPerformanceProfile.apply(engine);");
+        int profileMutation = start.indexOf("PregenPerformanceProfile.apply(engine)");
 
         assertTrue(taskConstruction >= 0);
         assertTrue(profileMutation > taskConstruction);

adapters/modded-common/src/test/java/art/arcane/iris/modded/ModdedLifecycleFailureContractTest.java

@@ -14,15 +14,16 @@ public class ModdedLifecycleFailureContractTest {
     private static final String SOURCE_ROOT_PROPERTY = "iris.moddedCommonSources";
 
     @Test
-    public void existingDimensionRepointBindsBeforeHandlePublication() throws IOException {
+    public void existingDimensionStagesWithoutReplacingTheLiveEngine() throws IOException {
         String managerSource = source("ModdedDimensionManager.java");
-        String create = method(managerSource, "public static Handle create(");
+        String create = method(managerSource, "private static Handle create(");
         int existingStart = requiredIndex(create, "if (existing != null");
         int presentStart = requiredIndex(create, "if (serverAccess.hasLevel(server, key))", existingStart + 1);
         int injectionStart = requiredIndex(create, "try {", presentStart);
 
-        assertRepointBeforePublication(create.substring(existingStart, presentStart));
-        assertRepointBeforePublication(create.substring(presentStart, injectionStart));
+        assertFalse(create.substring(existingStart, presentStart).contains("repointAndBind("));
+        assertFalse(create.substring(presentStart, injectionStart).contains("repointAndBind("));
+        assertBefore(create, "ModdedGenerationHistoryStorage.createOrStage(", "if (existing != null");
 
         String generatorSource = source("IrisModdedChunkGenerator.java");
         String repointAndBind = method(generatorSource, "void repointAndBind(");
@@ -40,6 +41,31 @@ public class ModdedLifecycleFailureContractTest {
         assertFalse(installReplacement.contains("catch ("));
     }
 
+    @Test
+    public void persistentPackUpdatesUseAnExplicitRestartBoundPath() throws IOException {
+        String managerSource = source("ModdedDimensionManager.java");
+        String createPersistent = method(managerSource, "public static Handle createPersistent(");
+        String update = method(managerSource, "public static UpdateResult stagePersistentUpdate(");
+
+        assertBefore(createPersistent, "if (previous != null)", "ModdedDimensionRegistryStore.put(");
+        assertTrue(createPersistent.contains("Use the Iris world update command"));
+        assertTrue(update.contains("ModdedGenerationHistoryStorage.createOrStage("));
+        assertTrue(update.contains("active.history().pendingActivation()"));
+        assertTrue(update.contains("restartRequired()"));
+        assertFalse(update.contains("inject("));
+        assertFalse(update.contains("repointAndBind("));
+        assertBefore(update, "ModdedDimensionRegistryStore.put(server, updated);",
+                "ModdedGenerationHistoryStorage.createOrStage(");
+        assertTrue(update.contains("ModdedDimensionRegistryStore.put(server, previous);"));
+
+        String commandsSource = source("command/ModdedWorldCommands.java");
+        assertTrue(commandsSource.contains("root.then(updateTree());"));
+        String command = method(commandsSource, "private static int update(");
+        assertTrue(command.contains("ModdedDimensionManager.stagePersistentUpdate("));
+        assertTrue(command.contains("Restart the server to activate it"));
+        assertTrue(command.contains("running world remains on its current pack"));
+    }
+
     @Test
     public void injectionBindsBeforeRegistrationAndRollsBackEveryFailure() throws IOException {
         String source = source("ModdedDimensionManager.java");
@@ -110,18 +136,13 @@ public class ModdedLifecycleFailureContractTest {
     }
 
     @Test
-    public void packDimensionLoadingNeverSuppressesTheFailureAsNull() throws IOException {
-        String source = source("ModdedDimensionManager.java");
-        String loading = method(source, "private static IrisDimension loadPackDimension(");
+    public void persistentRestoreOpensHistoryBeforeConsultingTheGlobalPack() throws IOException {
+        String source = source("ModdedGenerationHistoryStorage.java");
+        String restore = method(source, "static GenerationHistory restoreOrAdopt(");
 
-        assertFalse(loading.contains("return null;"));
-        assertFalse(loading.contains("e.toString()"));
-        int catchIndex = loading.indexOf("catch (");
-        if (catchIndex >= 0) {
-            String failure = blockAt(loading, requiredIndex(loading, "{", catchIndex));
-            assertTrue(failure.contains("throw "));
-            assertTrue(failure.contains(", e);") || failure.contains("throw e;"));
-        }
+        assertBefore(restore, "GenerationHistory.openIfPresent(", "sourceSupplier\").get();");
+        assertTrue(restore.contains("if (existing.isPresent())"));
+        assertBefore(restore, "requireRegistryDefinitions(existing.get()", "return existing.get();");
     }
 
     @Test
@@ -249,12 +270,6 @@ public class ModdedLifecycleFailureContractTest {
         assertBefore(failure, "rollback.restore(failure);", "throw ");
     }
 
-    private static void assertRepointBeforePublication(String branch) {
-        assertBefore(branch, "repointAndBind(", "new Handle(");
-        assertBefore(branch, "repointAndBind(", "HANDLES.put(");
-        assertBefore(branch, "repointAndBind(", "return ");
-    }
-
     private static void assertBefore(String source, String first, String second) {
         int firstIndex = requiredIndex(source, first);
         int secondIndex = requiredIndex(source, second);

adapters/modded-common/src/test/java/art/arcane/iris/modded/command/ModdedRiverLocateContractTest.java

@@ -0,0 +1,28 @@
+package art.arcane.iris.modded.command;
+
+import org.junit.Test;
+
+import java.io.IOException;
+import java.nio.file.Files;
+import java.nio.file.Path;
+
+import static org.junit.Assert.assertFalse;
+import static org.junit.Assert.assertTrue;
+
+public final class ModdedRiverLocateContractTest {
+    @Test
+    public void riverLookupMergesRecordedAndEligibleActiveFeatures() throws IOException {
+        Path sourcePath = Path.of(System.getProperty("iris.moddedCommonSources"))
+                .resolve("art/arcane/iris/modded/command/ModdedLocateCommands.java");
+        String source = Files.readString(sourcePath);
+        int methodStart = source.indexOf("static int gotoRiver(");
+        int methodEnd = source.indexOf("static int gotoStructure(", methodStart);
+        String method = source.substring(methodStart, methodEnd);
+
+        assertTrue(method.contains("GenerationSemanticQueries.nearestRiver("));
+        assertTrue(method.contains("runtime == null"));
+        assertTrue(method.contains("feature.y() + 2"));
+        assertFalse(method.contains("runtime.nearestFeature("));
+        assertFalse(method.contains("feature.y() + engine.getDimension().getMinHeight()"));
+    }
+}

adapters/modded-common/src/test/java/art/arcane/iris/modded/command/ModdedStructureHistoryContractTest.java

@@ -0,0 +1,34 @@
+package art.arcane.iris.modded.command;
+
+import org.junit.Test;
+
+import java.io.IOException;
+import java.nio.file.Files;
+import java.nio.file.Path;
+
+import static org.junit.Assert.assertFalse;
+import static org.junit.Assert.assertTrue;
+
+public final class ModdedStructureHistoryContractTest {
+    @Test
+    public void retainedStructureNamesReachTheSemanticSearchOnBothAdmissionBranches() throws IOException {
+        Path root = Path.of(System.getProperty("iris.moddedCommonSources"));
+        String source = Files.readString(root.resolve("art/arcane/iris/modded/command/ModdedLocateCommands.java"));
+        int start = source.indexOf("static int gotoStructure(");
+        int end = source.indexOf("static String registeredStructureUnavailableMessage(", start);
+        String admission = source.substring(start, end);
+        String retainedCheck = "GenerationFindCatalog.hasRetainedStructurePlacement(engine, key)";
+        int firstCheck = admission.indexOf(retainedCheck);
+        assertTrue(firstCheck >= 0);
+        assertTrue(admission.indexOf(retainedCheck, firstCheck + retainedCheck.length()) >= 0);
+
+        int locateStart = source.indexOf("private static void locateIrisStructure(");
+        int locateEnd = source.indexOf("private static void runNativeStructureLocate(", locateStart);
+        String locate = source.substring(locateStart, locateEnd);
+        assertTrue(locate.contains("GenerationSemanticQueries.nearestStructure("));
+        assertFalse(locate.contains("IrisStructureLocator.locate("));
+
+        String suggestions = Files.readString(root.resolve("art/arcane/iris/modded/command/ModdedCommandSuggestions.java"));
+        assertTrue(suggestions.contains("GenerationFindCatalog.retainedStructureKeys(engine)"));
+    }
+}

adapters/modded-common/src/test/java/art/arcane/iris/modded/command/ModdedStudioTeleportContractTest.java

@@ -21,8 +21,8 @@ public class ModdedStudioTeleportContractTest {
         assertTrue(open.contains("TRANSITIONS.submit("));
         assertFalse(open.contains("orTimeout("));
         assertFalse(open.contains("deadlineNanos"));
-        assertBefore(execute, "replaceExistingStudio(", "ModdedDimensionManager.create(");
-        assertBefore(execute, "ModdedDimensionManager.create(", "ModdedDimensionManager.teleportAsync(");
+        assertBefore(execute, "replaceExistingStudio(", "ModdedDimensionManager.createTransientStudio(");
+        assertBefore(execute, "ModdedDimensionManager.createTransientStudio(", "ModdedDimensionManager.teleportAsync(");
         assertFalse(execute.contains("deadlineNanos"));
         assertFalse(source.contains("player.teleportTo(studio"));
     }

adapters/modded-common/src/test/java/art/arcane/iris/nativegen/NativeStructureReferenceRepairTest.java

@@ -8,6 +8,7 @@ import art.arcane.iris.engine.framework.NativeStructureOwnershipBundle;
 import art.arcane.iris.engine.framework.NativeStructureOwnershipRecord;
 import art.arcane.iris.engine.framework.NativeStructureOwnershipStore;
 import art.arcane.iris.engine.framework.NativeStructureStartPlan;
+import art.arcane.iris.engine.history.GenerationHistoryRuntimeRouter;
 import art.arcane.iris.engine.object.IrisDimension;
 import art.arcane.iris.engine.object.IrisNativeStructure;
 import art.arcane.iris.engine.object.IrisNativeStructureDecision;
@@ -429,6 +430,14 @@ public class NativeStructureReferenceRepairTest {
             return data;
         }
 
+        @Override
+        public GenerationHistoryRuntimeRouter.CoordinateScope openGenerationHistoryCoordinateScope(
+                int blockX,
+                int blockZ
+        ) {
+            return null;
+        }
+
         @Override
         public boolean isClosing() {
             return false;

adapters/neoforge/build.gradle

@@ -26,6 +26,8 @@ plugins {
     alias(libs.plugins.shadow)
 }
 
+apply from: file('../../gradle/modded-generation-kernel-seals.gradle')
+
 Properties rootProperties = new Properties()
 file('../../gradle.properties').withInputStream { InputStream stream -> rootProperties.load(stream) }
 String irisVersion = providers.gradleProperty('irisVersion').getOrElse(rootProperties.getProperty('irisVersion', '4.1.0-26.2'))
@@ -132,6 +134,7 @@ dependencies {
         "art.arcane:core:${irisVersion}".toString(),
         "art.arcane:spi:${irisVersion}".toString(),
         libs.paralithic,
+        libs.asm,
         libs.lru,
         libs.caffeine,
         libs.dom4j,

build.gradle

@@ -426,6 +426,8 @@ tasks.named('neoforgeJar').configure {
 }
 
 List<String> commonModdedArtifactEntries = [
+    'META-INF/iris/generation-kernels/catalog.tsv',
+    'META-INF/iris/generation-kernels/abi-1.seal',
     'art/arcane/iris/engine/IrisEngine.class',
     'art/arcane/iris/spi/IrisPlatform.class',
     'art/arcane/volmlib/util/mantle/io/Lz4IOWorkerCodecSupport.class',
@@ -530,6 +532,8 @@ tasks.register('verifyModdedArtifacts') {
 // the two plugin descriptors and the slimjar manifests. Nothing in the reference graph points at
 // them, so a shadowJar exclude that drops one is silent until a server hits that path.
 List<String> requiredBukkitArtifactEntries = [
+    'META-INF/iris/generation-kernels/catalog.tsv',
+    'META-INF/iris/generation-kernels/abi-1.seal',
     'plugin.yml',
     'paper-plugin.yml',
     'slimjar.dat',

buildSrc/build.gradle

@@ -21,6 +21,7 @@ repositories {
 dependencies {
     implementation(gradleApi())
     implementation('org.ow2.asm:asm:9.10.1')
+    implementation('org.apache.commons:commons-compress:1.28.0')
     implementation('com.github.VolmitSoftware:NMSTools:c88961416f')
     implementation('io.papermc.paperweight:paperweight-userdev:2.0.0-beta.21')
     testImplementation('junit:junit:4.13.2')

buildSrc/src/main/java/JarCompactor.java

@@ -1,18 +1,22 @@
+import org.apache.commons.compress.archivers.zip.ExtraFieldUtils;
+import org.apache.commons.compress.archivers.zip.Zip64Mode;
+import org.apache.commons.compress.archivers.zip.ZipArchiveEntry;
+import org.apache.commons.compress.archivers.zip.ZipArchiveOutputStream;
 import org.gradle.api.GradleException;
 
-import java.io.BufferedInputStream;
-import java.io.BufferedOutputStream;
 import java.io.File;
 import java.io.IOException;
 import java.io.InputStream;
-import java.io.OutputStream;
 import java.nio.file.AtomicMoveNotSupportedException;
 import java.nio.file.Files;
 import java.nio.file.Path;
 import java.nio.file.StandardCopyOption;
+import java.util.Enumeration;
+import java.util.HashSet;
+import java.util.Set;
+import java.util.zip.CRC32;
 import java.util.zip.ZipEntry;
-import java.util.zip.ZipInputStream;
-import java.util.zip.ZipOutputStream;
+import java.util.zip.ZipFile;
 
 public final class JarCompactor {
     private static final int BUFFER_BYTES = 64 * 1024;
@@ -45,31 +49,50 @@ public final class JarCompactor {
 
     private static void rewrite(Path source, Path destination) throws IOException {
         byte[] buffer = new byte[BUFFER_BYTES];
-        try (InputStream rawInput = new BufferedInputStream(Files.newInputStream(source));
-             ZipInputStream input = new ZipInputStream(rawInput);
-             OutputStream rawOutput = new BufferedOutputStream(Files.newOutputStream(destination));
-             ZipOutputStream output = new ZipOutputStream(rawOutput)) {
+        try (ZipFile input = new ZipFile(source.toFile());
+             ZipArchiveOutputStream output = new ZipArchiveOutputStream(destination)) {
+            if (!output.isSeekable()) {
+                throw new IOException("Jar compaction requires seekable output.");
+            }
             output.setLevel(9);
-            ZipEntry entry;
-            while ((entry = input.getNextEntry()) != null) {
+            output.setUseZip64(Zip64Mode.Never);
+            output.setCreateUnicodeExtraFields(ZipArchiveOutputStream.UnicodeExtraFieldPolicy.NEVER);
+            Set<String> names = new HashSet<>();
+            Enumeration<? extends ZipEntry> entries = input.entries();
+            while (entries.hasMoreElements()) {
+                ZipEntry entry = entries.nextElement();
                 if (entry.isDirectory()) {
                     continue;
                 }
-                ZipEntry compacted = copyMetadata(entry);
-                output.putNextEntry(compacted);
-                int read;
-                while ((read = input.read(buffer)) >= 0) {
-                    if (read > 0) {
-                        output.write(buffer, 0, read);
-                    }
+                if (!names.add(entry.getName())) {
+                    throw new IOException("Duplicate jar entry: " + entry.getName());
                 }
-                output.closeEntry();
+                output.putArchiveEntry(copyMetadata(entry));
+                copyEntry(input, output, entry, buffer);
+                output.closeArchiveEntry();
             }
         }
     }
 
-    private static ZipEntry copyMetadata(ZipEntry source) {
-        ZipEntry target = new ZipEntry(source.getName());
+    private static void copyEntry(ZipFile input, ZipArchiveOutputStream output, ZipEntry entry, byte[] buffer)
+            throws IOException {
+        CRC32 crc = new CRC32();
+        long size = 0L;
+        try (InputStream content = input.getInputStream(entry)) {
+            int read;
+            while ((read = content.read(buffer)) != -1) {
+                output.write(buffer, 0, read);
+                crc.update(buffer, 0, read);
+                size += read;
+            }
+        }
+        if (size != entry.getSize() || crc.getValue() != entry.getCrc()) {
+            throw new IOException("Jar entry failed size or CRC verification: " + entry.getName());
+        }
+    }
+
+    private static ZipArchiveEntry copyMetadata(ZipEntry source) throws IOException {
+        ZipArchiveEntry target = new ZipArchiveEntry(source.getName());
         target.setMethod(ZipEntry.DEFLATED);
         if (source.getTime() >= 0L) {
             target.setTime(source.getTime());
@@ -78,7 +101,8 @@ public final class JarCompactor {
             target.setComment(source.getComment());
         }
         if (source.getExtra() != null) {
-            target.setExtra(source.getExtra());
+            target.setExtraFields(ExtraFieldUtils.parse(source.getExtra(), true,
+                    ZipArchiveEntry.ExtraFieldParsingMode.BEST_EFFORT));
         }
         return target;
     }

buildSrc/src/main/java/art/arcane/iris/buildtools/GenerationKernelSeal.java

@@ -0,0 +1,463 @@
+package art.arcane.iris.buildtools;
+
+import java.io.IOException;
+import java.io.InputStream;
+import java.nio.charset.StandardCharsets;
+import java.nio.file.Files;
+import java.nio.file.LinkOption;
+import java.nio.file.Path;
+import java.nio.file.StandardOpenOption;
+import java.security.MessageDigest;
+import java.security.NoSuchAlgorithmException;
+import java.util.ArrayList;
+import java.util.Collection;
+import java.util.HexFormat;
+import java.util.List;
+import java.util.Map;
+import java.util.Objects;
+import java.util.TreeMap;
+import java.util.TreeSet;
+import java.util.regex.Pattern;
+import java.util.jar.Attributes;
+import java.util.jar.Manifest;
+import java.util.stream.Stream;
+import java.util.zip.ZipEntry;
+import java.util.zip.ZipFile;
+
+public final class GenerationKernelSeal {
+    public static final String FORMAT = "iris-generation-kernel-seal-v1";
+    private static final Pattern HASH = Pattern.compile("[0-9a-f]{64}");
+    private static final long MAXIMUM_SEAL_BYTES = 8L * 1024L * 1024L;
+    private static final int MAXIMUM_ENTRIES = 30_000;
+
+    private GenerationKernelSeal() {
+    }
+
+    public static void main(String[] arguments) throws IOException {
+        if (arguments.length < 4 || arguments.length % 2 != 0 || !arguments[0].equals("verify-dependencies")) {
+            throw new IllegalArgumentException("Expected verify-dependencies <seal> <identity> <artifact> pairs.");
+        }
+        Map<String, Path> dependencies = new TreeMap<>();
+        for (int index = 2; index < arguments.length; index += 2) {
+            if (dependencies.putIfAbsent(arguments[index], Path.of(arguments[index + 1])) != null) {
+                throw new IllegalArgumentException("Duplicate resolved generation dependency.");
+            }
+        }
+        verifyDependencySubset(Path.of(arguments[1]), dependencies);
+    }
+
+    public static void verifyDependencySubset(Path seal, Map<String, Path> dependencies) throws IOException {
+        SourceManifest expected = read(seal);
+        for (Map.Entry<String, String> dependency : dependencyHashes(dependencies).entrySet()) {
+            if (!Objects.equals(expected.dependencies().get(dependency.getKey()), dependency.getValue())) {
+                throw new IOException("Resolved platform dependency does not match generation ABI " + expected.abi()
+                        + ": " + dependency.getKey());
+            }
+        }
+    }
+
+    public static void verifyCatalog(Path catalog, Map<Integer, SourceManifest> manifests) throws IOException {
+        if (!Files.isRegularFile(catalog) || Files.size(catalog) > 16 * 1024) {
+            throw new IOException("Missing or oversized generation kernel catalog.");
+        }
+        String source = Files.readString(catalog, StandardCharsets.UTF_8);
+        String[] lines = source.split("\n", -1);
+        if (!source.endsWith("\n") || source.indexOf('\r') >= 0 || lines.length < 4 || lines.length > 128
+                || !lines[0].equals("iris-generation-kernel-catalog-v1")) {
+            throw new IOException("Invalid generation kernel catalog.");
+        }
+        try {
+            String[] current = lines[1].split("\t", -1);
+            if (current.length != 4 || !current[0].equals("current")) {
+                throw new IllegalArgumentException("Missing current generation version.");
+            }
+            int currentAbi = positive(current[1]);
+            AlgorithmVersion algorithms = new AlgorithmVersion(positive(current[2]), positive(current[3]));
+            SourceManifest selected = manifests.get(currentAbi);
+            if (selected == null || !selected.algorithms().contains(algorithms)) {
+                throw new IllegalArgumentException("Current generation version has no matching sealed factory.");
+            }
+            TreeSet<Integer> registered = new TreeSet<>();
+            int previous = 0;
+            for (int index = 2; index < lines.length - 1; index++) {
+                String[] kernel = lines[index].split("\t", -1);
+                if (kernel.length != 2 || !kernel[0].equals("kernel")) {
+                    throw new IllegalArgumentException("Invalid kernel registration.");
+                }
+                int abi = positive(kernel[1]);
+                if (abi <= previous) {
+                    throw new IllegalArgumentException("Kernel registrations must be unique and sorted.");
+                }
+                previous = abi;
+                registered.add(abi);
+            }
+            if (!registered.equals(manifests.keySet())) {
+                throw new IllegalArgumentException("Kernel catalog must register exactly the retained sealed kernels.");
+            }
+        } catch (IllegalArgumentException failure) {
+            throw new IOException("Invalid generation kernel catalog.", failure);
+        }
+    }
+
+    private static int positive(String value) {
+        if (!value.matches("[1-9][0-9]{0,8}")) {
+            throw new IllegalArgumentException("Invalid generation version.");
+        }
+        return Integer.parseInt(value);
+    }
+
+    public static SourceManifest capture(CaptureOptions options, Map<String, Path> dependencies) throws IOException {
+        CaptureOptions required = Objects.requireNonNull(options, "options");
+        Map<String, String> sourceHashes = sources(required.repository(), required.roots(), required.exclusions());
+        if (sourceHashes.isEmpty()) {
+            throw new IOException("Generation kernel source scope is empty.");
+        }
+        return new SourceManifest(required.abi(), required.factoryClass(), required.algorithms(), required.roots(), required.exclusions(),
+                sourceHashes, dependencyHashes(dependencies));
+    }
+
+    public static void verify(Path repository, Path seal, Map<String, Path> dependencies) throws IOException {
+        SourceManifest expected = read(seal);
+        SourceManifest actual = capture(new CaptureOptions(repository, expected.abi(), expected.factoryClass(), expected.algorithms(),
+                expected.roots(), expected.exclusions()), dependencies);
+        List<String> failures = new ArrayList<>();
+        differences("source", expected.sources(), actual.sources(), failures);
+        differences("dependency", expected.dependencies(), actual.dependencies(), failures);
+        if (!failures.isEmpty()) {
+            throw new IOException("Generation ABI " + expected.abi() + " no longer matches its sealed implementation:\n"
+                    + String.join("\n", failures)
+                    + "\nRetain this kernel's implementation and add a separately versioned kernel for changed generation.");
+        }
+    }
+
+    public static void writeNew(Path destination, SourceManifest manifest) throws IOException {
+        Files.createDirectories(destination.toAbsolutePath().getParent());
+        Files.writeString(destination, encode(manifest), StandardCharsets.UTF_8,
+                StandardOpenOption.CREATE_NEW, StandardOpenOption.WRITE);
+    }
+
+    public static SourceManifest read(Path path) throws IOException {
+        if (!Files.isRegularFile(path, LinkOption.NOFOLLOW_LINKS) || Files.size(path) > MAXIMUM_SEAL_BYTES) {
+            throw new IOException("Missing or oversized generation kernel seal: " + path);
+        }
+        List<String> lines = Files.readAllLines(path, StandardCharsets.UTF_8);
+        if (lines.size() < 4 || !FORMAT.equals(lines.getFirst()) || lines.size() > MAXIMUM_ENTRIES) {
+            throw new IOException("Invalid generation kernel seal: " + path);
+        }
+        int abi = 0;
+        String factory = null;
+        List<String> roots = new ArrayList<>();
+        List<AlgorithmVersion> algorithms = new ArrayList<>();
+        List<String> exclusions = new ArrayList<>();
+        Map<String, String> sources = new TreeMap<>();
+        Map<String, String> dependencies = new TreeMap<>();
+        try {
+            for (int index = 1; index < lines.size(); index++) {
+                String[] entry = lines.get(index).split("\t", -1);
+                if (entry.length < 2 || entry.length > 3) {
+                    throw new IllegalArgumentException("Invalid seal entry.");
+                }
+                switch (entry[0]) {
+                    case "abi" -> {
+                        if (abi != 0 || entry.length != 2) {
+                            throw new IllegalArgumentException("Duplicate or invalid ABI.");
+                        }
+                        abi = Integer.parseInt(entry[1]);
+                    }
+                    case "factory" -> {
+                        if (factory != null || entry.length != 2) {
+                            throw new IllegalArgumentException("Duplicate or invalid factory.");
+                        }
+                        factory = entry[1];
+                    }
+                    case "scope" -> addPath(roots, entry);
+                    case "algorithm" -> {
+                        if (entry.length != 3) {
+                            throw new IllegalArgumentException("Invalid algorithm version.");
+                        }
+                        algorithms.add(new AlgorithmVersion(Integer.parseInt(entry[1]), Integer.parseInt(entry[2])));
+                    }
+                    case "exclude" -> addPath(exclusions, entry);
+                    case "source" -> addHash(sources, entry, true);
+                    case "dependency" -> addHash(dependencies, entry, false);
+                    default -> throw new IllegalArgumentException("Unknown generation kernel seal entry.");
+                }
+            }
+            SourceManifest manifest = new SourceManifest(abi, factory, algorithms, roots, exclusions, sources, dependencies);
+            if (!Files.readString(path, StandardCharsets.UTF_8).equals(encode(manifest))) {
+                throw new IllegalArgumentException("Generation kernel seal is not canonical.");
+            }
+            return manifest;
+        } catch (RuntimeException failure) {
+            throw new IOException("Invalid generation kernel seal: " + path, failure);
+        }
+    }
+
+    public static String fingerprint(SourceManifest manifest) {
+        return hash(encode(manifest).getBytes(StandardCharsets.UTF_8));
+    }
+
+    public static String encode(SourceManifest manifest) {
+        StringBuilder text = new StringBuilder(FORMAT).append('\n');
+        text.append("abi\t").append(manifest.abi()).append('\n');
+        text.append("factory\t").append(manifest.factoryClass()).append('\n');
+        for (AlgorithmVersion algorithm : manifest.algorithms()) {
+            text.append("algorithm\t").append(algorithm.rng()).append('\t').append(algorithm.seed()).append('\n');
+        }
+        for (String scope : manifest.roots()) {
+            text.append("scope\t").append(scope).append('\n');
+        }
+        for (String exclusion : manifest.exclusions()) {
+            text.append("exclude\t").append(exclusion).append('\n');
+        }
+        appendHashes(text, "source", manifest.sources());
+        appendHashes(text, "dependency", manifest.dependencies());
+        return text.toString();
+    }
+
+    public static String artifactHash(Path artifact) throws IOException {
+        if (!Files.isRegularFile(artifact)) {
+            throw new IOException("Missing generation dependency artifact: " + artifact);
+        }
+        MessageDigest digest = digest();
+        try (ZipFile zip = new ZipFile(artifact.toFile())) {
+            hashRuntimeManifest(zip, digest);
+            Map<String, ZipEntry> entries = new TreeMap<>();
+            for (ZipEntry entry : zip.stream().toList()) {
+                String name = entry.getName();
+                if (entry.isDirectory() || metadata(name)) {
+                    continue;
+                }
+                if (entries.putIfAbsent(name, entry) != null) {
+                    throw new IOException("Duplicate dependency artifact entry: " + name);
+                }
+            }
+            for (Map.Entry<String, ZipEntry> entry : entries.entrySet()) {
+                update(digest, entry.getKey());
+                try (InputStream input = zip.getInputStream(entry.getValue())) {
+                    MessageDigest content = digest();
+                    byte[] buffer = new byte[16 * 1024];
+                    int read;
+                    while ((read = input.read(buffer)) != -1) {
+                        content.update(buffer, 0, read);
+                    }
+                    update(digest, HexFormat.of().formatHex(content.digest()));
+                }
+            }
+        }
+        return HexFormat.of().formatHex(digest.digest());
+    }
+
+    private static void hashRuntimeManifest(ZipFile zip, MessageDigest digest) throws IOException {
+        ZipEntry entry = zip.getEntry("META-INF/MANIFEST.MF");
+        if (entry == null) {
+            return;
+        }
+        Manifest manifest;
+        try (InputStream input = zip.getInputStream(entry)) {
+            manifest = new Manifest(input);
+        }
+        List<String> runtimeAttributes = List.of("Multi-Release", "Automatic-Module-Name", "Class-Path", "Sealed",
+                "Agent-Class", "Premain-Class", "Launcher-Agent-Class", "Boot-Class-Path",
+                "Can-Redefine-Classes", "Can-Retransform-Classes", "Can-Set-Native-Method-Prefix");
+        for (String name : runtimeAttributes) {
+            String value = manifest.getMainAttributes().getValue(name);
+            if (value != null) {
+                update(digest, "manifest/" + name);
+                update(digest, value);
+            }
+        }
+        for (Map.Entry<String, Attributes> section : new TreeMap<>(manifest.getEntries()).entrySet()) {
+            String sealed = section.getValue().getValue("Sealed");
+            if (sealed != null) {
+                update(digest, "manifest/section/" + section.getKey());
+                update(digest, sealed);
+            }
+        }
+    }
+
+    private static Map<String, String> sources(Path repository, List<String> roots, List<String> exclusions)
+            throws IOException {
+        Path base = repository.toAbsolutePath().normalize();
+        Map<String, String> hashes = new TreeMap<>();
+        for (String root : roots) {
+            Path sourceRoot = base.resolve(root).normalize();
+            if (!sourceRoot.startsWith(base) || !Files.exists(sourceRoot, LinkOption.NOFOLLOW_LINKS)) {
+                throw new IOException("Missing generation source scope: " + root);
+            }
+            try (Stream<Path> walk = Files.walk(sourceRoot)) {
+                for (Path source : walk.toList()) {
+                    String relative = base.relativize(source).toString().replace('\\', '/');
+                    if (excluded(relative, exclusions)) {
+                        continue;
+                    }
+                    if (Files.isSymbolicLink(source)) {
+                        throw new IOException("Generation source must not be a symbolic link: " + relative);
+                    }
+                    if (Files.isRegularFile(source) && (source.equals(sourceRoot)
+                            || source.getFileName().toString().endsWith(".java"))) {
+                        String content = Files.readString(source, StandardCharsets.UTF_8).replace("\r\n", "\n");
+                        hashes.put(relative, hash(content.getBytes(StandardCharsets.UTF_8)));
+                    }
+                }
+            }
+        }
+        return hashes;
+    }
+
+    private static Map<String, String> dependencyHashes(Map<String, Path> dependencies) throws IOException {
+        Map<String, String> hashes = new TreeMap<>();
+        for (Map.Entry<String, Path> dependency : Objects.requireNonNull(dependencies, "dependencies").entrySet()) {
+            String key = token(dependency.getKey());
+            hashes.put(key, artifactHash(dependency.getValue()));
+        }
+        if (hashes.isEmpty()) {
+            throw new IOException("Generation kernel dependency scope is empty.");
+        }
+        return hashes;
+    }
+
+    private static void differences(String type, Map<String, String> expected, Map<String, String> actual,
+                                    List<String> failures) {
+        TreeSet<String> keys = new TreeSet<>(expected.keySet());
+        keys.addAll(actual.keySet());
+        for (String key : keys) {
+            if (!Objects.equals(expected.get(key), actual.get(key))) {
+                String change = !expected.containsKey(key) ? "added" : !actual.containsKey(key) ? "deleted" : "changed";
+                failures.add(type + " " + change + ": " + key);
+            }
+        }
+    }
+
+    private static boolean excluded(String path, List<String> exclusions) {
+        for (String exclusion : exclusions) {
+            if (path.equals(exclusion) || path.startsWith(exclusion + "/")) {
+                return true;
+            }
+        }
+        return false;
+    }
+
+    private static boolean metadata(String name) {
+        return name.equals("META-INF/MANIFEST.MF") || name.startsWith("META-INF/maven/")
+                || name.startsWith("META-INF/") && (name.endsWith(".SF") || name.endsWith(".RSA") || name.endsWith(".DSA"));
+    }
+
+    private static void addPath(List<String> paths, String[] entry) {
+        if (entry.length != 2 || paths.contains(entry[1])) {
+            throw new IllegalArgumentException("Duplicate or invalid source scope.");
+        }
+        paths.add(relative(entry[1]));
+    }
+
+    private static void addHash(Map<String, String> hashes, String[] entry, boolean path) {
+        if (entry.length != 3 || !HASH.matcher(entry[2]).matches()) {
+            throw new IllegalArgumentException("Invalid sealed hash.");
+        }
+        String key = path ? relative(entry[1]) : token(entry[1]);
+        if (hashes.putIfAbsent(key, entry[2]) != null) {
+            throw new IllegalArgumentException("Duplicate sealed entry.");
+        }
+    }
+
+    private static void appendHashes(StringBuilder text, String type, Map<String, String> hashes) {
+        for (Map.Entry<String, String> entry : new TreeMap<>(hashes).entrySet()) {
+            text.append(type).append('\t').append(entry.getKey()).append('\t').append(entry.getValue()).append('\n');
+        }
+    }
+
+    private static String relative(String value) {
+        String path = token(value);
+        if (path.startsWith("/") || path.contains("\\") || path.contains(":")
+                || !Path.of(path).normalize().toString().replace('\\', '/').equals(path)
+                || path.equals("..") || path.startsWith("../")) {
+            throw new IllegalArgumentException("Invalid generation source path: " + path);
+        }
+        return path;
+    }
+
+    private static String token(String value) {
+        String required = Objects.requireNonNull(value, "seal token");
+        if (required.isBlank() || required.chars().anyMatch(Character::isWhitespace)) {
+            throw new IllegalArgumentException("Invalid generation seal token.");
+        }
+        return required;
+    }
+
+    private static List<String> paths(Collection<String> values) {
+        TreeSet<String> sorted = new TreeSet<>();
+        for (String value : values) {
+            if (!sorted.add(relative(value))) {
+                throw new IllegalArgumentException("Duplicate generation source scope.");
+            }
+        }
+        return List.copyOf(sorted);
+    }
+
+    private static String hash(byte[] bytes) {
+        return HexFormat.of().formatHex(digest().digest(bytes));
+    }
+
+    private static MessageDigest digest() {
+        try {
+            return MessageDigest.getInstance("SHA-256");
+        } catch (NoSuchAlgorithmException failure) {
+            throw new IllegalStateException(failure);
+        }
+    }
+
+    private static void update(MessageDigest digest, String value) {
+        digest.update(value.getBytes(StandardCharsets.UTF_8));
+        digest.update((byte) '\n');
+    }
+
+    public record CaptureOptions(Path repository, int abi, String factoryClass, List<AlgorithmVersion> algorithms, List<String> roots,
+                                 List<String> exclusions) {
+        public CaptureOptions {
+            Objects.requireNonNull(repository, "repository");
+            if (abi < 1) {
+                throw new IllegalArgumentException("Generation ABI must be positive.");
+            }
+            factoryClass = token(factoryClass);
+            TreeSet<AlgorithmVersion> sortedAlgorithms = new TreeSet<>(algorithms);
+            if (sortedAlgorithms.isEmpty() || sortedAlgorithms.size() != algorithms.size()) {
+                throw new IllegalArgumentException("Generation algorithm versions must be nonempty and unique.");
+            }
+            algorithms = List.copyOf(sortedAlgorithms);
+            roots = paths(roots);
+            exclusions = paths(exclusions);
+            if (roots.isEmpty()) {
+                throw new IllegalArgumentException("Generation source scope must not be empty.");
+            }
+        }
+    }
+
+    public record SourceManifest(int abi, String factoryClass, List<AlgorithmVersion> algorithms, List<String> roots, List<String> exclusions,
+                           Map<String, String> sources, Map<String, String> dependencies) {
+        public SourceManifest {
+            CaptureOptions options = new CaptureOptions(Path.of("."), abi, factoryClass, algorithms, roots, exclusions);
+            algorithms = options.algorithms();
+            roots = options.roots();
+            exclusions = options.exclusions();
+            sources = Map.copyOf(sources);
+            dependencies = Map.copyOf(dependencies);
+            if (sources.isEmpty() || dependencies.isEmpty() || sources.size() + dependencies.size() > MAXIMUM_ENTRIES) {
+                throw new IllegalArgumentException("Invalid generation kernel seal entry count.");
+            }
+        }
+    }
+
+    public record AlgorithmVersion(int rng, int seed) implements Comparable<AlgorithmVersion> {
+        public AlgorithmVersion {
+            if (rng < 1 || seed < 1) {
+                throw new IllegalArgumentException("Generation algorithm versions must be positive.");
+            }
+        }
+
+        @Override
+        public int compareTo(AlgorithmVersion other) {
+            int byRng = Integer.compare(rng, other.rng);
+            return byRng == 0 ? Integer.compare(seed, other.seed) : byRng;
+        }
+    }
+}

buildSrc/src/test/java/GenerationKernelSealTest.java

@@ -0,0 +1,192 @@
+import art.arcane.iris.buildtools.GenerationKernelSeal;
+import org.junit.Rule;
+import org.junit.Test;
+import org.junit.rules.TemporaryFolder;
+
+import java.io.IOException;
+import java.nio.charset.StandardCharsets;
+import java.nio.file.Files;
+import java.nio.file.Path;
+import java.util.List;
+import java.util.Map;
+import java.util.zip.ZipEntry;
+import java.util.zip.ZipOutputStream;
+
+import static org.junit.Assert.assertEquals;
+import static org.junit.Assert.assertNotEquals;
+import static org.junit.Assert.assertThrows;
+import static org.junit.Assert.assertTrue;
+
+public class GenerationKernelSealTest {
+    @Rule
+    public final TemporaryFolder temporary = new TemporaryFolder();
+
+    @Test
+    public void verifiesUnchangedSourceAndCanonicalDependencyContents() throws Exception {
+        Fixture fixture = fixture();
+        GenerationKernelSeal.verify(fixture.root(), fixture.seal(), fixture.dependencies());
+        String original = GenerationKernelSeal.artifactHash(fixture.dependency());
+        artifact(fixture.dependency(), "same code", "another version", 1_700_000_000_000L);
+        assertEquals(original, GenerationKernelSeal.artifactHash(fixture.dependency()));
+        GenerationKernelSeal.verify(fixture.root(), fixture.seal(), fixture.dependencies());
+        assertEquals(GenerationKernelSeal.fingerprint(GenerationKernelSeal.read(fixture.seal())),
+                GenerationKernelSeal.fingerprint(GenerationKernelSeal.capture(fixture.options(), fixture.dependencies())));
+    }
+
+    @Test
+    public void rejectsChangedAddedAndDeletedGenerationSources() throws Exception {
+        Fixture fixture = fixture();
+        Path source = fixture.root().resolve("generation/Noise.java");
+        Files.writeString(source, "class Noise { int value = 2; }");
+        assertTrue(assertThrows(IOException.class,
+                () -> GenerationKernelSeal.verify(fixture.root(), fixture.seal(), fixture.dependencies()))
+                .getMessage().contains("source changed"));
+        Files.writeString(source, "class Noise { int value = 1; }");
+        Path added = fixture.root().resolve("generation/Added.java");
+        Files.writeString(added, "class Added {}");
+        assertTrue(assertThrows(IOException.class,
+                () -> GenerationKernelSeal.verify(fixture.root(), fixture.seal(), fixture.dependencies()))
+                .getMessage().contains("source added"));
+        Files.delete(added);
+        Files.delete(source);
+        assertThrows(IOException.class,
+                () -> GenerationKernelSeal.verify(fixture.root(), fixture.seal(), fixture.dependencies()));
+    }
+
+    @Test
+    public void rejectsChangedAddedAndDeletedDependencies() throws Exception {
+        Fixture fixture = fixture();
+        String original = GenerationKernelSeal.artifactHash(fixture.dependency());
+        artifact(fixture.dependency(), "changed code", "same version", 0L);
+        assertNotEquals(original, GenerationKernelSeal.artifactHash(fixture.dependency()));
+        assertTrue(assertThrows(IOException.class,
+                () -> GenerationKernelSeal.verify(fixture.root(), fixture.seal(), fixture.dependencies()))
+                .getMessage().contains("dependency changed"));
+        artifact(fixture.dependency(), "same code", "same version", 0L);
+        assertThrows(IOException.class, () -> GenerationKernelSeal.verify(fixture.root(), fixture.seal(),
+                Map.of("math", fixture.dependency(), "new-math", fixture.dependency())));
+        assertThrows(IOException.class,
+                () -> GenerationKernelSeal.verify(fixture.root(), fixture.seal(), Map.of()));
+    }
+
+    @Test
+    public void rejectsMultiReleaseManifestChanges() throws Exception {
+        Fixture fixture = fixture();
+        String original = GenerationKernelSeal.artifactHash(fixture.dependency());
+        artifact(fixture.dependency(), "same code", "same version\r\nMulti-Release: true", 0L);
+        assertNotEquals(original, GenerationKernelSeal.artifactHash(fixture.dependency()));
+        assertThrows(IOException.class,
+                () -> GenerationKernelSeal.verify(fixture.root(), fixture.seal(), fixture.dependencies()));
+    }
+
+    @Test
+    public void rejectsAgentEntrypointAndCapabilityChanges() throws Exception {
+        Fixture fixture = fixture();
+        String original = GenerationKernelSeal.artifactHash(fixture.dependency());
+        for (String attribute : List.of("Agent-Class", "Premain-Class", "Launcher-Agent-Class", "Boot-Class-Path",
+                "Can-Redefine-Classes", "Can-Retransform-Classes", "Can-Set-Native-Method-Prefix")) {
+            artifact(fixture.dependency(), "same code", "same version\r\n" + attribute + ": changed", 0L);
+            assertNotEquals(attribute, original, GenerationKernelSeal.artifactHash(fixture.dependency()));
+            assertThrows(IOException.class,
+                    () -> GenerationKernelSeal.verify(fixture.root(), fixture.seal(), fixture.dependencies()));
+        }
+    }
+
+    @Test
+    public void sealsExplicitAgentBuildInputsAndExecutableSources() throws Exception {
+        Fixture fixture = fixture();
+        Path agentSource = fixture.root().resolve("agent/src/main/java/Installer.java");
+        Path agentBuild = fixture.root().resolve("agent/build.gradle");
+        Files.createDirectories(agentSource.getParent());
+        Files.writeString(agentSource, "class Installer {}");
+        Files.writeString(agentBuild, "plugins { id 'java' }");
+        GenerationKernelSeal.CaptureOptions options = new GenerationKernelSeal.CaptureOptions(
+                fixture.root(), 1, "example.KernelV1", List.of(new GenerationKernelSeal.AlgorithmVersion(1, 1)),
+                List.of("generation", "agent/build.gradle", "agent/src/main/java"), List.of("generation/kernels"));
+        Path seal = fixture.root().resolve("agent.seal");
+        GenerationKernelSeal.writeNew(seal, GenerationKernelSeal.capture(options, fixture.dependencies()));
+        GenerationKernelSeal.verify(fixture.root(), seal, fixture.dependencies());
+        Files.writeString(agentBuild, "plugins { id 'application' }");
+        assertThrows(IOException.class,
+                () -> GenerationKernelSeal.verify(fixture.root(), seal, fixture.dependencies()));
+        Files.writeString(agentBuild, "plugins { id 'java' }");
+        Files.writeString(agentSource, "class Installer { boolean defers; }");
+        assertThrows(IOException.class,
+                () -> GenerationKernelSeal.verify(fixture.root(), seal, fixture.dependencies()));
+    }
+
+    @Test
+    public void checksTheActualPlatformDependencySubset() throws Exception {
+        Fixture fixture = fixture();
+        GenerationKernelSeal.verifyDependencySubset(fixture.seal(), fixture.dependencies());
+        assertThrows(IOException.class, () -> GenerationKernelSeal.verifyDependencySubset(fixture.seal(),
+                Map.of("unknown-library", fixture.dependency())));
+        artifact(fixture.dependency(), "platform override", "same version", 0L);
+        assertThrows(IOException.class,
+                () -> GenerationKernelSeal.verifyDependencySubset(fixture.seal(), fixture.dependencies()));
+    }
+
+    @Test
+    public void catalogCannotSelectAnUnsealedAlgorithmTuple() throws Exception {
+        Fixture fixture = fixture();
+        Path catalog = fixture.root().resolve("catalog.tsv");
+        Files.writeString(catalog, "iris-generation-kernel-catalog-v1\ncurrent\t1\t1\t1\nkernel\t1\n");
+        Map<Integer, GenerationKernelSeal.SourceManifest> manifests = Map.of(1, GenerationKernelSeal.read(fixture.seal()));
+        GenerationKernelSeal.verifyCatalog(catalog, manifests);
+        Files.writeString(catalog, "iris-generation-kernel-catalog-v1\ncurrent\t1\t2\t1\nkernel\t1\n");
+        assertThrows(IOException.class, () -> GenerationKernelSeal.verifyCatalog(catalog, manifests));
+        Files.writeString(catalog, "iris-generation-kernel-catalog-v1\ncurrent\t1\t1\t1\nkernel\t1\nkernel\t2\n");
+        assertThrows(IOException.class, () -> GenerationKernelSeal.verifyCatalog(catalog, manifests));
+    }
+
+    @Test
+    public void permitsSeparatelyScopedFutureKernelsWithoutChangingRetainedSeal() throws Exception {
+        Fixture fixture = fixture();
+        Path future = fixture.root().resolve("generation/kernels/v2/NewMath.java");
+        Files.createDirectories(future.getParent());
+        Files.writeString(future, "class NewMath {}");
+        GenerationKernelSeal.verify(fixture.root(), fixture.seal(), fixture.dependencies());
+        GenerationKernelSeal.SourceManifest next = GenerationKernelSeal.capture(new GenerationKernelSeal.CaptureOptions(
+                fixture.root(), 2, "example.KernelV2", List.of(new GenerationKernelSeal.AlgorithmVersion(2, 3)),
+                List.of("generation/kernels/v2"), List.of()), fixture.dependencies());
+        assertNotEquals(GenerationKernelSeal.fingerprint(next),
+                GenerationKernelSeal.fingerprint(GenerationKernelSeal.read(fixture.seal())));
+        assertThrows(IOException.class,
+                () -> GenerationKernelSeal.writeNew(fixture.seal(), next));
+    }
+
+    private Fixture fixture() throws Exception {
+        Path root = temporary.newFolder().toPath();
+        Files.createDirectories(root.resolve("generation"));
+        Files.writeString(root.resolve("generation/Noise.java"), "class Noise { int value = 1; }");
+        Path dependency = root.resolve("math.jar");
+        artifact(dependency, "same code", "same version", 0L);
+        GenerationKernelSeal.CaptureOptions options = new GenerationKernelSeal.CaptureOptions(
+                root, 1, "example.KernelV1", List.of(new GenerationKernelSeal.AlgorithmVersion(1, 1)),
+                List.of("generation"), List.of("generation/kernels"));
+        Path seal = root.resolve("abi-1.seal");
+        Map<String, Path> dependencies = Map.of("math", dependency);
+        GenerationKernelSeal.writeNew(seal, GenerationKernelSeal.capture(options, dependencies));
+        return new Fixture(root, seal, dependency, dependencies, options);
+    }
+
+    private static void artifact(Path path, String content, String version, long timestamp) throws IOException {
+        try (ZipOutputStream output = new ZipOutputStream(Files.newOutputStream(path))) {
+            ZipEntry metadata = new ZipEntry("META-INF/MANIFEST.MF");
+            metadata.setTime(timestamp);
+            output.putNextEntry(metadata);
+            output.write(("Manifest-Version: 1.0\r\nImplementation-Version: " + version + "\r\n\r\n")
+                    .getBytes(StandardCharsets.UTF_8));
+            output.closeEntry();
+            ZipEntry code = new ZipEntry("example/Math.class");
+            code.setTime(timestamp);
+            output.putNextEntry(code);
+            output.write(content.getBytes(StandardCharsets.UTF_8));
+            output.closeEntry();
+        }
+    }
+
+    private record Fixture(Path root, Path seal, Path dependency, Map<String, Path> dependencies,
+                           GenerationKernelSeal.CaptureOptions options) {
+    }
+}

buildSrc/src/test/java/JarCompactorTest.java

@@ -1,16 +1,33 @@
+import org.apache.commons.compress.archivers.zip.ZipArchiveEntry;
+import org.apache.commons.compress.archivers.zip.ZipArchiveOutputStream;
+import org.apache.commons.compress.archivers.zip.ZipFile;
+import org.gradle.api.GradleException;
 import org.junit.Rule;
 import org.junit.Test;
 import org.junit.rules.TemporaryFolder;
 
 import java.io.File;
 import java.io.FileOutputStream;
+import java.io.InputStream;
 import java.nio.charset.StandardCharsets;
+import java.nio.file.Files;
+import java.security.MessageDigest;
+import java.util.Enumeration;
+import java.util.HexFormat;
+import java.util.Map;
+import java.util.TreeMap;
 import java.util.jar.JarEntry;
 import java.util.jar.JarFile;
 import java.util.jar.JarOutputStream;
+import java.util.zip.CRC32;
+import java.util.zip.ZipEntry;
 
 import static org.junit.Assert.assertArrayEquals;
+import static org.junit.Assert.assertEquals;
+import static org.junit.Assert.assertFalse;
 import static org.junit.Assert.assertNull;
+import static org.junit.Assert.assertThrows;
+import static org.junit.Assert.assertTrue;
 
 public class JarCompactorTest {
     @Rule
@@ -36,4 +53,128 @@ public class JarCompactorTest {
                     jar.getJarEntry("example/value.txt")).readAllBytes());
         }
     }
+
+    @Test
+    public void preservesJarIdentityAndProducesDeterministicSeekableOutput() throws Exception {
+        File artifact = temporaryFolder.newFile("identity.jar");
+        try (JarOutputStream output = new JarOutputStream(new FileOutputStream(artifact));
+             InputStream classResource = getClass().getResourceAsStream("/JarCompactorTest.class")) {
+            output.setLevel(9);
+            writeEntry(output, "META-INF/MANIFEST.MF", "Manifest-Version: 1.0\r\nMulti-Release: true\r\n\r\n"
+                    .getBytes(StandardCharsets.UTF_8));
+            writeEntry(output, "JarCompactorTest.class", classResource.readAllBytes());
+            writeEntry(output, "META-INF/iris/generation-kernels/abi-1.seal", "registry fixture".getBytes(StandardCharsets.UTF_8));
+            writeEntry(output, "example/caf\u00e9.txt", "unicode name".getBytes(StandardCharsets.UTF_8));
+            for (int index = 0; index < 100; index++) {
+                writeEntry(output, "example/item-" + index + ".txt", ("value-" + index).getBytes(StandardCharsets.UTF_8));
+            }
+        }
+        Map<String, EntryIdentity> original = identity(artifact);
+        long originalBytes = artifact.length();
+
+        JarCompactor.compact(artifact);
+
+        assertEquals(original, identity(artifact));
+        assertTrue(artifact.length() < originalBytes);
+        try (JarFile jar = new JarFile(artifact)) {
+            assertEquals("true", jar.getManifest().getMainAttributes().getValue("Multi-Release"));
+            assertEquals(0xCA, jar.getInputStream(jar.getJarEntry("JarCompactorTest.class")).read());
+        }
+        try (ZipFile zip = ZipFile.builder().setFile(artifact).get()) {
+            Enumeration<ZipArchiveEntry> entries = zip.getEntries();
+            while (entries.hasMoreElements()) {
+                assertFalse(entries.nextElement().getGeneralPurposeBit().usesDataDescriptor());
+            }
+        }
+        byte[] first = Files.readAllBytes(artifact.toPath());
+        JarCompactor.compact(artifact);
+        assertArrayEquals(first, Files.readAllBytes(artifact.toPath()));
+    }
+
+    @Test
+    public void rejectsMalformedArchivesWithoutReplacingTheSource() throws Exception {
+        File artifact = temporaryFolder.newFile("invalid.jar");
+        byte[] original = "not a zip archive".getBytes(StandardCharsets.UTF_8);
+        Files.write(artifact.toPath(), original);
+
+        assertThrows(GradleException.class, () -> JarCompactor.compact(artifact));
+
+        assertArrayEquals(original, Files.readAllBytes(artifact.toPath()));
+        assertEquals(1, temporaryFolder.getRoot().listFiles().length);
+    }
+
+    @Test
+    public void rejectsCorruptPayloadWithoutReplacingTheSource() throws Exception {
+        File artifact = temporaryFolder.newFile("corrupt.jar");
+        byte[] payload = "checked-payload".getBytes(StandardCharsets.UTF_8);
+        CRC32 crc = new CRC32();
+        crc.update(payload);
+        try (JarOutputStream output = new JarOutputStream(new FileOutputStream(artifact))) {
+            JarEntry entry = new JarEntry("value.txt");
+            entry.setMethod(ZipEntry.STORED);
+            entry.setSize(payload.length);
+            entry.setCrc(crc.getValue());
+            output.putNextEntry(entry);
+            output.write(payload);
+            output.closeEntry();
+        }
+        byte[] corrupt = Files.readAllBytes(artifact.toPath());
+        int payloadOffset = new String(corrupt, StandardCharsets.ISO_8859_1).indexOf("checked-payload");
+        assertTrue(payloadOffset > 0);
+        corrupt[payloadOffset] ^= 1;
+        Files.write(artifact.toPath(), corrupt);
+
+        assertThrows(GradleException.class, () -> JarCompactor.compact(artifact));
+
+        assertArrayEquals(corrupt, Files.readAllBytes(artifact.toPath()));
+    }
+
+    @Test
+    public void rejectsDuplicateEntriesWithoutReplacingTheSource() throws Exception {
+        File artifact = temporaryFolder.newFile("duplicate.jar");
+        try (ZipArchiveOutputStream output = new ZipArchiveOutputStream(artifact)) {
+            for (int index = 0; index < 2; index++) {
+                output.putArchiveEntry(new ZipArchiveEntry("duplicate.txt"));
+                output.write(index);
+                output.closeArchiveEntry();
+            }
+        }
+        byte[] original = Files.readAllBytes(artifact.toPath());
+
+        assertThrows(GradleException.class, () -> JarCompactor.compact(artifact));
+
+        assertArrayEquals(original, Files.readAllBytes(artifact.toPath()));
+    }
+
+    private static void writeEntry(JarOutputStream output, String name, byte[] content) throws Exception {
+        JarEntry entry = new JarEntry(name);
+        entry.setTime(315_532_800_000L);
+        entry.setComment("preserved entry comment");
+        entry.setExtra(new byte[]{(byte) 0xFE, (byte) 0xCA, 1, 0, 7});
+        output.putNextEntry(entry);
+        output.write(content);
+        output.closeEntry();
+    }
+
+    private static Map<String, EntryIdentity> identity(File artifact) throws Exception {
+        Map<String, EntryIdentity> entries = new TreeMap<>();
+        try (JarFile jar = new JarFile(artifact)) {
+            Enumeration<JarEntry> contents = jar.entries();
+            while (contents.hasMoreElements()) {
+                JarEntry entry = contents.nextElement();
+                byte[] bytes;
+                try (InputStream input = jar.getInputStream(entry)) {
+                    bytes = input.readAllBytes();
+                }
+                entries.put(entry.getName(), new EntryIdentity(
+                        HexFormat.of().formatHex(MessageDigest.getInstance("SHA-256").digest(bytes)),
+                        entry.getSize(), entry.getCrc(), entry.getTime(), entry.getComment(),
+                        entry.getExtra() == null ? "" : HexFormat.of().formatHex(entry.getExtra())));
+            }
+        }
+        return entries;
+    }
+
+    private record EntryIdentity(String sha256, long size, long crc, long time, String comment, String extra) {
+    }
 }

core/agent/build.gradle

@@ -4,6 +4,14 @@ plugins {
     id 'java'
 }
 
+repositories {
+    mavenCentral()
+}
+
+dependencies {
+    testImplementation('junit:junit:4.13.2')
+}
+
 tasks.named('jar', Jar).configure {
     manifest.attributes(
         'Agent-Class': 'art.arcane.iris.util.project.agent.Installer',

core/agent/src/main/java/art/arcane/iris/util/agent/Installer.java

@@ -1,9 +1,41 @@
 package art.arcane.iris.util.project.agent;
 
 import java.lang.instrument.Instrumentation;
+import java.io.Closeable;
+import java.io.IOException;
+import java.util.IdentityHashMap;
+import java.util.Map;
+import java.util.Objects;
 
 public class Installer {
     private static volatile Instrumentation instrumentation;
+    private static final Map<ClassLoader, Boolean> retainedClassLoaders = new IdentityHashMap<>();
+
+    public static synchronized void retainClassLoader(ClassLoader loader) {
+        ClassLoader requiredLoader = Objects.requireNonNull(loader, "Plugin class loader");
+        if (!(requiredLoader instanceof Closeable)) {
+            throw new IllegalArgumentException("Plugin class loader is not closeable");
+        }
+        retainedClassLoaders.putIfAbsent(requiredLoader, false);
+    }
+
+    public static synchronized boolean deferClassLoaderClose(ClassLoader loader) {
+        if (!retainedClassLoaders.containsKey(loader)) {
+            return false;
+        }
+        retainedClassLoaders.put(loader, true);
+        return true;
+    }
+
+    public static void releaseClassLoader(ClassLoader loader) throws IOException {
+        boolean closeRequested;
+        synchronized (Installer.class) {
+            closeRequested = Boolean.TRUE.equals(retainedClassLoaders.remove(loader));
+        }
+        if (closeRequested) {
+            ((Closeable) loader).close();
+        }
+    }
 
     public static Instrumentation getInstrumentation() {
         Instrumentation instrumentation = Installer.instrumentation;
@@ -26,4 +58,4 @@ public class Installer {
             return;
         Installer.instrumentation = instrumentation;
     }
-}
+}

core/agent/src/test/java/art/arcane/iris/util/project/agent/ClassLoaderCloseDeferralTest.java

@@ -0,0 +1,164 @@
+package art.arcane.iris.util.project.agent;
+
+import org.junit.Test;
+
+import java.io.IOException;
+import java.io.InputStream;
+import java.net.URL;
+import java.net.URLClassLoader;
+import java.nio.charset.StandardCharsets;
+import java.nio.file.Files;
+import java.nio.file.Path;
+import java.util.concurrent.CountDownLatch;
+import java.util.concurrent.TimeUnit;
+import java.util.concurrent.atomic.AtomicInteger;
+import java.util.concurrent.atomic.AtomicReference;
+import java.util.jar.JarEntry;
+import java.util.jar.JarOutputStream;
+
+import static org.junit.Assert.assertEquals;
+import static org.junit.Assert.assertFalse;
+import static org.junit.Assert.assertNull;
+import static org.junit.Assert.assertTrue;
+
+public class ClassLoaderCloseDeferralTest {
+    @Test
+    public void unarmedPluginDisableClosesNormally() throws Exception {
+        TestLoader loader = new TestLoader(new URL[0]);
+
+        loader.close();
+        Installer.releaseClassLoader(loader);
+
+        assertEquals(1, loader.closes.get());
+    }
+
+    @Test
+    public void holdingOnePluginDoesNotHoldAnotherEqualLoader() throws Exception {
+        TestLoader iris = new TestLoader(new URL[0]);
+        TestLoader other = new TestLoader(new URL[0]);
+        Installer.retainClassLoader(iris);
+        try {
+            other.close();
+            iris.close();
+
+            assertEquals(1, other.closes.get());
+            assertEquals(0, iris.closes.get());
+        } finally {
+            Installer.releaseClassLoader(iris);
+        }
+        assertEquals(1, iris.closes.get());
+    }
+
+    @Test
+    public void deferredJarRemainsReadableUntilCleanupReleasesIt() throws Exception {
+        Path jar = Files.createTempFile("iris-loader-close", ".jar");
+        try {
+            try (JarOutputStream output = new JarOutputStream(Files.newOutputStream(jar))) {
+                output.putNextEntry(new JarEntry("late-cleanup.txt"));
+                output.write("available".getBytes(StandardCharsets.UTF_8));
+                output.closeEntry();
+            }
+            TestLoader loader = new TestLoader(new URL[]{jar.toUri().toURL()});
+            Installer.retainClassLoader(loader);
+            try {
+                loader.close();
+                loader.close();
+                try (InputStream input = loader.getResourceAsStream("late-cleanup.txt")) {
+                    assertEquals("available", new String(input.readAllBytes(), StandardCharsets.UTF_8));
+                }
+            } finally {
+                Installer.releaseClassLoader(loader);
+            }
+            Installer.releaseClassLoader(loader);
+            assertEquals(1, loader.closes.get());
+            assertNull(loader.getResourceAsStream("late-cleanup.txt"));
+        } finally {
+            Files.delete(jar);
+        }
+    }
+
+    @Test
+    public void cancellingBeforePaperRequestsCloseDoesNotCloseTheLoader() throws Exception {
+        TestLoader loader = new TestLoader(new URL[0]);
+        Installer.retainClassLoader(loader);
+        Installer.releaseClassLoader(loader);
+
+        assertEquals(0, loader.closes.get());
+        loader.close();
+        assertEquals(1, loader.closes.get());
+    }
+
+    @Test
+    public void concurrentReleaseClosesOnceOutsideLifecycleLock() throws Exception {
+        TestLoader loader = new TestLoader(new URL[0]);
+        loader.closeEntered = new CountDownLatch(1);
+        loader.finishClose = new CountDownLatch(1);
+        Installer.retainClassLoader(loader);
+        loader.close();
+        AtomicReference<Throwable> failure = new AtomicReference<>();
+        Thread first = new Thread(() -> release(loader, failure), "first-loader-release");
+        first.start();
+        try {
+            assertTrue(loader.closeEntered.await(5L, TimeUnit.SECONDS));
+            Thread second = new Thread(() -> release(loader, failure), "second-loader-release");
+            second.start();
+            second.join(5000L);
+            assertFalse(second.isAlive());
+            assertEquals(1, loader.closes.get());
+        } finally {
+            loader.finishClose.countDown();
+            first.join(5000L);
+        }
+        assertFalse(first.isAlive());
+        assertNull(failure.get());
+    }
+
+    private static void release(TestLoader loader, AtomicReference<Throwable> failure) {
+        try {
+            Installer.releaseClassLoader(loader);
+        } catch (Throwable exception) {
+            failure.compareAndSet(null, exception);
+        }
+    }
+
+    private static final class TestLoader extends URLClassLoader {
+        private final AtomicInteger closes = new AtomicInteger();
+        private CountDownLatch closeEntered;
+        private CountDownLatch finishClose;
+
+        private TestLoader(URL[] urls) {
+            super(urls, ClassLoader.getPlatformClassLoader());
+        }
+
+        @Override
+        public void close() throws IOException {
+            if (Installer.deferClassLoaderClose(this)) {
+                return;
+            }
+            assertFalse(Thread.holdsLock(Installer.class));
+            closes.incrementAndGet();
+            if (closeEntered != null) {
+                closeEntered.countDown();
+                try {
+                    if (!finishClose.await(5L, TimeUnit.SECONDS)) {
+                        throw new IOException("Loader close was not released");
+                    }
+                } catch (InterruptedException exception) {
+                    Thread.currentThread().interrupt();
+                    throw new IOException(exception);
+                }
+            }
+            super.close();
+        }
+
+        @Override
+        public boolean equals(Object other) {
+            return other instanceof TestLoader;
+        }
+
+        @Override
+        public int hashCode() {
+            return 1;
+        }
+    }
+}

core/build.gradle

@@ -128,6 +128,7 @@ dependencies {
     testImplementation('junit:junit:4.13.2')
     testImplementation('org.mockito:mockito-core:5.23.0')
     testImplementation(libs.paper.api)
+    testImplementation(libs.log4j.core)
     testRuntimeOnly(libs.paper.api)
     testImplementation(libs.multiverseCore)
 }
@@ -520,3 +521,5 @@ tasks.register('bukkitPurityRatchet') {
 tasks.named('check').configure {
     dependsOn('bukkitPurityRatchet')
 }
+
+apply from: rootProject.file('gradle/generation-kernel-seals.gradle')

core/generation-kernels/catalog.tsv

@@ -0,0 +1,3 @@
+iris-generation-kernel-catalog-v1
+current	1	1	1
+kernel	1

core/src/main/java/art/arcane/iris/core/IrisDatapackCompiler.java

@@ -9,8 +9,14 @@ import art.arcane.iris.core.nms.datapack.DataVersion;
 import art.arcane.iris.core.nms.datapack.IDataFixer;
 import art.arcane.iris.core.pack.AtomicDirectoryPublisher;
 import art.arcane.iris.core.pack.PackDirectoryResolver;
+import art.arcane.iris.engine.history.GenerationEpoch;
+import art.arcane.iris.engine.history.GenerationHistory;
+import art.arcane.iris.engine.history.GenerationRegistryContract;
+import art.arcane.iris.engine.history.GenerationRegistryContract.PhysicalResourceKey;
+import art.arcane.iris.engine.history.GenerationRegistryContractFactory;
 import art.arcane.iris.engine.object.IrisBiome;
 import art.arcane.iris.engine.object.IrisBiomeCustom;
+import art.arcane.iris.engine.object.IrisCustomBiomeAliasResolver;
 import art.arcane.iris.engine.object.IrisDimension;
 import art.arcane.iris.spi.IrisLogging;
 import art.arcane.volmlib.util.collection.KList;
@@ -40,13 +46,14 @@ import java.util.Locale;
 import java.util.Map;
 import java.util.Objects;
 import java.util.Set;
+import java.util.TreeMap;
 import java.util.TreeSet;
 import java.util.concurrent.atomic.AtomicIntegerArray;
 import java.util.regex.Pattern;
 import java.util.stream.Stream;
 
 public final class IrisDatapackCompiler {
-    private static final int INPUT_FINGERPRINT_SCHEMA = 2;
+    private static final int INPUT_FINGERPRINT_SCHEMA = 3;
     private static final int INPUT_BUFFER_BYTES = 64 * 1024;
     private static final int WORLD_PACK_SCAN_DEPTH = 8;
     private static final Pattern REGISTRY_KEY_PATTERN = Pattern.compile("[a-z0-9_.-]+:[a-z0-9/._-]+");
@@ -90,6 +97,7 @@ public final class IrisDatapackCompiler {
     ) throws IOException {
         LinkedHashMap<Path, File> roots = new LinkedHashMap<>();
         collectInstalledPackRoots(dataDirectory.resolve("packs"), roots, validateWholePack);
+        collectCanonicalWorldPackRoot(serverRoot, roots, validateWholePack);
         collectWorldPackRoots(serverRoot.resolve("dimensions"), roots, validateWholePack);
         return new ArrayList<>(roots.values());
     }
@@ -179,14 +187,18 @@ public final class IrisDatapackCompiler {
         Objects.requireNonNull(packRoots, "packRoots");
         Objects.requireNonNull(fixer, "fixer");
         LinkedHashMap<String, String> requirements = new LinkedHashMap<>();
-        Set<String> installedBiomeKeys = new LinkedHashSet<>();
+        Map<String, Set<String>> biomeTags = new TreeMap<>();
         for (File packRoot : packRoots) {
             PackDirectoryResolver.requireSafePackTree(packRoot);
             if (!hasDimensions(packRoot.toPath())) {
                 continue;
             }
+            BiomeAliasContext aliasContext = biomeAliasContext(packRoot.toPath());
             IrisData data = IrisData.openDatapackCompiler(packRoot);
             try {
+                if (aliasContext.retainedContract() != null) {
+                    data.bindGenerationRegistryContract(aliasContext.retainedContract());
+                }
                 ResourceLoader<IrisDimension> loader = data.getDimensionLoader();
                 String[] possibleKeys = loader.getPossibleKeys();
                 if (possibleKeys == null || possibleKeys.length == 0) {
@@ -199,14 +211,16 @@ public final class IrisDatapackCompiler {
                     }
                     collectRegistryRequirements(
                             requirements,
-                            installedBiomeKeys,
+                            biomeTags,
                             dimension,
-                            fixer);
+                            fixer,
+                            aliasContext);
                 }
             } finally {
                 data.close();
             }
         }
+        addBiomeTagRequirements(requirements, biomeTags);
         return Map.copyOf(requirements);
     }
 
@@ -216,23 +230,35 @@ public final class IrisDatapackCompiler {
     ) throws IOException {
         IrisDimension requiredDimension = Objects.requireNonNull(dimension, "dimension");
         IDataFixer requiredFixer = Objects.requireNonNull(fixer, "fixer");
+        IrisData data = Objects.requireNonNull(
+                requiredDimension.getLoader(),
+                "Iris dimension loader"
+        );
         LinkedHashMap<String, String> requirements = new LinkedHashMap<>();
+        Map<String, Set<String>> biomeTags = new TreeMap<>();
+        BiomeAliasContext aliasContext = BiomeAliasContext.contentAddressedOnly();
         collectRegistryRequirements(
                 requirements,
-                new LinkedHashSet<>(),
+                biomeTags,
                 requiredDimension,
-                requiredFixer);
+                requiredFixer,
+                aliasContext);
         collectDimensionStackRegistryRequirements(
                 requirements,
+                biomeTags,
                 requiredDimension,
-                requiredFixer);
+                requiredFixer,
+                aliasContext);
+        addBiomeTagRequirements(requirements, biomeTags);
         return Map.copyOf(requirements);
     }
 
     private static void collectDimensionStackRegistryRequirements(
             Map<String, String> requirements,
+            Map<String, Set<String>> biomeTags,
             IrisDimension hostDimension,
-            IDataFixer fixer
+            IDataFixer fixer,
+            BiomeAliasContext aliasContext
     ) throws IOException {
         if (!hostDimension.hasDimensionStack()) {
             return;
@@ -255,21 +281,31 @@ public final class IrisDatapackCompiler {
             }
             collectRegistryRequirements(
                     requirements,
-                    new LinkedHashSet<>(),
+                    biomeTags,
                     sourceDimension,
-                    fixer);
+                    fixer,
+                    aliasContext);
         }
     }
 
     private static void collectRegistryRequirements(
             Map<String, String> requirements,
-            Set<String> installedBiomeKeys,
+            Map<String, Set<String>> biomeTags,
             IrisDimension dimension,
-            IDataFixer fixer
-    ) {
-        requirements.put(
-                "dimension_type/iris:" + dimension.getDimensionTypeKey(),
-                fingerprintContent(dimension.getDimensionType().toJson(fixer)));
+            IDataFixer fixer,
+            BiomeAliasContext aliasContext
+    ) throws IOException {
+        String dimensionTypeResourceKey = "iris:" + dimension.getDimensionTypeKey();
+        String dimensionTypeSource = aliasContext.generatedSource(
+                GenerationRegistryContractFactory.DIMENSION_TYPE_REGISTRY,
+                dimensionTypeResourceKey,
+                dimension.getDimensionType().toJson(fixer),
+                fixer
+        );
+        putRegistryRequirement(
+                requirements,
+                "dimension_type/" + dimensionTypeResourceKey,
+                fingerprintContent(dimensionTypeSource));
 
         ContentGate contentGate = dimension.getLoader() == null ? null : dimension.getLoader().getContentGate();
         for (IrisBiome biome : dimension.getAllBiomes(dimension::getLoader)) {
@@ -281,13 +317,25 @@ public final class IrisDatapackCompiler {
                 if (customBiome == null) {
                     continue;
                 }
-                String biomeKey = dimension.getCustomBiomeKey(customBiome.getId());
-                if (!installedBiomeKeys.add(biomeKey)) {
-                    continue;
+                String json = customBiome.generateJson(fixer, contentGate);
+                String currentPhysicalKey = GenerationRegistryContractFactory.customBiomeResourceKey(
+                        dimension.getLoadKey(),
+                        customBiome,
+                        contentGate
+                );
+                String physicalKey = aliasContext.physicalResourceKey(
+                        dimension,
+                        biome,
+                        customBiome,
+                        currentPhysicalKey
+                );
+                LinkedHashSet<String> resourceKeys = new LinkedHashSet<>();
+                resourceKeys.add(physicalKey);
+                Collection<String> aliases = aliasContext.aliases(dimension, biome, customBiome, physicalKey);
+                if (!aliases.isEmpty() && physicalKey.equals(dimension.getLoader()
+                        .customBiomeResourceKey(dimension, customBiome.getId()))) {
+                    resourceKeys.addAll(aliases);
                 }
-                requirements.put(
-                        "worldgen/biome/" + biomeKey,
-                        fingerprintContent(customBiome.generateJson(fixer, contentGate)));
                 TreeSet<String> tags = new TreeSet<>();
                 for (String tag : customBiome.getEffectiveTags(derivativeKey)) {
                     String normalizedTag = normalizeRegistryKey(tag);
@@ -295,13 +343,48 @@ public final class IrisDatapackCompiler {
                         tags.add(normalizedTag);
                     }
                 }
-                requirements.put(
-                        "worldgen/biome_tags/" + biomeKey,
-                        fingerprintContent(String.join("\n", tags)));
+                for (String resourceKey : resourceKeys) {
+                    String emittedJson = aliasContext.generatedSource(
+                            GenerationRegistryContractFactory.BIOME_REGISTRY,
+                            resourceKey,
+                            json,
+                            fixer
+                    );
+                    putRegistryRequirement(
+                            requirements,
+                            "worldgen/biome/" + resourceKey,
+                            fingerprintContent(emittedJson)
+                    );
+                    biomeTags.computeIfAbsent(resourceKey, ignored -> new TreeSet<>()).addAll(tags);
+                }
             }
         }
     }
 
+    private static void addBiomeTagRequirements(
+            Map<String, String> requirements,
+            Map<String, Set<String>> biomeTags
+    ) throws IOException {
+        for (Map.Entry<String, Set<String>> entry : biomeTags.entrySet()) {
+            putRegistryRequirement(
+                    requirements,
+                    "worldgen/biome_tags/" + entry.getKey(),
+                    fingerprintContent(String.join("\n", entry.getValue()))
+            );
+        }
+    }
+
+    private static void putRegistryRequirement(
+            Map<String, String> requirements,
+            String resourceKey,
+            String contentFingerprint
+    ) throws IOException {
+        String previous = requirements.putIfAbsent(resourceKey, contentFingerprint);
+        if (previous != null && !previous.equals(contentFingerprint)) {
+            throw new IOException("Conflicting Iris datapack registry resource '" + resourceKey + "'.");
+        }
+    }
+
     private static String normalizeRegistryKey(String key) {
         if (key == null || key.isBlank()) {
             return null;
@@ -359,8 +442,12 @@ public final class IrisDatapackCompiler {
             if (!hasDimensions(packRoot.toPath())) {
                 continue;
             }
+            BiomeAliasContext aliasContext = biomeAliasContext(packRoot.toPath());
             IrisData data = IrisData.openDatapackCompiler(packRoot);
             try {
+                if (aliasContext.retainedContract() != null) {
+                    data.bindGenerationRegistryContract(aliasContext.retainedContract());
+                }
                 ResourceLoader<IrisDimension> loader = data.getDimensionLoader();
                 String[] possibleKeys = loader.getPossibleKeys();
                 if (possibleKeys == null || possibleKeys.length == 0) {
@@ -379,11 +466,22 @@ public final class IrisDatapackCompiler {
                             .add(new DimensionCandidate(
                                     dimension,
                                     packRoot.toPath().toAbsolutePath().normalize(),
-                                    dimension.getDimensionType().toJson(fixer)
+                                    aliasContext.generatedSource(
+                                            GenerationRegistryContractFactory.DIMENSION_TYPE_REGISTRY,
+                                            "iris:" + dimension.getDimensionTypeKey(),
+                                            dimension.getDimensionType().toJson(fixer),
+                                            fixer
+                                    )
                             ));
                     KSet<String> seenBiomes = biomes.computeIfAbsent(dimension.getLoadKey(), ignored -> new KSet<>());
-                    dimension.installBiomes(fixer, dimension::getLoader, datapackRoots, seenBiomes);
-                    dimension.installDimensionType(fixer, datapackRoots);
+                    dimension.installBiomes(
+                            fixer,
+                            dimension::getLoader,
+                            datapackRoots,
+                            seenBiomes,
+                            aliasContext
+                    );
+                    dimension.installDimensionType(fixer, datapackRoots, aliasContext);
                     installedDimensions++;
                     dimensionCount++;
                 }
@@ -501,6 +599,23 @@ public final class IrisDatapackCompiler {
         }
     }
 
+    private static void collectCanonicalWorldPackRoot(
+            Path worldRoot,
+            Map<Path, File> roots,
+            boolean validateWholePack
+    ) throws IOException {
+        if (Files.isSymbolicLink(worldRoot)
+                || !Files.isDirectory(worldRoot, LinkOption.NOFOLLOW_LINKS)) {
+            return;
+        }
+        List<Path> candidates = new ArrayList<>();
+        collectWorldRootPackRoots(worldRoot, candidates);
+        candidates.sort(Comparator.comparing(Path::toString));
+        for (Path candidate : candidates) {
+            addPackRoot(candidate, roots, validateWholePack);
+        }
+    }
+
     private static void collectNamespaceWorldPackRoots(
             Path namespace,
             List<Path> candidates
@@ -510,18 +625,12 @@ public final class IrisDatapackCompiler {
             public FileVisitResult preVisitDirectory(
                     Path directory,
                     BasicFileAttributes attributes
-            ) {
+            ) throws IOException {
                 if (!directory.equals(namespace)
                         && PackDirectoryResolver.isHiddenName(directory.getFileName().toString())) {
                     return FileVisitResult.SKIP_SUBTREE;
                 }
-                Path irisRoot = directory.resolve("iris");
-                Path candidate = irisRoot.resolve("pack");
-                if (!Files.isSymbolicLink(irisRoot)
-                        && !Files.isSymbolicLink(candidate)
-                        && Files.isDirectory(candidate, LinkOption.NOFOLLOW_LINKS)
-                        && hasDimensions(candidate)) {
-                    candidates.add(candidate);
+                if (collectWorldRootPackRoots(directory, candidates)) {
                     return FileVisitResult.SKIP_SUBTREE;
                 }
                 return FileVisitResult.CONTINUE;
@@ -529,6 +638,35 @@ public final class IrisDatapackCompiler {
         });
     }
 
+    private static boolean collectWorldRootPackRoots(
+            Path worldRoot,
+            List<Path> candidates
+    ) throws IOException {
+        Path irisRoot = worldRoot.resolve("iris");
+        Path generationRoot = irisRoot.resolve("generation");
+        if (!Files.isSymbolicLink(irisRoot)
+                && (Files.exists(generationRoot, LinkOption.NOFOLLOW_LINKS)
+                || Files.isSymbolicLink(generationRoot))) {
+            GenerationHistory history = GenerationHistory.open(worldRoot);
+            for (GenerationEpoch epoch : history.manifest().epochs()) {
+                Path retainedPack = history.paths().packRoot(epoch.epochId());
+                if (hasDimensions(retainedPack)) {
+                    candidates.add(retainedPack);
+                }
+            }
+            return true;
+        }
+        Path legacyPack = irisRoot.resolve("pack");
+        if (!Files.isSymbolicLink(irisRoot)
+                && !Files.isSymbolicLink(legacyPack)
+                && Files.isDirectory(legacyPack, LinkOption.NOFOLLOW_LINKS)
+                && hasDimensions(legacyPack)) {
+            candidates.add(legacyPack);
+            return true;
+        }
+        return false;
+    }
+
     private static List<Path> visibleDirectories(Path root) throws IOException {
         try (Stream<Path> entries = Files.list(root)) {
             return entries
@@ -562,6 +700,43 @@ public final class IrisDatapackCompiler {
         roots.putIfAbsent(identity, normalized.toFile());
     }
 
+    private static BiomeAliasContext biomeAliasContext(Path packRoot) throws IOException {
+        Path normalizedRoot = packRoot.toAbsolutePath().normalize();
+        Path rootParent = normalizedRoot.getParent();
+        if (rootParent == null || !"pack".equals(normalizedRoot.getFileName().toString())) {
+            return BiomeAliasContext.contentAddressedOnly();
+        }
+        if ("iris".equals(rootParent.getFileName().toString())) {
+            return BiomeAliasContext.legacyPack();
+        }
+
+        Path epochsRoot = rootParent.getParent();
+        Path generationRoot = epochsRoot == null ? null : epochsRoot.getParent();
+        Path irisRoot = generationRoot == null ? null : generationRoot.getParent();
+        Path dimensionRoot = irisRoot == null ? null : irisRoot.getParent();
+        if (epochsRoot == null
+                || generationRoot == null
+                || irisRoot == null
+                || dimensionRoot == null
+                || !"epochs".equals(epochsRoot.getFileName().toString())
+                || !"generation".equals(generationRoot.getFileName().toString())
+                || !"iris".equals(irisRoot.getFileName().toString())) {
+            return BiomeAliasContext.contentAddressedOnly();
+        }
+
+        String epochId = rootParent.getFileName().toString();
+        GenerationHistory history = GenerationHistory.open(dimensionRoot);
+        GenerationEpoch epoch = history.manifest().epoch(epochId).orElseThrow(
+                () -> new IOException("Retained Iris pack is not referenced by its generation history: "
+                        + normalizedRoot)
+        );
+        Path expectedRoot = history.paths().packRoot(epochId).toAbsolutePath().normalize();
+        if (!expectedRoot.equals(normalizedRoot)) {
+            throw new IOException("Retained Iris pack does not match its generation history: " + normalizedRoot);
+        }
+        return BiomeAliasContext.retained(epoch.registryContract());
+    }
+
     private static boolean hasDimensions(Path root) {
         Path dimensions = root.resolve("dimensions");
         if (Files.isSymbolicLink(dimensions)
@@ -704,6 +879,75 @@ public final class IrisDatapackCompiler {
     ) {
     }
 
+    private record BiomeAliasContext(
+            boolean retainAllLegacyAliases,
+            GenerationRegistryContract retainedContract
+    ) implements IrisCustomBiomeAliasResolver {
+        private static BiomeAliasContext contentAddressedOnly() {
+            return new BiomeAliasContext(false, null);
+        }
+
+        private static BiomeAliasContext legacyPack() {
+            return new BiomeAliasContext(true, null);
+        }
+
+        private static BiomeAliasContext retained(GenerationRegistryContract registryContract) {
+            return new BiomeAliasContext(
+                    false,
+                    Objects.requireNonNull(registryContract, "registryContract")
+            );
+        }
+
+        @Override
+        public String physicalResourceKey(
+                IrisDimension dimension,
+                IrisBiome biome,
+                IrisBiomeCustom customBiome,
+                String currentPhysicalResourceKey
+        ) throws IOException {
+            if (retainedContract == null) {
+                return currentPhysicalResourceKey;
+            }
+            return dimension.getLoader().customBiomeResourceKey(dimension, customBiome);
+        }
+
+        @Override
+        public Collection<String> aliases(
+                IrisDimension dimension,
+                IrisBiome biome,
+                IrisBiomeCustom customBiome,
+                String physicalResourceKey
+        ) {
+            String alias = dimension.getLoadKey().toLowerCase(Locale.ROOT)
+                    + ":" + customBiome.getId().toLowerCase(Locale.ROOT);
+            if (retainAllLegacyAliases) {
+                return List.of(alias);
+            }
+            if (retainedContract == null) {
+                return List.of();
+            }
+            PhysicalResourceKey key = new PhysicalResourceKey(
+                    GenerationRegistryContractFactory.BIOME_REGISTRY,
+                    alias
+            );
+            return retainedContract.definitions().containsKey(key) ? List.of(alias) : List.of();
+        }
+
+        @Override
+        public String generatedSource(
+                String registryKey,
+                String resourceKey,
+                String currentSource,
+                IDataFixer fixer
+        ) throws IOException {
+            if (retainedContract == null) {
+                return currentSource;
+            }
+            PhysicalResourceKey key = new PhysicalResourceKey(registryKey, resourceKey);
+            return GenerationRegistryContractFactory.renderGeneratedSource(retainedContract, key, fixer);
+        }
+    }
+
     public static final class DimensionHeight {
         private final IDataFixer fixer;
         private final AtomicIntegerArray[] dimensions = new AtomicIntegerArray[3];

core/src/main/java/art/arcane/iris/core/IrisSettings.java

@@ -349,6 +349,11 @@ public class IrisSettings {
     public static class IrisSettingsGenerator {
         public String defaultWorldType = "overworld";
         public boolean preventLeafDecay = true;
+        public int generationTransitionWidthBlocks = 256;
+
+        public int getGenerationTransitionWidthBlocks() {
+            return Math.max(16, Math.min(generationTransitionWidthBlocks, 8_192));
+        }
     }
 
     @Data

core/src/main/java/art/arcane/iris/core/IrisWorldStorage.java

@@ -1,5 +1,6 @@
 package art.arcane.iris.core;
 
+import art.arcane.iris.engine.history.GenerationHistory;
 import art.arcane.volmlib.util.bukkit.WorldIdentity;
 import org.bukkit.Bukkit;
 import org.bukkit.NamespacedKey;
@@ -404,10 +405,6 @@ public final class IrisWorldStorage {
         return Optional.ofNullable(NamespacedKey.fromString(namespace + ":" + key));
     }
 
-    public static File packRoot(NamespacedKey key) {
-        return new File(dimensionRoot(key), "iris/pack");
-    }
-
     public static File requireFrozenDimensionRoot(
             File worldContainer,
             File levelRoot,
@@ -485,26 +482,28 @@ public final class IrisWorldStorage {
         return configuredRoot;
     }
 
-    public static File requireFrozenPackRoot(File dimensionRoot) {
+    public static File requireActiveGenerationPackRoot(File dimensionRoot) {
         Path root = Objects.requireNonNull(dimensionRoot, "dimensionRoot")
                 .toPath()
                 .toAbsolutePath()
                 .normalize();
-        Path irisRoot = root.resolve("iris");
-        Path packRoot = irisRoot.resolve("pack");
-        for (Path path : new Path[]{root, irisRoot, packRoot}) {
-            if (Files.isSymbolicLink(path)) {
-                throw new IllegalStateException("Frozen Iris pack path contains a symbolic link: " + path);
-            }
-            if (Files.exists(path, LinkOption.NOFOLLOW_LINKS)
-                    && !Files.isDirectory(path, LinkOption.NOFOLLOW_LINKS)) {
-                throw new IllegalStateException("Frozen Iris pack path is not a directory: " + path);
-            }
+        try {
+            return GenerationHistory.open(root).activePackRoot().toFile();
+        } catch (IOException failure) {
+            throw new IllegalStateException("Iris generation history is unusable at " + root + ".", failure);
         }
-        if (!Files.isDirectory(packRoot, LinkOption.NOFOLLOW_LINKS)) {
-            throw new IllegalStateException("Frozen Iris pack snapshot is missing: " + packRoot);
+    }
+
+    public static File requireActiveGenerationPackRoot(File dimensionRoot, long expectedWorldSeed) {
+        Path root = Objects.requireNonNull(dimensionRoot, "dimensionRoot")
+                .toPath()
+                .toAbsolutePath()
+                .normalize();
+        try {
+            return GenerationHistory.open(root, expectedWorldSeed).activePackRoot().toFile();
+        } catch (IOException failure) {
+            throw new IllegalStateException("Iris generation history is unusable at " + root + ".", failure);
         }
-        return packRoot.toFile();
     }
 
     private static boolean isExistingSafeDimensionRoot(Path storageRoot, Path dimensionRoot) {

core/src/main/java/art/arcane/iris/core/IrisWorlds.java

@@ -367,7 +367,7 @@ public class IrisWorlds {
                 configuredWorldName,
                 worldKey
         );
-        return dimensionRoot.map(IrisWorldStorage::requireFrozenPackRoot);
+        return dimensionRoot.map(IrisWorldStorage::requireActiveGenerationPackRoot);
     }
 
     private static void warnUnusableStorage(String worldIdentity, IllegalStateException failure) {
@@ -376,7 +376,7 @@ public class IrisWorlds {
         }
         IrisLogging.error("Iris world %s has unusable world storage and is excluded: %s",
                 worldIdentity, failure.getMessage());
-        IrisLogging.error("Restore its iris/pack snapshot, or drop the world with /iris remove world=%s delete=true.",
+        IrisLogging.error("Restore its iris/generation history, or drop the world with /iris remove world=%s delete=true.",
                 worldIdentity);
     }
 

core/src/main/java/art/arcane/iris/core/ServerConfigurator.java

@@ -1121,7 +1121,7 @@ public class ServerConfigurator {
         for (IrisBiome i : dimension.getAllBiomes(dimension::getLoader)) {
             if (i.isCustom()) {
                 for (IrisBiomeCustom j : i.getCustomDerivitives()) {
-                    keys.add(dimension.getCustomBiomeKey(j.getId()));
+                    keys.add(dimension.getLoader().customBiomeResourceKey(dimension, j));
                 }
             }
         }

core/src/main/java/art/arcane/iris/core/lifecycle/BukkitWorldConfiguration.java

@@ -3,6 +3,7 @@ package art.arcane.iris.core.lifecycle;
 import art.arcane.iris.core.IrisWorldStorage;
 import art.arcane.iris.core.WorldSlotKey;
 import art.arcane.iris.engine.IrisEngineMantle;
+import art.arcane.iris.engine.history.GenerationHistoryPaths;
 import org.bukkit.NamespacedKey;
 import org.bukkit.configuration.ConfigurationSection;
 import org.bukkit.configuration.InvalidConfigurationException;
@@ -229,8 +230,20 @@ public final class BukkitWorldConfiguration {
         }
         Path resolvedRoot = dimensionRoot.toPath().toAbsolutePath().normalize();
         try {
-            IrisWorldStorage.requireFrozenPackRoot(dimensionRoot);
+            IrisWorldStorage.requireActiveGenerationPackRoot(dimensionRoot);
         } catch (IllegalStateException unusablePack) {
+            GenerationHistoryPaths historyPaths = GenerationHistoryPaths.forDimension(resolvedRoot);
+            boolean generationHistoryExists = Files.exists(
+                    historyPaths.generationRoot(),
+                    LinkOption.NOFOLLOW_LINKS
+            ) || Files.isSymbolicLink(historyPaths.generationRoot());
+            boolean adoptableLegacyPack = !generationHistoryExists
+                    && Files.isDirectory(historyPaths.legacyPackRoot(), LinkOption.NOFOLLOW_LINKS)
+                    && !Files.isSymbolicLink(historyPaths.legacyPackRoot());
+            if (adoptableLegacyPack) {
+                return new IrisWorldStorageEntry(configuredName, slotKey, resolvedRoot,
+                        IrisWorldStorageState.PRESENT, null);
+            }
             // Only a folder that owns something can be corrupted by a vanilla generator writing into it.
             return new IrisWorldStorageEntry(configuredName, slotKey, resolvedRoot,
                     hasWorldData(resolvedRoot)

core/src/main/java/art/arcane/iris/core/lifecycle/WorldReplacementFilesystem.java

@@ -2,6 +2,7 @@ package art.arcane.iris.core.lifecycle;
 
 import art.arcane.iris.core.ExactWorldSlotPathPolicy;
 import art.arcane.iris.core.SnapshotDirectoryTreeDeleter;
+import art.arcane.iris.engine.history.GenerationHistory;
 import art.arcane.iris.core.pack.PackDirectoryResolver;
 
 import java.io.IOException;
@@ -94,7 +95,7 @@ public final class WorldReplacementFilesystem {
         State state = inspect(requiredPaths);
         if (state.stagePresent()) {
             requireSafeTree(requiredPaths.stage(), "replacement stage");
-            requireFingerprint(requiredPaths.stage().resolve("iris/pack"), expectedFingerprint);
+            requireFingerprint(activePackRoot(requiredPaths.stage()), expectedFingerprint);
             if (originalTargetPresent) {
                 Path retainedWorld = state.targetPresent()
                         ? requiredPaths.target()
@@ -118,7 +119,7 @@ public final class WorldReplacementFilesystem {
                 throw new IOException("Replacement backup state does not match the original target state.");
             }
             requireSafeTree(requiredPaths.stage(), "replacement stage");
-            requireFingerprint(requiredPaths.stage().resolve("iris/pack"), expectedFingerprint);
+            requireFingerprint(activePackRoot(requiredPaths.stage()), expectedFingerprint);
             move(requiredPaths.stage(), requiredPaths.target());
             state = inspect(requiredPaths);
         }
@@ -130,11 +131,11 @@ public final class WorldReplacementFilesystem {
             throw new IOException("Replacement publication lost or unexpectedly created its backup.");
         }
         requireSafeTree(requiredPaths.target(), "replacement target");
-        requireFingerprint(requiredPaths.target().resolve("iris/pack"), expectedFingerprint);
+        requireFingerprint(activePackRoot(requiredPaths.target()), expectedFingerprint);
         if (originalTargetPresent) {
             preservePaperWorldMetadata(requiredPaths.backup(), requiredPaths.target());
             requireSafeTree(requiredPaths.target(), "replacement target");
-            requireFingerprint(requiredPaths.target().resolve("iris/pack"), expectedFingerprint);
+            requireFingerprint(activePackRoot(requiredPaths.target()), expectedFingerprint);
         }
     }
 
@@ -224,7 +225,7 @@ public final class WorldReplacementFilesystem {
             throw new IOException("Committed replacement storage does not contain one exact target directory.");
         }
         requireSafeTree(requiredPaths.target(), "replacement target");
-        requireFingerprint(requiredPaths.target().resolve("iris/pack"), expectedFingerprint);
+        requireFingerprint(activePackRoot(requiredPaths.target()), expectedFingerprint);
     }
 
     public static void validatePublishedTarget(
@@ -240,7 +241,7 @@ public final class WorldReplacementFilesystem {
             throw new IOException("Published replacement storage does not match its retained-world contract.");
         }
         requireSafeTree(requiredPaths.target(), "replacement target");
-        requireFingerprint(requiredPaths.target().resolve("iris/pack"), expectedFingerprint);
+        requireFingerprint(activePackRoot(requiredPaths.target()), expectedFingerprint);
     }
 
     public static String fingerprintPack(Path packRoot) throws IOException {
@@ -279,6 +280,10 @@ public final class WorldReplacementFilesystem {
         return HexFormat.of().formatHex(digest.digest());
     }
 
+    private static Path activePackRoot(Path worldRoot) throws IOException {
+        return GenerationHistory.open(worldRoot).activePackRoot();
+    }
+
     private static FingerprintEntry fingerprintEntry(Path root, Path path) {
         Path relative = root.relativize(path);
         return new FingerprintEntry(path, relative, relative.toString());

core/src/main/java/art/arcane/iris/core/loader/IrisData.java

@@ -39,9 +39,14 @@ import art.arcane.iris.engine.data.cache.AtomicCache;
 import art.arcane.iris.engine.framework.Engine;
 import art.arcane.iris.engine.framework.IrisStructureLocator;
 import art.arcane.iris.engine.framework.structure.StructureGraphCatalog;
+import art.arcane.iris.engine.history.GenerationPackFingerprint;
+import art.arcane.iris.engine.history.GenerationRegistryContract;
+import art.arcane.iris.engine.history.GenerationRegistryContractFactory;
 import art.arcane.iris.core.structure.authoring.StructureRecoveryResult;
 import art.arcane.iris.core.structure.authoring.StructureTransactionWriter;
 import art.arcane.iris.engine.object.IrisBiome;
+import art.arcane.iris.engine.object.IrisBiomeCustom;
+import art.arcane.iris.spi.PlatformGenerationRegistry;
 import art.arcane.iris.engine.object.IrisBlockData;
 import art.arcane.iris.engine.object.IrisDimension;
 import art.arcane.iris.engine.object.IrisEntity;
@@ -74,6 +79,7 @@ import art.arcane.iris.util.common.scheduling.J;
 import art.arcane.iris.util.project.context.IrisContext;
 import lombok.AccessLevel;
 import lombok.Data;
+import lombok.EqualsAndHashCode;
 import lombok.Getter;
 import lombok.Setter;
 import org.jetbrains.annotations.Nullable;
@@ -87,7 +93,9 @@ import java.util.ArrayList;
 import java.util.HashSet;
 import java.util.Iterator;
 import java.util.LinkedList;
+import java.util.LinkedHashMap;
 import java.util.List;
+import java.util.Locale;
 import java.util.Map;
 import java.util.Objects;
 import java.util.Optional;
@@ -137,6 +145,17 @@ public class IrisData implements ExclusionStrategy, TypeAdapterFactory {
     @Getter(AccessLevel.NONE)
     @Setter(AccessLevel.NONE)
     private final transient List<Engine> engines = new ArrayList<>();
+    private final transient Map<IrisDimension, Map<String, String>> dimensionCustomBiomeResourceKeys =
+            Collections.synchronizedMap(new IdentityHashMap<>());
+    private transient volatile String generationPackFingerprint;
+    @Getter(AccessLevel.NONE)
+    @Setter(AccessLevel.NONE)
+    @EqualsAndHashCode.Exclude
+    private transient volatile GenerationRegistryContract generationRegistryContract;
+    @Getter(AccessLevel.NONE)
+    @Setter(AccessLevel.NONE)
+    @EqualsAndHashCode.Exclude
+    private transient volatile GenerationRegistryContractFactory.CustomBiomeResourceResolver customBiomeResourceResolver;
     private transient volatile Engine soleEngine;
 
     private IrisData(File dataFolder) {
@@ -170,6 +189,90 @@ public class IrisData implements ExclusionStrategy, TypeAdapterFactory {
         return Optional.ofNullable(dataLoaders.get(dataFolder));
     }
 
+    public String customBiomeResourceKey(IrisDimension dimension, IrisBiomeCustom customBiome) {
+        IrisDimension requiredDimension = Objects.requireNonNull(dimension, "dimension");
+        IrisBiomeCustom requiredBiome = Objects.requireNonNull(customBiome, "customBiome");
+        GenerationRegistryContractFactory.CustomBiomeResourceResolver resolver = customBiomeResourceResolver;
+        if (resolver != null) {
+            try {
+                return resolver.resolve(
+                        requiredDimension.getLoadKey(),
+                        requiredBiome
+                );
+            } catch (IOException failure) {
+                throw new IllegalStateException("Immutable Iris epoch has no registry mapping for custom biome '"
+                        + requiredDimension.getLoadKey() + ":" + requiredBiome.getId() + "'.", failure);
+            }
+        }
+        return GenerationRegistryContractFactory.customBiomeResourceKey(
+                requiredDimension.getLoadKey(),
+                requiredBiome,
+                getContentGate()
+        );
+    }
+
+    public String customBiomeResourceKey(IrisDimension dimension, String customBiomeId) {
+        IrisDimension requiredDimension = Objects.requireNonNull(dimension, "dimension");
+        String logicalKey = requiredDimension.getLoadKey().toLowerCase(Locale.ROOT)
+                + ":" + Objects.requireNonNull(customBiomeId, "customBiomeId").toLowerCase(Locale.ROOT);
+        String physicalKey = customBiomeResourceKeys(requiredDimension).get(logicalKey);
+        if (physicalKey == null) {
+            throw new IllegalArgumentException("Unknown custom biome '" + logicalKey + "'.");
+        }
+        return physicalKey;
+    }
+
+    public String physicalBiomeResourceKey(IrisDimension dimension, String resourceKey) {
+        if (resourceKey == null || resourceKey.isBlank()) {
+            return resourceKey;
+        }
+        String normalizedKey = resourceKey.trim().toLowerCase(Locale.ROOT);
+        if (!normalizedKey.contains(":")) {
+            normalizedKey = "minecraft:" + normalizedKey;
+        }
+        return customBiomeResourceKeys(Objects.requireNonNull(dimension, "dimension"))
+                .getOrDefault(normalizedKey, normalizedKey);
+    }
+
+    public String generationPackFingerprint() {
+        String fingerprint = generationPackFingerprint;
+        if (fingerprint != null) {
+            return fingerprint;
+        }
+        synchronized (this) {
+            fingerprint = generationPackFingerprint;
+            if (fingerprint != null) {
+                return fingerprint;
+            }
+            try {
+                fingerprint = GenerationPackFingerprint.compute(
+                        dataFolder.toPath(),
+                        GenerationPackFingerprint.CURRENT_VERSION
+                );
+            } catch (IOException failure) {
+                throw new IllegalStateException("Unable to fingerprint Iris generation pack at "
+                        + dataFolder + ".", failure);
+            }
+            generationPackFingerprint = fingerprint;
+            return fingerprint;
+        }
+    }
+
+    public synchronized void bindGenerationRegistryContract(GenerationRegistryContract contract) {
+        GenerationRegistryContract required = Objects.requireNonNull(contract, "contract");
+        if (generationRegistryContract != null && !generationRegistryContract.equals(required)) {
+            throw new IllegalStateException("Iris data is already bound to another generation registry contract.");
+        }
+        generationRegistryContract = required;
+        customBiomeResourceResolver = new GenerationRegistryContractFactory.CustomBiomeResourceResolver(
+                required,
+                PlatformGenerationRegistry::contentAddressedCustomBiomeResourceKey
+        );
+        synchronized (dimensionCustomBiomeResourceKeys) {
+            dimensionCustomBiomeResourceKeys.clear();
+        }
+    }
+
     public static boolean invalidateLoadedStructureResources(File dataFolder) {
         Path requested = dataFolderIdentity(Objects.requireNonNull(
                 dataFolder,
@@ -273,7 +376,7 @@ public class IrisData implements ExclusionStrategy, TypeAdapterFactory {
         try {
             if (nearest != null) {
                 T t = nearest.load(type, key, false);
-                if (t != null) {
+                if (t != null || nearest.generationRegistryContract != null) {
                     return t;
                 }
             }
@@ -516,6 +619,10 @@ public class IrisData implements ExclusionStrategy, TypeAdapterFactory {
         StructureGraphCatalog.invalidate(this);
         IrisObjectScale.invalidate(this);
         contentGate = null;
+        generationPackFingerprint = null;
+        synchronized (dimensionCustomBiomeResourceKeys) {
+            dimensionCustomBiomeResourceKeys.clear();
+        }
         compatReport.clear();
         closed = false;
         possibleSnippets = new KMap<>();
@@ -831,4 +938,34 @@ public class IrisData implements ExclusionStrategy, TypeAdapterFactory {
         }
         IrisLogging.debug("Loaded Prefetch Cache to reduce generation disk use.");
     }
+
+    private Map<String, String> customBiomeResourceKeys(IrisDimension dimension) {
+        synchronized (dimensionCustomBiomeResourceKeys) {
+            Map<String, String> cached = dimensionCustomBiomeResourceKeys.get(dimension);
+            if (cached != null) {
+                return cached;
+            }
+            String namespace = dimension.getLoadKey().toLowerCase(Locale.ROOT);
+            Map<String, String> resolved = new LinkedHashMap<>();
+            List<IrisBiome> registryBiomes = new ArrayList<>(dimension.getAllBiomes(() -> this));
+            registryBiomes.addAll(dimension.getReachableBiomes(() -> this));
+            for (IrisBiome biome : registryBiomes) {
+                if (biome == null || !biome.isCustom()) {
+                    continue;
+                }
+                for (IrisBiomeCustom customBiome : biome.getCustomDerivitives()) {
+                    if (customBiome == null || customBiome.getId() == null || customBiome.getId().isBlank()) {
+                        continue;
+                    }
+                    String logicalKey = namespace + ":" + customBiome.getId().toLowerCase(Locale.ROOT);
+                    String physicalKey = customBiomeResourceKey(dimension, customBiome);
+                    resolved.merge(logicalKey, physicalKey,
+                            (first, second) -> first.compareTo(second) <= 0 ? first : second);
+                }
+            }
+            Map<String, String> immutable = Map.copyOf(resolved);
+            dimensionCustomBiomeResourceKeys.put(dimension, immutable);
+            return immutable;
+        }
+    }
 }

core/src/main/java/art/arcane/iris/core/localization/BukkitRuntimeMessages.java

@@ -172,15 +172,13 @@ public final class BukkitRuntimeMessages {
                     + " (dimension blockFallbacks, block backup)."
     );
     public static final LinesKey COMMAND_DEVELOPER_UPDATE_WORLD_WARNING = LinesKey.of(
-            "iris.bukkit.runtime.commanddeveloper.update_world_warning",
-            C.RED + "You should always make a backup before using this",
-            C.YELLOW + "Issues caused by this can be, but are not limited to:",
-            C.YELLOW + " - Broken chunks (cut-offs) between old and new chunks (before & after the update)",
-            C.YELLOW + " - Regenerated chunks that do not fit in with the old chunks",
-            C.YELLOW + " - Structures not spawning again when regenerating",
-            C.YELLOW + " - Caves not lining up",
-            C.YELLOW + " - Terrain layers not lining up",
-            C.RED + "Now that you are aware of the risks, and have made a back-up:",
+            "iris.bukkit.runtime.commanddeveloper.stage_world_generation_update_warning",
+            C.RED + "Back up the complete world before staging this update.",
+            C.YELLOW + "Existing chunks will not be regenerated or rewritten.",
+            C.YELLOW + "New chunks use the staged pack after restart and blend across the frozen boundary.",
+            C.YELLOW + "The world seed, height, environment, and dimension type cannot change.",
+            C.YELLOW + "Every backup must retain the complete iris/generation directory.",
+            C.RED + "To stage the update and request a clean restart:",
             C.RED + "/iris developer update-world {world} {pack} confirm=true"
     );
     public static final TextKey BULK_STRUCTURE_IMPORTER_IMPORTING_VANILLA_DATAPACK_STRUCTURES_MODE_INCLUDENONJIGSAW = TextKey.of(

core/src/main/java/art/arcane/iris/core/localization/DirectorCommandMessages.java

@@ -60,9 +60,9 @@ public final class DirectorCommandMessages {
             "iris.director.commanddeveloper.param.center_chunk_z",
             "Center chunk Z"
     );
-    public static final TextKey COMMAND_DEVELOPER_DIRECTOR_UPDATE_PACK_WORLD_UNSAFE = TextKey.of(
-            "iris.director.commanddeveloper.director.update_pack_world_unsafe",
-            "Update the pack of a world (UNSAFE!)"
+    public static final TextKey COMMAND_DEVELOPER_DIRECTOR_STAGE_WORLD_GENERATION_UPDATE = TextKey.of(
+            "iris.director.commanddeveloper.director.stage_world_generation_update",
+            "Stage a world generation update"
     );
     public static final TextKey COMMAND_DEVELOPER_PARAM_WORLD_UPDATE = TextKey.of(
             "iris.director.commanddeveloper.param.world_update",
@@ -889,7 +889,7 @@ public final class DirectorCommandMessages {
             COMMAND_DEVELOPER_PARAM_RADIUS_CHUNKS_AROUND_CENTER,
             COMMAND_DEVELOPER_PARAM_CENTER_CHUNK_X,
             COMMAND_DEVELOPER_PARAM_CENTER_CHUNK_Z,
-            COMMAND_DEVELOPER_DIRECTOR_UPDATE_PACK_WORLD_UNSAFE,
+            COMMAND_DEVELOPER_DIRECTOR_STAGE_WORLD_GENERATION_UPDATE,
             COMMAND_DEVELOPER_PARAM_WORLD_UPDATE,
             COMMAND_DEVELOPER_PARAM_PACK_INSTALL_INTO_WORLD,
             COMMAND_DEVELOPER_PARAM_MAKE_SURE_MAKE_BACKUP_READ_WARNINGS_FIRST,

core/src/main/java/art/arcane/iris/core/nms/INMSBinding.java

@@ -31,6 +31,7 @@ import art.arcane.iris.engine.framework.Engine;
 import art.arcane.iris.engine.framework.NativeStructureVolume;
 import art.arcane.iris.engine.platform.PlatformChunkGenerator;
 import art.arcane.iris.spi.PlatformBlockState;
+import art.arcane.iris.spi.PlatformGenerationRegistry;
 import art.arcane.iris.spi.PlatformStructureHooks.JigsawSourceMetadata;
 import art.arcane.iris.util.project.hunk.Hunk;
 import art.arcane.volmlib.util.collection.KList;
@@ -57,9 +58,14 @@ import java.awt.Color;
 import java.util.List;
 import java.util.Set;
 import java.util.concurrent.CompletableFuture;
-import java.util.concurrent.TimeUnit;
 
 public interface INMSBinding {
+    default PlatformGenerationRegistry generationRegistry() {
+        throw new UnsupportedOperationException(
+                "The active NMS binding does not expose generation registry definitions."
+        );
+    }
+
     boolean hasTile(Material material);
 
     boolean hasTile(Location l);
@@ -273,8 +279,18 @@ public interface INMSBinding {
     default void uninjectBukkit() {
     }
 
-    default boolean awaitServerShutdownBoundary(long timeout, TimeUnit unit) {
-        return true;
+    default void deferPluginClassLoaderClose() {
+    }
+
+    default void releasePluginClassLoaderClose() {
+    }
+
+    default boolean isServerStopping() {
+        return false;
+    }
+
+    default ServerShutdownBoundary createServerShutdownBoundary() {
+        return new ServerShutdownBoundary(() -> true, Thread.currentThread());
     }
 
     KMap<Material, List<BlockProperty>> getBlockProperties();

core/src/main/java/art/arcane/iris/core/nms/ServerShutdownBoundary.java

@@ -7,33 +7,32 @@ import java.util.function.BooleanSupplier;
 public final class ServerShutdownBoundary {
     private static final long MAX_JOIN_SLICE_MILLIS = 1000L;
 
-    private ServerShutdownBoundary() {
+    private final BooleanSupplier boundaryReached;
+    private final Thread serverThread;
+
+    public ServerShutdownBoundary(BooleanSupplier boundaryReached, Thread serverThread) {
+        this.boundaryReached = Objects.requireNonNull(boundaryReached, "Server shutdown boundary");
+        this.serverThread = Objects.requireNonNull(serverThread, "Server thread");
+        this.boundaryReached.getAsBoolean();
     }
 
-    public static boolean await(
-            BooleanSupplier boundaryReached,
-            Thread serverThread,
-            long timeout,
-            TimeUnit unit
-    ) {
-        BooleanSupplier reached = Objects.requireNonNull(boundaryReached, "Server shutdown boundary");
-        Thread activeServerThread = Objects.requireNonNull(serverThread, "Server thread");
+    public boolean await(long timeout, TimeUnit unit) {
         TimeUnit activeUnit = Objects.requireNonNull(unit, "Server shutdown timeout unit");
-        if (reached.getAsBoolean()) {
+        if (boundaryReached.getAsBoolean()) {
             return true;
         }
-        if (activeServerThread == Thread.currentThread()) {
+        if (serverThread == Thread.currentThread()) {
             return false;
         }
 
         long timeoutNanos = Math.max(0L, activeUnit.toNanos(timeout));
         long started = System.nanoTime();
         boolean interrupted = false;
-        while (!reached.getAsBoolean()) {
+        while (!boundaryReached.getAsBoolean()) {
             long remaining = timeoutNanos - (System.nanoTime() - started);
-            if (remaining <= 0L || !activeServerThread.isAlive()) {
+            if (remaining <= 0L || !serverThread.isAlive()) {
                 restoreInterrupt(interrupted);
-                return reached.getAsBoolean();
+                return boundaryReached.getAsBoolean();
             }
 
             long joinMillis = Math.max(
@@ -41,7 +40,7 @@ public final class ServerShutdownBoundary {
                     Math.min(MAX_JOIN_SLICE_MILLIS, TimeUnit.NANOSECONDS.toMillis(remaining))
             );
             try {
-                activeServerThread.join(joinMillis);
+                serverThread.join(joinMillis);
             } catch (InterruptedException e) {
                 interrupted = true;
             }

core/src/main/java/art/arcane/iris/core/service/LogFilterSVC.java

@@ -7,6 +7,7 @@ import org.apache.logging.log4j.Marker;
 import org.apache.logging.log4j.core.Filter;
 import org.apache.logging.log4j.core.LogEvent;
 import org.apache.logging.log4j.core.Logger;
+import org.apache.logging.log4j.core.config.LoggerConfig;
 import org.apache.logging.log4j.message.Message;
 
 import java.util.List;
@@ -21,14 +22,15 @@ public class LogFilterSVC implements IrisService, Filter {
     // so a mutable static here was both a CME hazard and grew by three entries per enable.
     private static final List<String> FILTERS = List.of(HEIGHTMAP_MISMATCH, RAID_PERSISTENCE, DUPLICATE_ENTITY_UUID);
 
-    private boolean installed = false;
+    private LoggerConfig installedLogger;
 
     public void onEnable() {
-        if (installed) {
+        if (installedLogger != null) {
             return;
         }
-        ((Logger) LogManager.getRootLogger()).addFilter(this);
-        installed = true;
+        LoggerConfig logger = ((Logger) LogManager.getRootLogger()).get();
+        logger.addFilter(this);
+        installedLogger = logger;
     }
 
     public void initialize() {
@@ -41,11 +43,12 @@ public class LogFilterSVC implements IrisService, Filter {
     }
 
     public void onDisable() {
-        if (!installed) {
+        LoggerConfig logger = installedLogger;
+        if (logger == null) {
             return;
         }
-        ((Logger) LogManager.getRootLogger()).get().removeFilter(this);
-        installed = false;
+        logger.removeFilter(this);
+        installedLogger = null;
     }
 
     public boolean isStarted() {

core/src/main/java/art/arcane/iris/core/service/PreservationSVC.java

@@ -69,10 +69,27 @@ public class PreservationSVC implements IrisService, PreservationRegistry {
     public void dereference() {
         IrisData.dereference();
         threads.removeIf((i) -> !i.isAlive());
-        services.removeIf(ExecutorService::isShutdown);
+        services.removeIf(ExecutorService::isTerminated);
         updateCaches();
     }
 
+    public boolean hasActiveResources() {
+        if (dereferencer != null && dereferencer.isAlive()) {
+            return true;
+        }
+        for (Thread thread : threads) {
+            if (thread.isAlive()) {
+                return true;
+            }
+        }
+        for (ExecutorService executor : services) {
+            if (!executor.isTerminated()) {
+                return true;
+            }
+        }
+        return false;
+    }
+
     @Override
     public void onEnable() {
         /*

core/src/main/java/art/arcane/iris/core/service/StudioSVC.java

@@ -19,6 +19,7 @@
 package art.arcane.iris.core.service;
 
 import art.arcane.iris.spi.IrisLogging;
+import art.arcane.iris.spi.IrisPlatforms;
 import art.arcane.iris.spi.IrisServices;
 import art.arcane.iris.core.IrisSettings;
 import art.arcane.iris.core.IrisStartupValidation;
@@ -46,6 +47,14 @@ import art.arcane.iris.core.runtime.WorldDeletionQueue;
 import art.arcane.iris.core.runtime.jigsaw.JigsawStudioActivation;
 import art.arcane.iris.core.tools.IrisToolbelt;
 import art.arcane.iris.engine.data.cache.AtomicCache;
+import art.arcane.iris.engine.history.GenerationActivation;
+import art.arcane.iris.engine.history.GenerationEpoch;
+import art.arcane.iris.engine.history.GenerationEpochContractFactory;
+import art.arcane.iris.engine.history.GenerationHistory;
+import art.arcane.iris.engine.history.GenerationHistoryPaths;
+import art.arcane.iris.engine.history.GenerationPackFingerprint;
+import art.arcane.iris.engine.history.GenerationRegistryContract;
+import art.arcane.iris.engine.history.GenerationRegistryContractFactory;
 import art.arcane.iris.engine.object.IrisDimension;
 import art.arcane.iris.engine.platform.PlatformChunkGenerator;
 import art.arcane.iris.platform.bukkit.BukkitPlatform;
@@ -166,18 +175,197 @@ public class StudioSVC implements IrisService {
         queueStudioWorldDeletionOnStartup(worldNamesToDelete);
     }
 
-    public IrisDimension installIntoWorld(VolmitSender sender, IrisDimension dimension, File folder) {
-        return installIntoDirectory(sender, dimension, new File(folder, "iris/pack"), false);
+    public IrisDimension installIntoWorld(
+            VolmitSender sender,
+            IrisDimension dimension,
+            File dimensionRoot,
+            long worldSeed
+    ) {
+        return publishGenerationHistory(sender, dimension, dimensionRoot, worldSeed, false);
     }
 
-    public IrisDimension replaceIntoWorld(VolmitSender sender, IrisDimension dimension, File folder) {
-        return installIntoDirectory(sender, dimension, new File(folder, "iris/pack"), true);
+    public IrisDimension replaceIntoWorld(
+            VolmitSender sender,
+            IrisDimension dimension,
+            File dimensionRoot,
+            long worldSeed
+    ) {
+        return publishGenerationHistory(sender, dimension, dimensionRoot, worldSeed, true);
+    }
+
+    public IrisDimension installIntoTransientWorld(
+            VolmitSender sender,
+            IrisDimension dimension,
+            File dimensionRoot
+    ) {
+        return installIntoDirectory(sender, dimension, new File(dimensionRoot, "iris/pack"), false);
     }
 
     public IrisDimension replaceIntoPackDirectory(VolmitSender sender, IrisDimension dimension, File folder) {
         return installIntoDirectory(sender, dimension, folder, true);
     }
 
+    private IrisDimension publishGenerationHistory(
+            VolmitSender sender,
+            IrisDimension dimension,
+            File dimensionRoot,
+            long worldSeed,
+            boolean stageUpdate
+    ) {
+        if (J.isPrimaryThread()) {
+            sender.sendMessage(IrisLanguage.text(
+                    BukkitRuntimeMessages.STUDIO_S_V_C_PACK_COPY_REQUIRES_ASYNC_THREAD
+            ));
+            return null;
+        }
+        String dimensionKey = dimension.getLoadKey();
+        try {
+            Path source = resolveSafePackSource(dimension.getLoader().getDataFolder());
+            GenerationCandidate candidate = captureGenerationCandidate(source, dimensionKey);
+            Path root = Objects.requireNonNull(dimensionRoot, "dimensionRoot")
+                    .toPath()
+                    .toAbsolutePath()
+                    .normalize();
+            if (!stageUpdate && !Files.exists(root, LinkOption.NOFOLLOW_LINKS)) {
+                Path parent = Objects.requireNonNull(root.getParent(), "dimensionRoot parent");
+                Files.createDirectories(parent);
+                Files.createDirectory(root);
+            }
+            GenerationHistory history;
+            long previousActivationId = 0L;
+            boolean restartRequired = false;
+            if (stageUpdate) {
+                history = openOrAdoptGenerationHistory(root, dimensionKey, worldSeed);
+                previousActivationId = history.activeActivation().activationId();
+                GenerationActivation activation = history.stageUpdate(
+                        source,
+                        candidate.packFingerprint(),
+                        candidate.dimensionContract(),
+                        candidate.registryContract(),
+                        IrisSettings.get().getGenerator().getGenerationTransitionWidthBlocks()
+                );
+                restartRequired = activation.activationId() != previousActivationId;
+            } else {
+                history = GenerationHistory.create(
+                        root,
+                        source,
+                        candidate.packFingerprint(),
+                        worldSeed,
+                        candidate.dimensionContract(),
+                        candidate.registryContract()
+                );
+            }
+            Path installedPack = stageUpdate && history.pendingActivation().isPresent()
+                    ? history.packRoot(history.pendingActivation().orElseThrow().activationId())
+                    : history.activePackRoot();
+            IrisDimension installed = loadInstalledDimension(installedPack, dimensionKey);
+            if (restartRequired) {
+                ServerConfigurator.restart("An Iris generation epoch update is pending activation.");
+            }
+            return installed;
+        } catch (Throwable failure) {
+            IrisLogging.reportError("Failed to publish generation history for dimension '"
+                    + dimensionKey + "' into " + dimensionRoot.getPath(), failure);
+            sender.sendMessage(IrisLanguage.text(
+                    BukkitRuntimeMessages.STUDIO_S_V_C_PACK_INSTALL_FAILED,
+                    MessageArgument.untrusted("dimension", dimensionKey),
+                    MessageArgument.untrusted("error", errorDetail(failure))
+            ));
+            return null;
+        }
+    }
+
+    private static GenerationHistory openOrAdoptGenerationHistory(
+            Path dimensionRoot,
+            String dimensionKey,
+            long worldSeed
+    ) throws IOException {
+        Optional<GenerationHistory> current = GenerationHistory.openIfPresent(dimensionRoot, worldSeed);
+        if (current.isPresent()) {
+            return current.get();
+        }
+        Path legacyPack = GenerationHistoryPaths.forDimension(dimensionRoot).legacyPackRoot();
+        PackValidationResult validation = validatePublishedPack(legacyPack);
+        if (!validation.isLoadable()) {
+            throw new BrokenPackException(legacyPack.toString(), validation.getBlockingErrors());
+        }
+        GenerationCandidate legacy = captureGenerationCandidate(
+                legacyPack,
+                dimensionKey,
+                GenerationRegistryContractFactory.CustomBiomeAliasPolicy.RETAIN_LEGACY_ALIASES
+        );
+        return GenerationHistory.adoptLegacyPack(
+                dimensionRoot,
+                legacy.packFingerprint(),
+                worldSeed,
+                legacy.dimensionContract(),
+                legacy.registryContract()
+        );
+    }
+
+    private static GenerationCandidate captureGenerationCandidate(Path packRoot, String dimensionKey)
+            throws IOException {
+        return captureGenerationCandidate(
+                packRoot,
+                dimensionKey,
+                GenerationRegistryContractFactory.CustomBiomeAliasPolicy.CONTENT_ADDRESSED_ONLY
+        );
+    }
+
+    private static GenerationCandidate captureGenerationCandidate(
+            Path packRoot,
+            String dimensionKey,
+            GenerationRegistryContractFactory.CustomBiomeAliasPolicy aliasPolicy
+    ) throws IOException {
+        String fingerprint = GenerationPackFingerprint.compute(
+                packRoot,
+                GenerationPackFingerprint.CURRENT_VERSION
+        );
+        IrisData data = IrisData.openDatapackCompiler(packRoot.toFile());
+        try {
+            IrisDimension dimension = data.getDimensionLoader().load(dimensionKey, false);
+            if (dimension == null) {
+                throw new IOException("Generation pack does not contain a loadable dimension '"
+                        + dimensionKey + "'.");
+            }
+            String dimensionTypeKey = IrisPlatforms.get()
+                    .registries()
+                    .generationRegistry()
+                    .dimensionTypeResourceKey(
+                            data.getDataFolder().getName(),
+                            dimension.getLoadKey(),
+                            dimension.getDimensionTypeKey()
+                    );
+            GenerationEpoch.DimensionContract dimensionContract = GenerationEpochContractFactory.create(
+                    dimension,
+                    dimension.getLoadKey(),
+                    dimensionTypeKey
+            );
+            GenerationRegistryContract registryContract = GenerationRegistryContractFactory.create(
+                    data,
+                    dimension,
+                    fingerprint,
+                    aliasPolicy
+            );
+            return new GenerationCandidate(fingerprint, dimensionContract, registryContract);
+        } finally {
+            data.close();
+        }
+    }
+
+    private static IrisDimension loadInstalledDimension(Path packRoot, String dimensionKey) throws IOException {
+        PackValidationResult validation = validatePublishedPack(packRoot);
+        if (!validation.isLoadable()) {
+            throw new BrokenPackException(packRoot.toString(), validation.getBlockingErrors());
+        }
+        IrisDimension installed = IrisData.get(packRoot.toFile()).getDimensionLoader().load(dimensionKey, false);
+        if (installed == null) {
+            throw new IOException("Immutable generation pack does not contain dimension '"
+                    + dimensionKey + "'.");
+        }
+        return installed;
+    }
+
     private IrisDimension installIntoDirectory(
             VolmitSender sender,
             IrisDimension dimension,
@@ -1534,6 +1722,13 @@ public class StudioSVC implements IrisService {
         RESTART
     }
 
+    private record GenerationCandidate(
+            String packFingerprint,
+            GenerationEpoch.DimensionContract dimensionContract,
+            GenerationRegistryContract registryContract
+    ) {
+    }
+
     public IrisProject getActiveProject() {
         return activeProject;
     }

core/src/main/java/art/arcane/iris/core/tools/IrisCreator.java

@@ -263,8 +263,10 @@ public class IrisCreator {
             IrisDimension installedDimension = resolvedDimension;
             if (!studio() || benchmark) {
                 reportCreationProgress(creationReporter, 0.26D, "prepare_world_pack");
-                installedDimension = IrisServices.get(StudioSVC.class)
-                        .installIntoWorld(sender, resolvedDimension, dimensionRoot);
+                StudioSVC studioService = IrisServices.get(StudioSVC.class);
+                installedDimension = benchmark
+                        ? studioService.installIntoTransientWorld(sender, resolvedDimension, dimensionRoot)
+                        : studioService.installIntoWorld(sender, resolvedDimension, dimensionRoot, seed);
                 if (installedDimension == null) {
                     throw new IrisException("Failed to install dimension pack for " + dimension());
                 }

core/src/main/java/art/arcane/iris/core/tools/IrisToolbelt.java

@@ -28,6 +28,7 @@ import art.arcane.iris.core.IrisSettings;
 import art.arcane.iris.core.IrisWorldStorage;
 import art.arcane.iris.core.gui.PregeneratorJob;
 import art.arcane.iris.core.loader.IrisData;
+import art.arcane.iris.core.nms.INMS;
 import art.arcane.iris.core.pregenerator.PregenPerformanceProfile;
 import art.arcane.iris.core.pregenerator.PregenTask;
 import art.arcane.iris.core.pregenerator.PregeneratorMethod;
@@ -57,7 +58,6 @@ import org.jetbrains.annotations.ApiStatus;
 
 import java.io.File;
 import java.io.IOException;
-import java.lang.reflect.Method;
 import java.util.ArrayList;
 import java.util.HashMap;
 import java.util.List;
@@ -74,7 +74,6 @@ import art.arcane.volmlib.util.localization.MessageArgument;
 public class IrisToolbelt {
     @ApiStatus.Internal
     public static Map<String, Boolean> toolbeltConfiguration = new HashMap<>();
-    private static final Method BUKKIT_IS_STOPPING_METHOD = resolveBukkitIsStoppingMethod();
 
     /**
      * Finds an installed dimension or returns null.
@@ -582,26 +581,7 @@ public class IrisToolbelt {
     }
 
     public static boolean isServerStopping() {
-        Method method = BUKKIT_IS_STOPPING_METHOD;
-        if (method != null) {
-            try {
-                Object value = method.invoke(null);
-                if (value instanceof Boolean) {
-                    return (Boolean) value;
-                }
-            } catch (Throwable ignored) {
-            }
-        }
-
-        return !BukkitPlatform.hasPlugin() || !BukkitPlatform.plugin().isEnabled();
-    }
-
-    private static Method resolveBukkitIsStoppingMethod() {
-        try {
-            return Bukkit.class.getMethod("isStopping");
-        } catch (Throwable ignored) {
-            return null;
-        }
+        return INMS.isBound() && INMS.get().isServerStopping();
     }
 
     public static void beginWorldMaintenance(World world, String reason) {

core/src/main/java/art/arcane/iris/core/tools/IrisWorldCreator.java

@@ -23,6 +23,7 @@ import art.arcane.iris.core.WorldCreatorCompat;
 import art.arcane.iris.core.loader.IrisData;
 import art.arcane.iris.engine.object.IrisDimension;
 import art.arcane.iris.engine.object.IrisWorld;
+import art.arcane.iris.engine.history.GenerationHistory;
 import art.arcane.iris.engine.platform.BukkitChunkGenerator;
 import art.arcane.iris.platform.bukkit.BukkitEnvironment;
 import org.bukkit.NamespacedKey;
@@ -31,6 +32,7 @@ import org.bukkit.WorldCreator;
 import org.bukkit.generator.ChunkGenerator;
 
 import java.io.File;
+import java.io.IOException;
 
 public class IrisWorldCreator {
     private String name;
@@ -100,15 +102,42 @@ public class IrisWorldCreator {
                 .seed(seed)
                 .worldFolder(worldFolder)
                 .build();
-        ChunkGenerator g = new BukkitChunkGenerator(w, studio, studio
-                ? dim.getLoader().getDataFolder() :
-                new File(w.worldFolder(), "iris/pack"), dimensionName);
+        GenerationHistory generationHistory = persistent
+                ? requireGenerationHistory(w.worldFolder(), seed)
+                : null;
+        File packRoot = generationHistory != null
+                ? requireActivePack(generationHistory)
+                : studio
+                ? dim.getLoader().getDataFolder()
+                : new File(w.worldFolder(), "iris/pack");
+        ChunkGenerator g = new BukkitChunkGenerator(
+                w,
+                studio,
+                packRoot,
+                dimensionName,
+                generationHistory);
 
         return creator.environment(environment)
                 .generateStructures(true)
                 .generator(g).seed(seed);
     }
 
+    private static GenerationHistory requireGenerationHistory(File dimensionRoot, long seed) {
+        try {
+            return GenerationHistory.open(dimensionRoot.toPath(), seed);
+        } catch (IOException failure) {
+            throw new IllegalStateException("Iris generation history is unusable at " + dimensionRoot + ".", failure);
+        }
+    }
+
+    private static File requireActivePack(GenerationHistory history) {
+        try {
+            return history.activePackRoot().toFile();
+        } catch (IOException failure) {
+            throw new IllegalStateException("Iris active generation pack is unusable.", failure);
+        }
+    }
+
     private World.Environment findEnvironment() {
         IrisDimension dim = dimension == null ? IrisData.loadAnyDimension(dimensionName, null) : dimension;
         return BukkitEnvironment.from(dim == null ? null : dim.getEnvironment());

core/src/main/java/art/arcane/iris/engine/DimensionTerrainContext.java

@@ -121,10 +121,10 @@ public final class DimensionTerrainContext implements DataProvider {
                 engine.getDimension(),
                 engine.getData(),
                 engine.getHeight(),
-                natural ? complex.getNaturalHeightStream() : complex.getHeightStream(),
+                natural ? complex.getUnblendedNaturalHeightStream() : complex.getHeightStream(),
                 natural ? complex.getNaturalSlopeStream() : complex.getSlopeStream(),
                 fluidHeightStream,
-                natural ? complex.getNaturalTrueBiomeStream() : complex.getTrueBiomeStream(),
+                natural ? complex.getUnblendedNaturalTrueBiomeStream() : complex.getTrueBiomeStream(),
                 complex.getRegionStream(),
                 complex.getRockStream(),
                 fluidBlockSampler,

core/src/main/java/art/arcane/iris/engine/EngineHotloader.java

@@ -20,7 +20,7 @@ package art.arcane.iris.engine;
 
 import art.arcane.iris.core.loader.IrisData;
 import art.arcane.iris.core.protocol.IrisProtocolServer;
-import art.arcane.iris.engine.EngineRuntime.BiomeMaxes;
+import art.arcane.iris.engine.GenerationRuntime.BiomeMaxes;
 import art.arcane.iris.engine.EngineRuntimeBuilder.RuntimeAssembly;
 import art.arcane.iris.engine.IrisEngine.LifecycleState;
 import art.arcane.iris.engine.framework.EngineTarget;
@@ -53,32 +53,40 @@ final class EngineHotloader {
     void hotloadComplex() {
         synchronized (engine.lifecycleLock) {
             engine.requireRunning("rebuild the biome complex");
+            requireMutableGenerationRuntime("rebuild the biome complex");
             engine.awaitNativeStructureBootstrap("complex hotload");
             engine.lifecycleState = LifecycleState.HOTLOADING;
             EngineRuntime previous = engine.runtime;
+            GenerationRuntime previousGeneration = previous.generation();
             IrisComplex nextComplex = null;
             try {
                 engine.sealForTransition("complex hotload", false);
                 engine.prepareRuntimeHotload();
-                RuntimeAssembly assembly = new RuntimeAssembly(RuntimeAssembly.nextRuntimeId(), previous.target());
+                RuntimeAssembly assembly = new RuntimeAssembly(
+                        RuntimeAssembly.nextRuntimeId(),
+                        previousGeneration.target(),
+                        previousGeneration.mantleStorageDirectory(),
+                        previousGeneration.runtimeKernel(),
+                        previousGeneration.transitionPlan());
                 engine.runtimeAssembly.set(assembly);
                 EngineRuntime next;
                 try (IrisContext.Scope ignored = IrisContext.open(engine, engine.getGenerationSessions().currentSessionId(), null)) {
-                    assembly.complex = new IrisComplex(engine);
+                    assembly.complex = assembly.runtimeKernel.createComplex(engine, assembly.transitionPlan);
                     nextComplex = assembly.complex;
-                    assembly.dimensionStackContext = engine.runtimeBuilder.buildDimensionStackContext();
-                    assembly.upperContext = engine.runtimeBuilder.buildUpperContext();
+                    assembly.dimensionStackContext = assembly.runtimeKernel.createDimensionStackContext(engine);
+                    assembly.upperContext = assembly.runtimeKernel.createUpperContext(engine);
                     BiomeMaxes biomeMaxes = engine.runtimeBuilder.computeBiomeMaxes();
-                    next = previous.withComplex(
+                    GenerationRuntime nextGeneration = previousGeneration.withComplex(
                             assembly.cacheId,
                             assembly.complex,
                             assembly.upperContext,
                             assembly.dimensionStackContext,
                             biomeMaxes);
+                    next = previous.withGeneration(nextGeneration);
                 } finally {
                     engine.runtimeAssembly.remove();
                 }
-                Throwable retirementFailure = runCleanup(null, previous.complex()::close);
+                Throwable retirementFailure = runCleanup(null, previousGeneration.complex()::close);
                 if (retirementFailure != null) {
                     retirementFailure = runCleanup(retirementFailure, nextComplex::close);
                     nextComplex = null;
@@ -91,7 +99,7 @@ final class EngineHotloader {
                 engine.getClosing().set(false);
                 engine.backgroundTasks.openBackgroundTaskAdmission();
             } catch (Throwable e) {
-                if (nextComplex != null && nextComplex != previous.complex()) {
+                if (nextComplex != null && nextComplex != previousGeneration.complex()) {
                     Throwable cleanupFailure = runCleanup(null, nextComplex::close);
                     if (cleanupFailure != null) {
                         e.addSuppressed(cleanupFailure);
@@ -108,6 +116,7 @@ final class EngineHotloader {
     void hotloadSilently() {
         synchronized (engine.lifecycleLock) {
             engine.requireRunning("hotload");
+            requireMutableGenerationRuntime("hotload");
             engine.awaitNativeStructureBootstrap("hotload");
             engine.lifecycleState = LifecycleState.HOTLOADING;
             EngineRuntime previousRuntime = engine.runtime;
@@ -183,6 +192,13 @@ final class EngineHotloader {
         }
     }
 
+    private void requireMutableGenerationRuntime(String operation) {
+        if (engine.getGenerationHistoryRuntimeRouter().isPresent()) {
+            throw new IllegalStateException("Cannot " + operation
+                    + " while immutable Iris generation history is attached; stage a world update and restart instead.");
+        }
+    }
+
     /**
      * Never throws. It is called from the hotload failure handler, where a frame-cap
      * {@code IllegalStateException} out of the codec (a long pack key or exception message overruns

core/src/main/java/art/arcane/iris/engine/EngineRuntime.java

@@ -19,48 +19,26 @@
 package art.arcane.iris.engine;
 
 import art.arcane.iris.engine.framework.EngineEffects;
-import art.arcane.iris.engine.framework.EngineMode;
-import art.arcane.iris.engine.framework.EngineTarget;
 import art.arcane.iris.engine.framework.EngineWorldManager;
 
-import java.util.concurrent.CompletableFuture;
+import java.util.Objects;
 
 /**
  * Immutable snapshot of everything an {@link IrisEngine} publishes as a single unit.
  * Instances are built by {@link EngineRuntimeBuilder} and retired by {@link EngineShutdownSequence}.
  */
 record EngineRuntime(
-        int cacheId,
-        EngineTarget target,
-        IrisComplex complex,
-        UpperDimensionContext upperContext,
-        DimensionStackContext dimensionStackContext,
+        GenerationRuntime generation,
         EngineEffects effects,
-        EngineMode mode,
-        EngineWorldManager worldManager,
-        CompletableFuture<Long> hash32,
-        BiomeMaxes biomeMaxes
+        EngineWorldManager worldManager
 ) {
-    EngineRuntime withComplex(
-            int nextCacheId,
-            IrisComplex nextComplex,
-            UpperDimensionContext nextUpperContext,
-            DimensionStackContext nextDimensionStackContext,
-            BiomeMaxes nextBiomeMaxes
-    ) {
-        return new EngineRuntime(
-                nextCacheId,
-                target,
-                nextComplex,
-                nextUpperContext,
-                nextDimensionStackContext,
-                effects,
-                mode,
-                worldManager,
-                hash32,
-                nextBiomeMaxes);
+    EngineRuntime {
+        Objects.requireNonNull(generation, "generation runtime");
+        Objects.requireNonNull(effects, "engine effects");
+        Objects.requireNonNull(worldManager, "engine world manager");
     }
 
-    record BiomeMaxes(double objectDensity, double layerDensity, double decoratorDensity) {
+    EngineRuntime withGeneration(GenerationRuntime nextGeneration) {
+        return new EngineRuntime(nextGeneration, effects, worldManager);
     }
 }

core/src/main/java/art/arcane/iris/engine/EngineRuntimeBuilder.java

@@ -20,24 +20,22 @@ package art.arcane.iris.engine;
 
 import art.arcane.iris.core.loader.IrisData;
 import art.arcane.iris.core.loader.ResourceLoader;
-import art.arcane.iris.engine.EngineRuntime.BiomeMaxes;
+import art.arcane.iris.engine.GenerationRuntime.BiomeMaxes;
+import art.arcane.iris.engine.framework.SeedManager;
 import art.arcane.iris.engine.IrisEngine.LifecycleState;
-import art.arcane.iris.engine.actuator.IrisDimensionStackActuator;
 import art.arcane.iris.engine.framework.EngineEffects;
 import art.arcane.iris.engine.framework.EngineEffectsProvider;
 import art.arcane.iris.engine.framework.EngineMode;
 import art.arcane.iris.engine.framework.EngineTarget;
 import art.arcane.iris.engine.framework.EngineWorldManager;
 import art.arcane.iris.engine.framework.EngineWorldManagerProvider;
-import art.arcane.iris.engine.modifier.IrisCustomModifier;
+import art.arcane.iris.engine.mantle.EngineMantle;
+import art.arcane.iris.engine.history.TransitionGenerationPlan;
+import art.arcane.iris.engine.history.GenerationKernelRegistry;
 import art.arcane.iris.engine.object.IrisBiome;
 import art.arcane.iris.engine.object.IrisBiomePaletteLayer;
 import art.arcane.iris.engine.object.IrisDecorator;
-import art.arcane.iris.engine.object.IrisDimension;
-import art.arcane.iris.engine.object.IrisDimensionMode;
-import art.arcane.iris.engine.object.IrisDimensionModeType;
 import art.arcane.iris.engine.object.IrisObjectPlacement;
-import art.arcane.iris.engine.object.IrisStaticObjectLayer;
 import art.arcane.iris.spi.IrisLogging;
 import art.arcane.iris.spi.IrisServices;
 import art.arcane.iris.util.project.context.IrisContext;
@@ -45,6 +43,9 @@ import art.arcane.volmlib.util.io.IO;
 import art.arcane.volmlib.util.math.M;
 
 import java.io.File;
+import java.io.IOException;
+import java.nio.file.Path;
+import java.util.Objects;
 import java.util.concurrent.CompletableFuture;
 import java.util.concurrent.atomic.AtomicInteger;
 
@@ -64,22 +65,56 @@ final class EngineRuntimeBuilder {
     }
 
     EngineRuntime buildRuntime() {
-        return buildRuntime(engine.getTarget());
+        return buildRuntime(
+                engine.getTarget(),
+                engine.getInitialMantleStorageDirectory(),
+                engine.getInitialKernelVersion(),
+                engine.getInitialTransitionPlan(),
+                null);
     }
 
     EngineRuntime buildRuntime(EngineTarget runtimeTarget) {
-        RuntimeAssembly assembly = new RuntimeAssembly(RuntimeAssembly.nextRuntimeId(), runtimeTarget);
+        GenerationRuntime active = requireRuntime("hotload the engine runtime").generation();
+        return buildRuntime(
+                runtimeTarget,
+                active.mantleStorageDirectory(),
+                active.kernelVersion(),
+                active.transitionPlan(),
+                active.mantle());
+    }
+
+    private EngineRuntime buildRuntime(
+            EngineTarget runtimeTarget,
+            Path mantleStorageDirectory,
+            GenerationKernelRegistry.Version kernelVersion,
+            TransitionGenerationPlan transitionPlan,
+            EngineMantle transferredMantle
+    ) {
+        RuntimeAssembly assembly = new RuntimeAssembly(
+                RuntimeAssembly.nextRuntimeId(),
+                runtimeTarget,
+                mantleStorageDirectory,
+                selectRuntimeKernel(kernelVersion),
+                transitionPlan);
         engine.runtimeAssembly.set(assembly);
         try (IrisContext.Scope ignored = IrisContext.open(engine, engine.getGenerationSessions().currentSessionId(), null)) {
             IrisLogging.debug("Setup Engine " + assembly.cacheId);
             long started = M.ms();
-            assembly.complex = new IrisComplex(engine);
+            if (transferredMantle == null) {
+                assembly.mantle = assembly.runtimeKernel.createMantle(engine, assembly.mantleStorageDirectory);
+                assembly.ownsMantle = true;
+            } else {
+                assembly.mantle = transferredMantle;
+            }
+            IrisLogging.debug("[IrisEngine timing] new IrisEngineMantle=" + (M.ms() - started) + "ms");
+            started = M.ms();
+            assembly.complex = assembly.runtimeKernel.createComplex(engine, assembly.transitionPlan);
             IrisLogging.debug("[IrisEngine timing] complex=" + (M.ms() - started) + "ms");
             started = M.ms();
-            assembly.dimensionStackContext = buildDimensionStackContext();
+            assembly.dimensionStackContext = assembly.runtimeKernel.createDimensionStackContext(engine);
             IrisLogging.debug("[IrisEngine timing] buildDimensionStackContext=" + (M.ms() - started) + "ms");
             started = M.ms();
-            assembly.upperContext = buildUpperContext();
+            assembly.upperContext = assembly.runtimeKernel.createUpperContext(engine);
             IrisLogging.debug("[IrisEngine timing] buildUpperContext=" + (M.ms() - started) + "ms");
             started = M.ms();
             assembly.effects = IrisServices.get(EngineEffectsProvider.class).create(engine);
@@ -89,21 +124,16 @@ final class EngineRuntimeBuilder {
             IrisLogging.debug("[IrisEngine timing] EngineEffects=" + (M.ms() - started) + "ms");
             assembly.hash32 = new CompletableFuture<>();
             started = M.ms();
-            engine.getMantle().hotload();
+            assembly.mantle.hotload();
             IrisLogging.debug("[IrisEngine timing] mantle.hotload=" + (M.ms() - started) + "ms");
             started = M.ms();
-            assembly.mode = createMode();
-            IrisStaticObjectLayer staticObjects = engine.getDimension().getStaticObjectLayer(engine.getData());
-            assembly.mode.registerStage((x, z, blocks, biomes, multicore, context) ->
-                    staticObjects.apply(engine, x, z, blocks));
-            if (assembly.dimensionStackContext != null) {
-                IrisDimensionStackActuator dimensionStack = new IrisDimensionStackActuator(engine);
-                assembly.mode.registerStage((x, z, blocks, biomes, multicore, context) ->
-                        dimensionStack.actuate(x, z, blocks, multicore, context));
-                IrisCustomModifier stackCustom = new IrisCustomModifier(engine);
-                assembly.mode.registerStage((x, z, blocks, biomes, multicore, context) ->
-                        stackCustom.modify(x, z, blocks, multicore, context));
-            }
+            assembly.mode = assembly.runtimeKernel.createMode(engine);
+            assembly.runtimeKernel.registerStaticObjects(engine, assembly.mode);
+            assembly.runtimeKernel.registerDimensionStack(
+                    engine,
+                    assembly.mode,
+                    assembly.dimensionStackContext
+            );
             IrisLogging.debug("[IrisEngine timing] setupMode=" + (M.ms() - started) + "ms");
             started = M.ms();
             assembly.worldManager = IrisServices.get(EngineWorldManagerProvider.class).create(engine);
@@ -112,7 +142,7 @@ final class EngineRuntimeBuilder {
             }
             IrisLogging.debug("[IrisEngine timing] IrisWorldManager=" + (M.ms() - started) + "ms");
             BiomeMaxes biomeMaxes = computeBiomeMaxes();
-            return assembly.freeze(biomeMaxes);
+            return assembly.freezeRuntime(biomeMaxes);
         } catch (Throwable e) {
             Throwable cleanupFailure = engine.shutdownSequence.closeAssembly(assembly, e);
             if (cleanupFailure != e) {
@@ -124,8 +154,60 @@ final class EngineRuntimeBuilder {
         }
     }
 
+    GenerationRuntime buildDetachedGenerationRuntime(EngineTarget runtimeTarget, Path mantleStorageDirectory) {
+        return buildDetachedGenerationRuntime(
+                runtimeTarget,
+                mantleStorageDirectory,
+                GenerationKernelRegistry.standard().current(),
+                null);
+    }
+
+    GenerationRuntime buildDetachedGenerationRuntime(
+            EngineTarget runtimeTarget,
+            Path mantleStorageDirectory,
+            GenerationKernelRegistry.Version kernelVersion,
+            TransitionGenerationPlan transitionPlan
+    ) {
+        RuntimeAssembly assembly = new RuntimeAssembly(
+                RuntimeAssembly.nextRuntimeId(),
+                runtimeTarget,
+                mantleStorageDirectory,
+                selectRuntimeKernel(kernelVersion),
+                transitionPlan);
+        engine.runtimeAssembly.set(assembly);
+        try (IrisContext.Scope ignored = IrisContext.open(engine, engine.getGenerationSessions().currentSessionId(), null)) {
+            IrisLogging.debug("Setup Detached Generation Runtime " + assembly.cacheId);
+            assembly.mantle = assembly.runtimeKernel.createMantle(engine, assembly.mantleStorageDirectory);
+            assembly.ownsMantle = true;
+            assembly.complex = assembly.runtimeKernel.createComplex(engine, assembly.transitionPlan);
+            assembly.dimensionStackContext = assembly.runtimeKernel.createDimensionStackContext(engine);
+            assembly.upperContext = assembly.runtimeKernel.createUpperContext(engine);
+            assembly.hash32 = CompletableFuture.completedFuture(computePackHash(runtimeTarget.getData()));
+            assembly.mantle.hotload();
+            assembly.mode = assembly.runtimeKernel.createMode(engine);
+            assembly.runtimeKernel.registerStaticObjects(engine, assembly.mode);
+            assembly.runtimeKernel.registerDimensionStack(
+                    engine,
+                    assembly.mode,
+                    assembly.dimensionStackContext
+            );
+            return assembly.freezeGeneration(computeBiomeMaxes());
+        } catch (Throwable e) {
+            Throwable cleanupFailure = engine.shutdownSequence.closeAssembly(assembly, e);
+            if (cleanupFailure != e) {
+                e.addSuppressed(cleanupFailure);
+            }
+            throw new IllegalStateException("Failed to build a detached Iris generation runtime.", e);
+        } finally {
+            engine.runtimeAssembly.remove();
+        }
+    }
+
     void publishRuntime(EngineRuntime next, EngineRuntime previous) {
-        Throwable retirementFailure = engine.shutdownSequence.closeRuntime(previous, null);
+        Throwable retirementFailure = engine.shutdownSequence.closeRuntime(
+                previous,
+                next.generation().mantle(),
+                null);
         if (retirementFailure != null) {
             retirementFailure = engine.shutdownSequence.closeRuntime(next, retirementFailure);
             engine.lifecycleState = LifecycleState.FAILED;
@@ -136,7 +218,7 @@ final class EngineRuntimeBuilder {
         }
 
         engine.runtime = next;
-        engine.publishedTarget = next.target();
+        engine.publishedTarget = next.generation().target();
         engine.getGenerationSessions().activateNextSession();
         engine.lifecycleState = LifecycleState.RUNNING;
         engine.getClosing().set(false);
@@ -163,33 +245,11 @@ final class EngineRuntimeBuilder {
             throw new IllegalStateException("Failed to start the Iris world manager.", e);
         }
         scheduleRuntimeTasks(next);
-        IrisLogging.debug("Engine Setup Complete " + next.cacheId());
+        IrisLogging.debug("Engine Setup Complete " + next.generation().cacheId());
     }
 
     private void scheduleRuntimeTasks(EngineRuntime engineRuntime) {
-        try {
-            if (!engine.backgroundTasks.scheduleTrackedTask(() -> {
-                try {
-                    File[] roots = engine.getData().getLoaders()
-                            .values()
-                            .stream()
-                            .map(ResourceLoader::getFolderName)
-                            .map(name -> new File(engine.getData().getDataFolder(), name))
-                            .filter(File::exists)
-                            .filter(File::isDirectory)
-                            .toArray(File[]::new);
-                    engineRuntime.hash32().complete(IO.hashRecursiveMeta(roots));
-                } catch (Throwable e) {
-                    engineRuntime.hash32().completeExceptionally(e);
-                    throw propagate(e);
-                }
-            })) {
-                throw new IllegalStateException("Iris background task admission closed before pack hashing.");
-            }
-        } catch (Throwable e) {
-            engineRuntime.hash32().completeExceptionally(e);
-            IrisLogging.reportError(e);
-        }
+        schedulePackHash(engineRuntime.generation());
         try {
             if (!engine.backgroundTasks.scheduleTrackedTask(() -> engine.getPlatformHooks().refreshDatapackWorkspace(engine))) {
                 throw new IllegalStateException("Iris background task admission closed before datapack workspace refresh.");
@@ -199,71 +259,34 @@ final class EngineRuntimeBuilder {
         }
     }
 
-    UpperDimensionContext buildUpperContext() {
-        IrisDimension dim = engine.getDimension();
-        if (!dim.hasUpperDimension()) {
-            return null;
-        }
-        String upperKey = dim.getUpperDimension();
-        IrisDimension upperDim = upperKey.equals(dim.getLoadKey())
-                ? dim
-                : IrisData.loadAnyDimension(upperKey, engine.getData());
-        if (upperDim != null) {
-            UpperDimensionContext ctx = UpperDimensionContext.create(engine, upperDim);
-            IrisLogging.info("Upper dimension enabled: " + upperKey
-                    + (ctx.isSelfReferencing() ? " (self-referencing)" : " (cross-referencing)"));
-            return ctx;
-        }
-        IrisLogging.warn("Upper dimension '" + upperKey + "' could not be resolved, skipping upper terrain.");
-        return null;
-    }
-
-    DimensionStackContext buildDimensionStackContext() {
-        IrisDimension dimension = engine.getDimension();
-        if (!dimension.hasDimensionStack()) {
-            return null;
-        }
-        if (dimension.hasUpperDimension()) {
-            throw new IllegalStateException("Dimension '" + dimension.getLoadKey()
-                    + "' cannot enable both dimensionStack and upperDimension.");
-        }
-        DimensionStackContext context = DimensionStackContext.create(engine, dimension.getDimensionStack());
-        IrisLogging.info("Dimension stack enabled: "
-                + String.join(" -> ", dimension.getDimensionStack().getDimensions()));
-        return context;
-    }
-
-    private EngineMode createMode() {
-        Throwable configuredFailure = null;
+    private void schedulePackHash(GenerationRuntime generationRuntime) {
         try {
-            IrisDimensionMode configuredMode = engine.getDimension().getMode();
-            if (configuredMode == null) {
-                configuredMode = new IrisDimensionMode();
-                engine.getDimension().setMode(configuredMode);
+            if (!engine.backgroundTasks.scheduleTrackedTask(() -> {
+                try {
+                    generationRuntime.hash32().complete(computePackHash(generationRuntime.data()));
+                } catch (Throwable e) {
+                    generationRuntime.hash32().completeExceptionally(e);
+                    throw propagate(e);
+                }
+            })) {
+                throw new IllegalStateException("Iris background task admission closed before pack hashing.");
             }
-            EngineMode configured = configuredMode.create(engine);
-            if (configured == null) {
-                throw new IllegalStateException("Dimension mode factory returned null");
-            }
-            return configured;
         } catch (Throwable e) {
-            configuredFailure = e;
+            generationRuntime.hash32().completeExceptionally(e);
             IrisLogging.reportError(e);
-            if (engine.getModeFallbackLogged().compareAndSet(false, true)) {
-                IrisLogging.warn("Failed to initialize configured dimension mode for " + engine.getDimension().getLoadKey() + ", falling back to OVERWORLD mode.");
-            }
         }
+    }
 
-        try {
-            EngineMode fallback = IrisDimensionModeType.OVERWORLD.create(engine);
-            if (fallback == null) {
-                throw new IllegalStateException("OVERWORLD mode factory returned null");
-            }
-            return fallback;
-        } catch (Throwable fallbackFailure) {
-            fallbackFailure.addSuppressed(configuredFailure);
-            throw new IllegalStateException("Both configured and fallback Iris engine modes failed.", fallbackFailure);
-        }
+    private long computePackHash(IrisData data) {
+        File[] roots = data.getLoaders()
+                .values()
+                .stream()
+                .map(ResourceLoader::getFolderName)
+                .map(name -> new File(data.getDataFolder(), name))
+                .filter(File::exists)
+                .filter(File::isDirectory)
+                .toArray(File[]::new);
+        return IO.hashRecursiveMeta(roots);
     }
 
     BiomeMaxes computeBiomeMaxes() {
@@ -317,11 +340,27 @@ final class EngineRuntimeBuilder {
         return current;
     }
 
+    static GenerationKernelRegistry.RuntimeKernel selectRuntimeKernel(
+            GenerationKernelRegistry.Version version
+    ) {
+        try {
+            return GenerationKernelRegistry.standard().select(version);
+        } catch (IOException failure) {
+            throw new IllegalArgumentException("Unsupported executable Iris generation kernel "
+                    + version + ".", failure);
+        }
+    }
+
     static final class RuntimeAssembly {
         private static final AtomicInteger RUNTIME_IDS = new AtomicInteger();
 
         final int cacheId;
         final EngineTarget target;
+        final Path mantleStorageDirectory;
+        final GenerationKernelRegistry.Version kernelVersion;
+        final GenerationKernelRegistry.RuntimeKernel runtimeKernel;
+        final SeedManager seedManager;
+        final TransitionGenerationPlan transitionPlan;
 
         static int nextRuntimeId() {
             return RUNTIME_IDS.incrementAndGet();
@@ -331,29 +370,76 @@ final class EngineRuntimeBuilder {
         DimensionStackContext dimensionStackContext;
         EngineEffects effects;
         EngineMode mode;
+        EngineMantle mantle;
         EngineWorldManager worldManager;
         CompletableFuture<Long> hash32;
+        boolean ownsMantle;
 
         RuntimeAssembly(int cacheId, EngineTarget target) {
-            this.cacheId = cacheId;
-            this.target = target;
-        }
-
-        EngineRuntime freeze(BiomeMaxes biomeMaxes) {
-            if (complex == null || effects == null || mode == null || worldManager == null || hash32 == null) {
-                throw new IllegalStateException("Cannot publish an incomplete Iris engine runtime.");
-            }
-            return new EngineRuntime(
+            this(
                     cacheId,
                     target,
+                    null,
+                    selectRuntimeKernel(GenerationKernelRegistry.standard().current()),
+                    null);
+        }
+
+        RuntimeAssembly(int cacheId, EngineTarget target, Path mantleStorageDirectory) {
+            this(
+                    cacheId,
+                    target,
+                    mantleStorageDirectory,
+                    selectRuntimeKernel(GenerationKernelRegistry.standard().current()),
+                    null);
+        }
+
+        RuntimeAssembly(
+                int cacheId,
+                EngineTarget target,
+                Path mantleStorageDirectory,
+                GenerationKernelRegistry.RuntimeKernel runtimeKernel,
+                TransitionGenerationPlan transitionPlan
+        ) {
+            this.cacheId = cacheId;
+            this.target = target;
+            this.mantleStorageDirectory = mantleStorageDirectory == null
+                    ? null
+                    : IrisEngineMantle.normalizeStorageDirectory(mantleStorageDirectory);
+            this.runtimeKernel = Objects.requireNonNull(runtimeKernel, "executable generation kernel");
+            this.seedManager = this.runtimeKernel.createSeedManager(target.getWorld().getRawWorldSeed());
+            this.kernelVersion = this.runtimeKernel.version();
+            this.transitionPlan = transitionPlan;
+        }
+
+        GenerationRuntime freezeGeneration(BiomeMaxes biomeMaxes) {
+            if (complex == null || mode == null || mantle == null || mantleStorageDirectory == null || hash32 == null) {
+                throw new IllegalStateException("Cannot publish an incomplete Iris generation runtime.");
+            }
+            return new GenerationRuntime(
+                    cacheId,
+                    target,
+                    target.getData(),
+                    target.getDimension(),
+                    kernelVersion,
+                    runtimeKernel,
+                    seedManager,
+                    transitionPlan,
                     complex,
                     upperContext,
                     dimensionStackContext,
-                    effects,
                     mode,
-                    worldManager,
+                    mantle,
+                    mantleStorageDirectory,
                     hash32,
                     biomeMaxes);
         }
+
+        EngineRuntime freezeRuntime(BiomeMaxes biomeMaxes) {
+            if (effects == null || worldManager == null) {
+                throw new IllegalStateException("Cannot publish an incomplete Iris engine runtime.");
+            }
+            return new EngineRuntime(freezeGeneration(biomeMaxes), effects, worldManager);
+        }
+
     }
 }

core/src/main/java/art/arcane/iris/engine/EngineShutdownSequence.java

@@ -22,8 +22,10 @@ import art.arcane.iris.engine.EngineBackgroundTasks.BackgroundTaskDrain;
 import art.arcane.iris.engine.EngineRuntimeBuilder.RuntimeAssembly;
 import art.arcane.iris.engine.IrisEngine.LifecycleState;
 import art.arcane.iris.engine.framework.GenerationSessionException;
+import art.arcane.iris.engine.framework.EngineTarget;
 import art.arcane.iris.engine.framework.NativeStructureOwnershipStore;
 import art.arcane.iris.engine.framework.PreservationRegistry;
+import art.arcane.iris.engine.mantle.EngineMantle;
 import art.arcane.iris.spi.IrisLogging;
 import art.arcane.iris.spi.IrisServices;
 
@@ -38,7 +40,6 @@ final class EngineShutdownSequence {
     private final IrisEngine engine;
     private boolean runtimeReleased;
     private boolean targetReleased;
-    private boolean mantleReleased;
     private boolean engineDataReleased;
     private boolean preservationReleased;
 
@@ -47,6 +48,17 @@ final class EngineShutdownSequence {
     }
 
     void close() {
+        if (!engine.beginShutdown()) {
+            return;
+        }
+        Throwable routerFailure = runCleanup(null, engine::closeAttachedGenerationHistoryRuntimeRouter);
+        if (routerFailure != null) {
+            synchronized (engine.lifecycleLock) {
+                engine.lifecycleState = LifecycleState.FAILED;
+            }
+            reportIncompleteClose(routerFailure);
+            return;
+        }
         Throwable failure;
         synchronized (engine.lifecycleLock) {
             if (engine.closed) {
@@ -122,14 +134,10 @@ final class EngineShutdownSequence {
                     if (runtimeReleased) {
                         failure = releaseTarget(failure);
                     }
-                    if (targetReleased) {
-                        failure = releaseMantle(failure);
-                    }
                     if (prefetchFailure == null
                             && engineDataFailure == null
                             && runtimeReleased
-                            && targetReleased
-                            && mantleReleased) {
+                            && targetReleased) {
                         failure = releaseEngineDataForShutdown(failure);
                     }
                     if (engineDataReleased) {
@@ -140,7 +148,6 @@ final class EngineShutdownSequence {
             if (failure == null
                     && runtimeReleased
                     && targetReleased
-                    && mantleReleased
                     && engineDataReleased
                     && preservationReleased) {
                 engine.closed = true;
@@ -185,10 +192,10 @@ final class EngineShutdownSequence {
                 () -> NativeStructureOwnershipStore.close(engine));
         cleanupFailure = appendFailure(cleanupFailure, ownershipFailure);
         if (ownershipFailure == null) {
+            cleanupFailure = closeDetachedGenerationRuntimes(cleanupFailure);
             cleanupFailure = closeRuntime(engine.runtime, cleanupFailure);
             engine.runtime = null;
-            cleanupFailure = runCleanup(cleanupFailure, engine.getTarget()::close);
-            cleanupFailure = runCleanup(cleanupFailure, engine.getMantle()::close);
+            cleanupFailure = runCleanup(cleanupFailure, engine.publishedTarget::close);
             cleanupFailure = runCleanup(cleanupFailure, engine.engineDataStore::releaseEngineData);
             engine.closed = true;
             cleanupFailure = runCleanup(cleanupFailure, () -> {
@@ -232,18 +239,69 @@ final class EngineShutdownSequence {
                 assembly.hash32.cancel(true);
             }
         });
+        if (assembly.mantle != null && assembly.ownsMantle) {
+            assembly.ownsMantle = false;
+            failure = runCleanup(failure, assembly.mantle::saveAllNow);
+            failure = runCleanup(failure, assembly.mantle::close);
+        }
         return failure;
     }
 
     Throwable closeRuntime(EngineRuntime engineRuntime, Throwable failure) {
+        return closeRuntime(engineRuntime, null, failure);
+    }
+
+    Throwable closeRuntime(
+            EngineRuntime engineRuntime,
+            EngineMantle retainedMantle,
+            Throwable failure
+    ) {
         if (engineRuntime == null) {
             return failure;
         }
         failure = runCleanup(failure, engineRuntime.worldManager()::close);
         failure = runCleanup(failure, engineRuntime.effects()::close);
-        failure = runCleanup(failure, engineRuntime.mode()::close);
-        failure = runCleanup(failure, engineRuntime.complex()::close);
-        failure = runCleanup(failure, () -> engineRuntime.hash32().cancel(true));
+        return closeGenerationRuntime(engineRuntime.generation(), retainedMantle, failure);
+    }
+
+    Throwable closeGenerationRuntime(GenerationRuntime generationRuntime, Throwable failure) {
+        return closeGenerationRuntime(generationRuntime, null, failure);
+    }
+
+    Throwable closeGenerationRuntime(
+            GenerationRuntime generationRuntime,
+            EngineMantle retainedMantle,
+            Throwable failure
+    ) {
+        if (generationRuntime == null) {
+            return failure;
+        }
+        failure = runCleanup(failure, generationRuntime.mode()::close);
+        failure = runCleanup(failure, generationRuntime.complex()::close);
+        failure = runCleanup(failure, () -> generationRuntime.hash32().cancel(true));
+        if (generationRuntime.mantle() != retainedMantle) {
+            failure = runCleanup(failure, generationRuntime.mantle()::saveAllNow);
+            failure = runCleanup(failure, generationRuntime.mantle()::close);
+        }
+        return failure;
+    }
+
+    Throwable closeDetachedGenerationRuntime(GenerationRuntime generationRuntime, Throwable failure) {
+        IrisEngine.GenerationRuntimeBinding binding = new IrisEngine.GenerationRuntimeBinding(
+                engine,
+                generationRuntime);
+        try (IrisEngine.GenerationRuntimeScope ignored = engine.generationRuntimeScopes.open(binding)) {
+            failure = closeGenerationRuntime(generationRuntime, failure);
+        } catch (Throwable scopeFailure) {
+            failure = appendFailure(failure, scopeFailure);
+        }
+        return closeDetachedTarget(generationRuntime.target(), failure);
+    }
+
+    Throwable closeDetachedTarget(EngineTarget target, Throwable failure) {
+        failure = runCleanup(failure, () -> target.getData().unregisterEngine(engine));
+        failure = runCleanup(failure, target::close);
+        failure = runCleanup(failure, target.getData()::close);
         return failure;
     }
 
@@ -251,6 +309,10 @@ final class EngineShutdownSequence {
         if (runtimeReleased) {
             return failure;
         }
+        Throwable detachedFailure = closeDetachedGenerationRuntimes(null);
+        if (detachedFailure != null) {
+            return appendFailure(failure, detachedFailure);
+        }
         Throwable runtimeFailure = closeRuntime(engine.runtime, null);
         if (runtimeFailure != null) {
             return appendFailure(failure, runtimeFailure);
@@ -260,11 +322,23 @@ final class EngineShutdownSequence {
         return failure;
     }
 
+    private Throwable closeDetachedGenerationRuntimes(Throwable failure) {
+        GenerationRuntime[] detachedRuntimes = engine.detachedGenerationRuntimes.toArray(new GenerationRuntime[0]);
+        for (GenerationRuntime detached : detachedRuntimes) {
+            Throwable detachedFailure = closeDetachedGenerationRuntime(detached, null);
+            failure = appendFailure(failure, detachedFailure);
+            if (detachedFailure == null) {
+                engine.detachedGenerationRuntimes.remove(detached);
+            }
+        }
+        return failure;
+    }
+
     private Throwable releaseTarget(Throwable failure) {
         if (targetReleased) {
             return failure;
         }
-        Throwable targetFailure = runCleanup(null, engine.getTarget()::close);
+        Throwable targetFailure = runCleanup(null, engine.publishedTarget::close);
         if (targetFailure != null) {
             return appendFailure(failure, targetFailure);
         }
@@ -272,18 +346,6 @@ final class EngineShutdownSequence {
         return failure;
     }
 
-    private Throwable releaseMantle(Throwable failure) {
-        if (mantleReleased) {
-            return failure;
-        }
-        Throwable mantleFailure = runCleanup(null, engine.getMantle()::close);
-        if (mantleFailure != null) {
-            return appendFailure(failure, mantleFailure);
-        }
-        mantleReleased = true;
-        return failure;
-    }
-
     private Throwable releaseEngineDataForShutdown(Throwable failure) {
         if (engineDataReleased) {
             return failure;

core/src/main/java/art/arcane/iris/engine/GenerationRuntime.java

@@ -0,0 +1,101 @@
+/*
+ * Iris is a World Generator for Minecraft Bukkit Servers
+ * Copyright (c) 2022 Arcane Arts (Volmit Software)
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program.  If not, see <https://www.gnu.org/licenses/>.
+ */
+
+package art.arcane.iris.engine;
+
+import art.arcane.iris.core.loader.IrisData;
+import art.arcane.iris.engine.framework.EngineMode;
+import art.arcane.iris.engine.framework.EngineTarget;
+import art.arcane.iris.engine.framework.SeedManager;
+import art.arcane.iris.engine.history.TransitionGenerationPlan;
+import art.arcane.iris.engine.history.GenerationKernelRegistry;
+import art.arcane.iris.engine.mantle.EngineMantle;
+import art.arcane.iris.engine.object.IrisDimension;
+
+import java.nio.file.Path;
+import java.util.Objects;
+import java.util.concurrent.CompletableFuture;
+
+record GenerationRuntime(
+        int cacheId,
+        EngineTarget target,
+        IrisData data,
+        IrisDimension dimension,
+        GenerationKernelRegistry.Version kernelVersion,
+        GenerationKernelRegistry.RuntimeKernel runtimeKernel,
+        SeedManager seedManager,
+        TransitionGenerationPlan transitionPlan,
+        IrisComplex complex,
+        UpperDimensionContext upperContext,
+        DimensionStackContext dimensionStackContext,
+        EngineMode mode,
+        EngineMantle mantle,
+        Path mantleStorageDirectory,
+        CompletableFuture<Long> hash32,
+        BiomeMaxes biomeMaxes
+) {
+    GenerationRuntime {
+        Objects.requireNonNull(target, "generation target");
+        Objects.requireNonNull(data, "generation data");
+        Objects.requireNonNull(dimension, "generation dimension");
+        Objects.requireNonNull(kernelVersion, "generation kernel version");
+        Objects.requireNonNull(runtimeKernel, "executable generation kernel");
+        Objects.requireNonNull(seedManager, "generation seed manager");
+        if (!kernelVersion.equals(runtimeKernel.version())) {
+            throw new IllegalArgumentException("Generation kernel version does not match its executable runtime.");
+        }
+        Objects.requireNonNull(complex, "generation complex");
+        Objects.requireNonNull(mode, "generation mode");
+        Objects.requireNonNull(mantle, "generation mantle");
+        mantleStorageDirectory = IrisEngineMantle.normalizeStorageDirectory(mantleStorageDirectory);
+        Objects.requireNonNull(hash32, "generation pack hash");
+        Objects.requireNonNull(biomeMaxes, "generation biome maximums");
+        if (target.getData() != data || target.getDimension() != dimension) {
+            throw new IllegalArgumentException("Generation target, data, and dimension must describe one runtime.");
+        }
+    }
+
+    GenerationRuntime withComplex(
+            int nextCacheId,
+            IrisComplex nextComplex,
+            UpperDimensionContext nextUpperContext,
+            DimensionStackContext nextDimensionStackContext,
+            BiomeMaxes nextBiomeMaxes
+    ) {
+        return new GenerationRuntime(
+                nextCacheId,
+                target,
+                data,
+                dimension,
+                kernelVersion,
+                runtimeKernel,
+                seedManager,
+                transitionPlan,
+                nextComplex,
+                nextUpperContext,
+                nextDimensionStackContext,
+                mode,
+                mantle,
+                mantleStorageDirectory,
+                hash32,
+                nextBiomeMaxes);
+    }
+
+    record BiomeMaxes(double objectDensity, double layerDensity, double decoratorDensity) {
+    }
+}

core/src/main/java/art/arcane/iris/engine/GenerationRuntimeScopeState.java

@@ -0,0 +1,55 @@
+/*
+ * Iris is a World Generator for Minecraft Bukkit Servers
+ * Copyright (c) 2022 Arcane Arts (Volmit Software)
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program.  If not, see <https://www.gnu.org/licenses/>.
+ */
+
+package art.arcane.iris.engine;
+
+import art.arcane.iris.engine.IrisEngine.GenerationRuntimeBinding;
+import art.arcane.iris.engine.IrisEngine.GenerationRuntimeScope;
+
+final class GenerationRuntimeScopeState {
+    private final ThreadLocal<GenerationRuntimeBinding> current = new ThreadLocal<>();
+
+    GenerationRuntimeBinding current() {
+        return current.get();
+    }
+
+    GenerationRuntimeScope open(GenerationRuntimeBinding binding) {
+        Thread owner = Thread.currentThread();
+        GenerationRuntimeBinding previous = current.get();
+        current.set(binding);
+        return new GenerationRuntimeScope(this, owner, previous, binding);
+    }
+
+    void close(
+            Thread owner,
+            GenerationRuntimeBinding previous,
+            GenerationRuntimeBinding installed
+    ) {
+        if (Thread.currentThread() != owner) {
+            throw new IllegalStateException("Iris generation runtime scope closed from a different thread.");
+        }
+        if (current.get() != installed) {
+            throw new IllegalStateException("Iris generation runtime scopes must close in LIFO order.");
+        }
+        if (previous == null) {
+            current.remove();
+            return;
+        }
+        current.set(previous);
+    }
+}